RNA–Protein interactions for RNA: ENST00000449476.6

CTC1-202, Transcript of CST telomere replication complex component 1, humanhuman

TSL 2

Gene CTC1, Length 4,797 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1-202ENST00000449476 GOLGA6L22H0YM25 854 aa13.45□□□□□ -0.26
CTC1-202ENST00000449476 MS4A1P11836 297 aa13.44□□□□□ -0.26
CTC1-202ENST00000449476 HNRNPMP52272 730 aaKnown RBP eCLIP13.44□□□□□ -0.26
CTC1-202ENST00000449476 RCAN3Q9UKA8 241 aa13.44□□□□□ -0.26
CTC1-202ENST00000449476 SAFB2Q14151 953 aaKnown RBP eCLIP13.44□□□□□ -0.26
CTC1-202ENST00000449476 CCDC18Q5T9S5 1454 aa13.44□□□□□ -0.26
CTC1-202ENST00000449476 SRPK2P78362 688 aaKnown RBP13.43□□□□□ -0.26
CTC1-202ENST00000449476 TSHZ2Q9NRE2 1034 aa13.43□□□□□ -0.26
CTC1-202ENST00000449476 IGF1RP08069 1367 aa13.41□□□□□ -0.26
CTC1-202ENST00000449476 PNNQ9H307 717 aaKnown RBP13.41□□□□□ -0.26
CTC1-202ENST00000449476 FANCD2Q9BXW9 1451 aa13.41□□□□□ -0.26
CTC1-202ENST00000449476 JPH4Q96JJ6 628 aa13.41□□□□□ -0.26
CTC1-202ENST00000449476 CHMP4BQ9H444 224 aaKnown RBP13.4□□□□□ -0.26
CTC1-202ENST00000449476 TRIM44Q96DX7 344 aaPredicted RBP13.4□□□□□ -0.26
CTC1-202ENST00000449476 CASC1Q6TDU7 716 aa13.39□□□□□ -0.27
CTC1-202ENST00000449476 NCLP19338 710 aaKnown RBP13.39□□□□□ -0.27
CTC1-202ENST00000449476 RSPH4AQ5TD94 716 aa13.39□□□□□ -0.27
CTC1-202ENST00000449476 NLRP13Q86W25 1043 aa13.38□□□□□ -0.27
CTC1-202ENST00000449476 STK26Q9P289 416 aa13.37□□□□□ -0.27
CTC1-202ENST00000449476 MLECQ14165 292 aa13.37□□□□□ -0.27
CTC1-202ENST00000449476 A0A0G2JS52 829 aa13.37□□□□□ -0.27
CTC1-202ENST00000449476 KIF3BO15066 747 aa13.37□□□□□ -0.27
CTC1-202ENST00000449476 ST20-MTHFSA0A0A6YYL1 179 aa13.36□□□□□ -0.27
CTC1-202ENST00000449476 GLIPR1L2Q4G1C9 344 aa13.35□□□□□ -0.27
CTC1-202ENST00000449476 PRKRIP1Q9H875 184 aaPredicted RBP13.35□□□□□ -0.27
CTC1-202ENST00000449476 U2AF1L5P0DN76 240 aaPredicted RBP13.34□□□□□ -0.27
CTC1-202ENST00000449476 U2AF1Q01081 240 aaKnown RBP eCLIP13.34□□□□□ -0.271e-10■■■■□ 19.8
CTC1-202ENST00000449476 FGD5Q6ZNL6 1462 aa13.34□□□□□ -0.27
CTC1-202ENST00000449476 LMOD2Q6P5Q4 547 aa13.34□□□□□ -0.27
CTC1-202ENST00000449476 KIF21BO75037 1637 aa13.34□□□□□ -0.27
CTC1-202ENST00000449476 TCERG1O14776 1098 aaKnown RBP13.33□□□□□ -0.27
CTC1-202ENST00000449476 SOX12O15370 315 aa13.33□□□□□ -0.28
CTC1-202ENST00000449476 SPAG9O60271 1321 aaKnown RBP13.32□□□□□ -0.28
CTC1-202ENST00000449476 HSP90AB1P08238 724 aaKnown RBP13.32□□□□□ -0.28
CTC1-202ENST00000449476 PDE3BQ13370 1112 aa13.32□□□□□ -0.28
CTC1-202ENST00000449476 HDGFP51858 240 aaKnown RBP13.31□□□□□ -0.28
CTC1-202ENST00000449476 HDGFL2Q7Z4V5 671 aaPredicted RBP13.31□□□□□ -0.28
CTC1-202ENST00000449476 GOLGA2Q08379 1002 aa13.31□□□□□ -0.28
CTC1-202ENST00000449476 PHLDB1Q86UU1 1377 aa13.3□□□□□ -0.28
CTC1-202ENST00000449476 DEKP35659 375 aaKnown RBP13.29□□□□□ -0.28
CTC1-202ENST00000449476 RTN4Q9NQC3 1192 aaKnown RBP13.29□□□□□ -0.28
CTC1-202ENST00000449476 EIF3AQ14152 1382 aaKnown RBP13.29□□□□□ -0.28
CTC1-202ENST00000449476 KIF15Q9NS87 1388 aa13.29□□□□□ -0.28
CTC1-202ENST00000449476 RAD54L2Q9Y4B4 1467 aa13.29□□□□□ -0.28
CTC1-202ENST00000449476 HAP1P54257 671 aaPredicted RBP13.29□□□□□ -0.28
CTC1-202ENST00000449476 MYBBP1AQ9BQG0 1328 aaKnown RBP13.28□□□□□ -0.28
CTC1-202ENST00000449476 IPO8O15397 1037 aaKnown RBP13.28□□□□□ -0.28
CTC1-202ENST00000449476 FGD6Q6ZV73 1430 aa13.28□□□□□ -0.28
CTC1-202ENST00000449476 HSCBQ8IWL3 235 aa13.28□□□□□ -0.28
CTC1-202ENST00000449476 CCDC144AA2RUR9 1427 aa13.28□□□□□ -0.28
CTC1-202ENST00000449476 TPRNQ4KMQ1 711 aa13.27□□□□□ -0.28
CTC1-202ENST00000449476 GAPVD1Q14C86 1478 aa13.27□□□□□ -0.28
CTC1-202ENST00000449476 CCDC146Q8IYE0 955 aa13.27□□□□□ -0.29
CTC1-202ENST00000449476 USP47Q96K76 1375 aa13.27□□□□□ -0.29
CTC1-202ENST00000449476 PANK3Q9H999 370 aa13.27□□□□□ -0.29
CTC1-202ENST00000449476 NCAPD3P42695 1498 aa13.26□□□□□ -0.29
CTC1-202ENST00000449476 PTMAP06454 111 aaKnown RBP13.26□□□□□ -0.29
CTC1-202ENST00000449476 RWDD1Q9H446 243 aaPredicted RBP13.26□□□□□ -0.29
CTC1-202ENST00000449476 LRRC9Q6ZRR7 1453 aa13.26□□□□□ -0.29
CTC1-202ENST00000449476 OS9Q13438 667 aaPredicted RBP13.25□□□□□ -0.29
CTC1-202ENST00000449476 SPRYD3Q8NCJ5 442 aa13.25□□□□□ -0.29
CTC1-202ENST00000449476 ZBED9Q6R2W3 1325 aa13.25□□□□□ -0.29
CTC1-202ENST00000449476 MYOM3Q5VTT5 1437 aa13.25□□□□□ -0.29
CTC1-202ENST00000449476 ITPRIPQ8IWB1 547 aa13.23□□□□□ -0.29
CTC1-202ENST00000449476 PTPRGP23470 1445 aa13.23□□□□□ -0.29
CTC1-202ENST00000449476 ZNF644Q9H582 1327 aaPredicted RBP13.23□□□□□ -0.29
CTC1-202ENST00000449476 ARAP1Q96P48 1450 aa13.23□□□□□ -0.29
CTC1-202ENST00000449476 UACAQ9BZF9 1416 aa13.23□□□□□ -0.29
CTC1-202ENST00000449476 IPO9Q96P70 1041 aaKnown RBP13.23□□□□□ -0.29
CTC1-202ENST00000449476 WASHC2CQ9Y4E1 1318 aa13.23□□□□□ -0.29
CTC1-202ENST00000449476 NUTM2DQ5VT03 806 aaPredicted RBP13.23□□□□□ -0.29
CTC1-202ENST00000449476 RTF1Q92541 710 aaKnown RBP13.23□□□□□ -0.29
CTC1-202ENST00000449476 CLUAP1Q96AJ1 413 aa13.23□□□□□ -0.29
CTC1-202ENST00000449476 TRAK1Q9UPV9 953 aa13.23□□□□□ -0.29
CTC1-202ENST00000449476 CALD1Q05682 793 aaKnown RBP13.22□□□□□ -0.29
CTC1-202ENST00000449476 TERF2IPQ9NYB0 399 aa13.22□□□□□ -0.29
CTC1-202ENST00000449476 SYNJ1O43426 1573 aa13.21□□□□□ -0.29
CTC1-202ENST00000449476 CENPJQ9HC77 1338 aaPredicted RBP13.21□□□□□ -0.3
CTC1-202ENST00000449476 APBB1O00213 710 aa13.21□□□□□ -0.3
CTC1-202ENST00000449476 SMC4Q9NTJ3 1288 aa13.21□□□□□ -0.3
CTC1-202ENST00000449476 KCNJ4P48050 445 aa13.2□□□□□ -0.3
CTC1-202ENST00000449476 PMFBP1Q8TBY8 1022 aa13.2□□□□□ -0.3
CTC1-202ENST00000449476 SLKQ9H2G2 1235 aaPredicted RBP13.2□□□□□ -0.3
CTC1-202ENST00000449476 ZRSR1Q15695 479 aaKnown RBP13.19□□□□□ -0.3
CTC1-202ENST00000449476 ERICH3Q5RHP9 1530 aa13.19□□□□□ -0.3
CTC1-202ENST00000449476 CASKIN1Q8WXD9 1431 aa13.18□□□□□ -0.3
CTC1-202ENST00000449476 DNTTIP2Q5QJE6 756 aaKnown RBP13.18□□□□□ -0.3
CTC1-202ENST00000449476 RRBP1Q9P2E9 1410 aaKnown RBP13.18□□□□□ -0.3
CTC1-202ENST00000449476 PLIN1O60240 522 aa13.18□□□□□ -0.3
CTC1-202ENST00000449476 CFAP44Q96MT7 982 aa13.18□□□□□ -0.3
CTC1-202ENST00000449476 CCDC7Q96M83 1385 aa13.18□□□□□ -0.3
CTC1-202ENST00000449476 KIF7Q2M1P5 1343 aa13.18□□□□□ -0.3
CTC1-202ENST00000449476 CUX1P39880 1505 aa13.17□□□□□ -0.3
CTC1-202ENST00000449476 FGD1P98174 961 aa13.17□□□□□ -0.3
CTC1-202ENST00000449476 PLCB2Q00722 1185 aa13.17□□□□□ -0.3
CTC1-202ENST00000449476 EXOC6Q8TAG9 804 aa13.17□□□□□ -0.3
CTC1-202ENST00000449476 RRP1P56182 461 aaKnown RBP13.17□□□□□ -0.3
CTC1-202ENST00000449476 RRP7AQ9Y3A4 280 aaKnown RBP13.17□□□□□ -0.3
CTC1-202ENST00000449476 NAP1L5Q96NT1 182 aaPredicted RBP13.16□□□□□ -0.3
CTC1-202ENST00000449476 NCOA2Q15596 1464 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms