RNA–Protein interactions for RNA: ENST00000443503.6

CTDSPL-206, Transcript of CTD small phosphatase like, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CTDSPL, Length 4,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL-206ENST00000443503 ANP32EQ9BTT0 268 aa29.17■■■□□ 2.26
CTDSPL-206ENST00000443503 RAD54L2Q9Y4B4 1467 aa29.17■■■□□ 2.26
CTDSPL-206ENST00000443503 NCAPD3P42695 1498 aa29.15■■■□□ 2.26
CTDSPL-206ENST00000443503 SRPK2P78362 688 aaKnown RBP29.15■■■□□ 2.26
CTDSPL-206ENST00000443503 BECN1Q14457 450 aa29.15■■■□□ 2.26
CTDSPL-206ENST00000443503 MORC1Q86VD1 984 aa29.14■■■□□ 2.25
CTDSPL-206ENST00000443503 KIF3BO15066 747 aa29.13■■■□□ 2.25
CTDSPL-206ENST00000443503 EIF5BO60841 1220 aaKnown RBP29.09■■■□□ 2.25
CTDSPL-206ENST00000443503 STK26Q9P289 416 aa29.09■■■□□ 2.25
CTDSPL-206ENST00000443503 KIF21BO75037 1637 aa29.09■■■□□ 2.25
CTDSPL-206ENST00000443503 RSPH4AQ5TD94 716 aa29.09■■■□□ 2.25
CTDSPL-206ENST00000443503 RALBP1Q15311 655 aa29.07■■■□□ 2.24
CTDSPL-206ENST00000443503 GAPVD1Q14C86 1478 aa29.06■■■□□ 2.24
CTDSPL-206ENST00000443503 SPAG9O60271 1321 aaKnown RBP29.04■■■□□ 2.24
CTDSPL-206ENST00000443503 RBM19Q9Y4C8 960 aaKnown RBP29.03■■■□□ 2.24
CTDSPL-206ENST00000443503 PHLDB1Q86UU1 1377 aa29.01■■■□□ 2.24
CTDSPL-206ENST00000443503 A0A0G2JS52 829 aa29■■■□□ 2.23
CTDSPL-206ENST00000443503 ST20-MTHFSA0A0A6YYL1 179 aa29■■■□□ 2.23
CTDSPL-206ENST00000443503 RCAN3Q9UKA8 241 aa28.98■■■□□ 2.23
CTDSPL-206ENST00000443503 LMOD2Q6P5Q4 547 aa28.98■■■□□ 2.23
CTDSPL-206ENST00000443503 SOX12O15370 315 aa28.97■■■□□ 2.23
CTDSPL-206ENST00000443503 NOP58Q9Y2X3 529 aaKnown RBP28.96■■■□□ 2.23
CTDSPL-206ENST00000443503 SYNJ1O43426 1573 aa28.95■■■□□ 2.23
CTDSPL-206ENST00000443503 NLRP13Q86W25 1043 aa28.94■■■□□ 2.22
CTDSPL-206ENST00000443503 PTPRGP23470 1445 aa28.94■■■□□ 2.22
CTDSPL-206ENST00000443503 ERICH6BQ5W0A0 696 aa28.93■■■□□ 2.22
CTDSPL-206ENST00000443503 FGD6Q6ZV73 1430 aa28.93■■■□□ 2.22
CTDSPL-206ENST00000443503 ZNF644Q9H582 1327 aaPredicted RBP28.92■■■□□ 2.22
CTDSPL-206ENST00000443503 ARAP1Q96P48 1450 aa28.92■■■□□ 2.22
CTDSPL-206ENST00000443503 MS4A1P11836 297 aa28.92■■■□□ 2.22
CTDSPL-206ENST00000443503 PNNQ9H307 717 aaKnown RBP28.91■■■□□ 2.22
CTDSPL-206ENST00000443503 U2AF1L5P0DN76 240 aaPredicted RBP28.89■■■□□ 2.22
CTDSPL-206ENST00000443503 U2AF1Q01081 240 aaKnown RBP eCLIP28.89■■■□□ 2.22
CTDSPL-206ENST00000443503 PRKRIP1Q9H875 184 aaPredicted RBP28.89■■■□□ 2.22
CTDSPL-206ENST00000443503 LRRC9Q6ZRR7 1453 aa28.88■■■□□ 2.21
CTDSPL-206ENST00000443503 HDGFP51858 240 aaKnown RBP28.87■■■□□ 2.21
CTDSPL-206ENST00000443503 CFTRP13569 1480 aa28.86■■■□□ 2.21
CTDSPL-206ENST00000443503 CCDC144AA2RUR9 1427 aa28.85■■■□□ 2.21
CTDSPL-206ENST00000443503 MYOM3Q5VTT5 1437 aa28.85■■■□□ 2.21
CTDSPL-206ENST00000443503 AQRO60306 1485 aaKnown RBP eCLIP28.84■■■□□ 2.212e-9■■■■■ 31.6
CTDSPL-206ENST00000443503 NUTM2DQ5VT03 806 aaPredicted RBP28.84■■■□□ 2.21
CTDSPL-206ENST00000443503 HDGFL2Q7Z4V5 671 aaPredicted RBP28.83■■■□□ 2.21
CTDSPL-206ENST00000443503 TSHZ2Q9NRE2 1034 aa28.83■■■□□ 2.21
CTDSPL-206ENST00000443503 HAP1P54257 671 aaPredicted RBP28.82■■■□□ 2.2
CTDSPL-206ENST00000443503 WASHC2CQ9Y4E1 1318 aa28.82■■■□□ 2.2
CTDSPL-206ENST00000443503 CHMP4BQ9H444 224 aaKnown RBP28.81■■■□□ 2.2
CTDSPL-206ENST00000443503 EIF3AQ14152 1382 aaKnown RBP28.79■■■□□ 2.2
CTDSPL-206ENST00000443503 USP47Q96K76 1375 aa28.79■■■□□ 2.2
CTDSPL-206ENST00000443503 GOLGA6L22H0YM25 854 aa28.78■■■□□ 2.2
CTDSPL-206ENST00000443503 ERICH3Q5RHP9 1530 aa28.77■■■□□ 2.2
CTDSPL-206ENST00000443503 PANK3Q9H999 370 aa28.77■■■□□ 2.2
CTDSPL-206ENST00000443503 TRAK1Q9UPV9 953 aa28.76■■■□□ 2.19
CTDSPL-206ENST00000443503 PRXQ9BXM0 1461 aa28.76■■■□□ 2.19
CTDSPL-206ENST00000443503 CASC1Q6TDU7 716 aa28.76■■■□□ 2.19
CTDSPL-206ENST00000443503 TRHP20396 242 aaPredicted RBP28.76■■■□□ 2.19
CTDSPL-206ENST00000443503 CASKIN1Q8WXD9 1431 aa28.75■■■□□ 2.19
CTDSPL-206ENST00000443503 CCDC146Q8IYE0 955 aa28.75■■■□□ 2.19
CTDSPL-206ENST00000443503 KIF15Q9NS87 1388 aa28.75■■■□□ 2.19
CTDSPL-206ENST00000443503 UACAQ9BZF9 1416 aa28.74■■■□□ 2.19
CTDSPL-206ENST00000443503 GOLGA2Q08379 1002 aa28.74■■■□□ 2.19
CTDSPL-206ENST00000443503 MYBBP1AQ9BQG0 1328 aaKnown RBP28.72■■■□□ 2.19
CTDSPL-206ENST00000443503 NCLP19338 710 aaKnown RBP28.71■■■□□ 2.19
CTDSPL-206ENST00000443503 NCOA2Q15596 1464 aa28.7■■■□□ 2.18
CTDSPL-206ENST00000443503 PDE3BQ13370 1112 aa28.69■■■□□ 2.18
CTDSPL-206ENST00000443503 NESP48681 1621 aa28.68■■■□□ 2.18
CTDSPL-206ENST00000443503 RRBP1Q9P2E9 1410 aaKnown RBP28.67■■■□□ 2.18
CTDSPL-206ENST00000443503 CUX1P39880 1505 aa28.65■■■□□ 2.18
CTDSPL-206ENST00000443503 TCERG1O14776 1098 aaKnown RBP28.64■■■□□ 2.18
CTDSPL-206ENST00000443503 TERF2IPQ9NYB0 399 aa28.64■■■□□ 2.18
CTDSPL-206ENST00000443503 IPO8O15397 1037 aaKnown RBP28.63■■■□□ 2.17
CTDSPL-206ENST00000443503 TOP2BQ02880 1626 aa28.61■■■□□ 2.17
CTDSPL-206ENST00000443503 TRIM44Q96DX7 344 aaPredicted RBP28.61■■■□□ 2.17
CTDSPL-206ENST00000443503 CLUAP1Q96AJ1 413 aa28.61■■■□□ 2.17
CTDSPL-206ENST00000443503 ZBED9Q6R2W3 1325 aa28.6■■■□□ 2.17
CTDSPL-206ENST00000443503 RTF1Q92541 710 aaKnown RBP28.6■■■□□ 2.17
CTDSPL-206ENST00000443503 OS9Q13438 667 aaPredicted RBP28.59■■■□□ 2.17
CTDSPL-206ENST00000443503 HSP90AB1P08238 724 aaKnown RBP28.59■■■□□ 2.17
CTDSPL-206ENST00000443503 FYCO1Q9BQS8 1478 aa28.58■■■□□ 2.17
CTDSPL-206ENST00000443503 KIF7Q2M1P5 1343 aa28.58■■■□□ 2.17
CTDSPL-206ENST00000443503 ITPRIPQ8IWB1 547 aa28.57■■■□□ 2.16
CTDSPL-206ENST00000443503 TPRNQ4KMQ1 711 aa28.57■■■□□ 2.16
CTDSPL-206ENST00000443503 CCDC7Q96M83 1385 aa28.56■■■□□ 2.16
CTDSPL-206ENST00000443503 ANKRD50Q9ULJ7 1429 aa28.56■■■□□ 2.16
CTDSPL-206ENST00000443503 APBB1O00213 710 aa28.54■■■□□ 2.16
CTDSPL-206ENST00000443503 RRP7AQ9Y3A4 280 aaKnown RBP28.54■■■□□ 2.16
CTDSPL-206ENST00000443503 GRIN2BQ13224 1484 aa28.54■■■□□ 2.16
CTDSPL-206ENST00000443503 RWDD1Q9H446 243 aaPredicted RBP28.54■■■□□ 2.16
CTDSPL-206ENST00000443503 SMC4Q9NTJ3 1288 aa28.54■■■□□ 2.16
CTDSPL-206ENST00000443503 PAK3O75914 559 aaPredicted RBP28.53■■■□□ 2.16
CTDSPL-206ENST00000443503 SPRYD3Q8NCJ5 442 aa28.52■■■□□ 2.16
CTDSPL-206ENST00000443503 CENPJQ9HC77 1338 aaPredicted RBP28.52■■■□□ 2.16
CTDSPL-206ENST00000443503 CALD1Q05682 793 aaKnown RBP28.51■■■□□ 2.16
CTDSPL-206ENST00000443503 POLA1P09884 1462 aaPredicted RBP28.51■■■□□ 2.15
CTDSPL-206ENST00000443503 HMGXB3Q12766 1538 aa28.51■■■□□ 2.15
CTDSPL-206ENST00000443503 HSCBQ8IWL3 235 aa28.5■■■□□ 2.15
CTDSPL-206ENST00000443503 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.5■■■□□ 2.152e-6■■□□□ 12.3
CTDSPL-206ENST00000443503 WASHC2AQ641Q2 1341 aa28.5■■■□□ 2.15
CTDSPL-206ENST00000443503 TOPBP1Q92547 1522 aa28.5■■■□□ 2.15
CTDSPL-206ENST00000443503 PLIN1O60240 522 aa28.5■■■□□ 2.15
CTDSPL-206ENST00000443503 NUTM2FA1L443 756 aa28.49■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms