RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 ABCC10Q5T3U5 1492 aa10.77□□□□□ -0.69
CDC42BPA-208ENST00000442054 PELP1Q8IZL8 1130 aaKnown RBP10.76□□□□□ -0.69
CDC42BPA-208ENST00000442054 POGZQ7Z3K3 1410 aa10.76□□□□□ -0.69
CDC42BPA-208ENST00000442054 KIAA0556O60303 1618 aa10.76□□□□□ -0.69
CDC42BPA-208ENST00000442054 EFCAB5A4FU69 1503 aa10.75□□□□□ -0.69
CDC42BPA-208ENST00000442054 WASHC2CQ9Y4E1 1318 aa10.75□□□□□ -0.69
CDC42BPA-208ENST00000442054 RSPH4AQ5TD94 716 aa10.75□□□□□ -0.69
CDC42BPA-208ENST00000442054 ARHGAP5Q13017 1502 aa10.74□□□□□ -0.69
CDC42BPA-208ENST00000442054 PPP1R15AO75807 674 aaPredicted RBP10.74□□□□□ -0.69
CDC42BPA-208ENST00000442054 CTTNBP2Q8WZ74 1663 aa10.74□□□□□ -0.69
CDC42BPA-208ENST00000442054 TROQ12816 1431 aaPredicted RBP10.73□□□□□ -0.69
CDC42BPA-208ENST00000442054 DENND4BO75064 1496 aaPredicted RBP10.73□□□□□ -0.69
CDC42BPA-208ENST00000442054 CDK13Q14004 1512 aaKnown RBP10.72□□□□□ -0.69
CDC42BPA-208ENST00000442054 PCF11O94913 1555 aaKnown RBP10.72□□□□□ -0.69
CDC42BPA-208ENST00000442054 ZNF644Q9H582 1327 aaPredicted RBP10.71□□□□□ -0.7
CDC42BPA-208ENST00000442054 PHLDB1Q86UU1 1377 aa10.7□□□□□ -0.7
CDC42BPA-208ENST00000442054 FANCAO15360 1455 aa10.7□□□□□ -0.7
CDC42BPA-208ENST00000442054 TSPOAP1O95153 1857 aa10.7□□□□□ -0.7
CDC42BPA-208ENST00000442054 CASKIN1Q8WXD9 1431 aa10.7□□□□□ -0.7
CDC42BPA-208ENST00000442054 C14orf37Q86TY3 774 aa10.7□□□□□ -0.7
CDC42BPA-208ENST00000442054 AKNAQ7Z591 1439 aa10.7□□□□□ -0.7
CDC42BPA-208ENST00000442054 LRRC9Q6ZRR7 1453 aa10.69□□□□□ -0.7
CDC42BPA-208ENST00000442054 EPRSP07814 1512 aaKnown RBP10.69□□□□□ -0.7
CDC42BPA-208ENST00000442054 CEBPAP49715 358 aaPredicted RBP10.69□□□□□ -0.7
CDC42BPA-208ENST00000442054 UHRF1BP1LA0JNW5 1464 aa10.69□□□□□ -0.7
CDC42BPA-208ENST00000442054 ADGRL1O94910 1474 aa10.69□□□□□ -0.7
CDC42BPA-208ENST00000442054 SAMD9Q5K651 1589 aa10.69□□□□□ -0.7
CDC42BPA-208ENST00000442054 KDM5BQ9UGL1 1544 aa10.68□□□□□ -0.7
CDC42BPA-208ENST00000442054 ZNF326Q5BKZ1 582 aaKnown RBP10.68□□□□□ -0.7
CDC42BPA-208ENST00000442054 KANK1Q14678 1352 aa10.67□□□□□ -0.7
CDC42BPA-208ENST00000442054 MIER1Q8N108 512 aa10.67□□□□□ -0.7
CDC42BPA-208ENST00000442054 NUP153P49790 1475 aaKnown RBP10.67□□□□□ -0.7
CDC42BPA-208ENST00000442054 KDM6BO15054 1643 aa10.66□□□□□ -0.7
CDC42BPA-208ENST00000442054 HECW1Q76N89 1606 aa10.65□□□□□ -0.7
CDC42BPA-208ENST00000442054 RAPGEF6Q8TEU7 1601 aa10.65□□□□□ -0.7
CDC42BPA-208ENST00000442054 HSPA2P54652 639 aa10.65□□□□□ -0.71
CDC42BPA-208ENST00000442054 GTF3C3Q9Y5Q9 886 aa10.65□□□□□ -0.71
CDC42BPA-208ENST00000442054 FYCO1Q9BQS8 1478 aa10.62□□□□□ -0.71
CDC42BPA-208ENST00000442054 ADCY10Q96PN6 1610 aa10.62□□□□□ -0.71
CDC42BPA-208ENST00000442054 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.62□□□□□ -0.71
CDC42BPA-208ENST00000442054 EID1Q9Y6B2 187 aa10.62□□□□□ -0.71
CDC42BPA-208ENST00000442054 PLCH2O75038 1416 aa10.62□□□□□ -0.71
CDC42BPA-208ENST00000442054 HDGFP51858 240 aaKnown RBP10.61□□□□□ -0.71
CDC42BPA-208ENST00000442054 SHROOM2Q13796 1616 aa10.61□□□□□ -0.71
CDC42BPA-208ENST00000442054 ANKRD30AQ9BXX3 1397 aa10.6□□□□□ -0.71
CDC42BPA-208ENST00000442054 SLC4A1APQ9BWU0 796 aaKnown RBP10.59□□□□□ -0.71
CDC42BPA-208ENST00000442054 DMRT2Q9Y5R5 561 aa10.59□□□□□ -0.71
CDC42BPA-208ENST00000442054 RAB3GAP2Q9H2M9 1393 aa10.58□□□□□ -0.72
CDC42BPA-208ENST00000442054 PLEKHH2Q8IVE3 1493 aa10.58□□□□□ -0.72
CDC42BPA-208ENST00000442054 ABCA8O94911 1581 aa10.57□□□□□ -0.72
CDC42BPA-208ENST00000442054 KIF14Q15058 1648 aa10.57□□□□□ -0.72
CDC42BPA-208ENST00000442054 ZCCHC11Q5TAX3 1644 aaKnown RBP10.56□□□□□ -0.72
CDC42BPA-208ENST00000442054 NEO1Q92859 1461 aa10.56□□□□□ -0.72
CDC42BPA-208ENST00000442054 CENPBP07199 599 aaPredicted RBP10.56□□□□□ -0.72
CDC42BPA-208ENST00000442054 NCOA2Q15596 1464 aa10.55□□□□□ -0.72
CDC42BPA-208ENST00000442054 THEMISQ8N1K5 641 aaPredicted RBP10.54□□□□□ -0.72
CDC42BPA-208ENST00000442054 RGL3Q3MIN7 710 aa10.54□□□□□ -0.72
CDC42BPA-208ENST00000442054 SETD5Q9C0A6 1442 aa10.54□□□□□ -0.72
CDC42BPA-208ENST00000442054 MYT1Q01538 1121 aa10.53□□□□□ -0.72
CDC42BPA-208ENST00000442054 MAGI3Q5TCQ9 1506 aa10.53□□□□□ -0.72
CDC42BPA-208ENST00000442054 MYOM3Q5VTT5 1437 aa10.53□□□□□ -0.72
CDC42BPA-208ENST00000442054 KDM4FA0A1W2PPD8 638 aa10.53□□□□□ -0.72
CDC42BPA-208ENST00000442054 ZNF518AQ6AHZ1 1483 aa10.53□□□□□ -0.72
CDC42BPA-208ENST00000442054 DIP2BQ9P265 1576 aa10.53□□□□□ -0.72
CDC42BPA-208ENST00000442054 PTPRKQ15262 1439 aa10.52□□□□□ -0.72
CDC42BPA-208ENST00000442054 ANKLE2Q86XL3 938 aa10.52□□□□□ -0.73
CDC42BPA-208ENST00000442054 PTPN23Q9H3S7 1636 aa10.52□□□□□ -0.73
CDC42BPA-208ENST00000442054 KIF15Q9NS87 1388 aa10.51□□□□□ -0.73
CDC42BPA-208ENST00000442054 GCC2Q8IWJ2 1684 aa10.51□□□□□ -0.73
CDC42BPA-208ENST00000442054 NUTM2DQ5VT03 806 aaPredicted RBP10.51□□□□□ -0.73
CDC42BPA-208ENST00000442054 NUP155O75694 1391 aa10.51□□□□□ -0.73
CDC42BPA-208ENST00000442054 TRAPPC8Q9Y2L5 1435 aa10.5□□□□□ -0.73
CDC42BPA-208ENST00000442054 TXNDC2Q86VQ3 553 aa10.5□□□□□ -0.73
CDC42BPA-208ENST00000442054 FBXO31Q5XUX0 539 aaPredicted RBP10.49□□□□□ -0.73
CDC42BPA-208ENST00000442054 YEATS2Q9ULM3 1422 aa10.49□□□□□ -0.73
CDC42BPA-208ENST00000442054 PLEKHG5O94827 1062 aa10.49□□□□□ -0.73
CDC42BPA-208ENST00000442054 ATP10AO60312 1499 aa10.49□□□□□ -0.73
CDC42BPA-208ENST00000442054 EHBP1L1Q8N3D4 1523 aa10.48□□□□□ -0.73
CDC42BPA-208ENST00000442054 PIP4K2BP78356 416 aa10.48□□□□□ -0.73
CDC42BPA-208ENST00000442054 KDM2AQ9Y2K7 1162 aa10.48□□□□□ -0.73
CDC42BPA-208ENST00000442054 GPATCH8Q9UKJ3 1502 aaKnown RBP10.48□□□□□ -0.73
CDC42BPA-208ENST00000442054 TCOF1Q13428 1488 aaKnown RBP10.48□□□□□ -0.73
CDC42BPA-208ENST00000442054 FGD6Q6ZV73 1430 aa10.47□□□□□ -0.73
CDC42BPA-208ENST00000442054 PPP6R1Q9UPN7 881 aa10.47□□□□□ -0.73
CDC42BPA-208ENST00000442054 HFM1A2PYH4 1435 aa10.46□□□□□ -0.73
CDC42BPA-208ENST00000442054 COL17A1Q9UMD9 1497 aaPredicted RBP10.46□□□□□ -0.73
CDC42BPA-208ENST00000442054 SUPT6HQ7KZ85 1726 aaKnown RBP10.46□□□□□ -0.73
CDC42BPA-208ENST00000442054 C9orf84Q5VXU9 1444 aa10.46□□□□□ -0.74
CDC42BPA-208ENST00000442054 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.45□□□□□ -0.74
CDC42BPA-208ENST00000442054 PKD2Q13563 968 aa10.45□□□□□ -0.74
CDC42BPA-208ENST00000442054 CCDC141Q6ZP82 1450 aa10.45□□□□□ -0.74
CDC42BPA-208ENST00000442054 ZFYVE16Q7Z3T8 1539 aa10.45□□□□□ -0.74
CDC42BPA-208ENST00000442054 UHRF1BP1Q6BDS2 1440 aa10.44□□□□□ -0.74
CDC42BPA-208ENST00000442054 DHX29Q7Z478 1369 aaKnown RBP10.44□□□□□ -0.74
CDC42BPA-208ENST00000442054 UBAP1LF5GYI3 381 aa10.43□□□□□ -0.74
CDC42BPA-208ENST00000442054 ZMYM3Q14202 1370 aa10.43□□□□□ -0.74
CDC42BPA-208ENST00000442054 HAP1P54257 671 aaPredicted RBP10.43□□□□□ -0.74
CDC42BPA-208ENST00000442054 POLR3GLQ9BT43 218 aa10.43□□□□□ -0.74
CDC42BPA-208ENST00000442054 A2MP01023 1474 aa10.43□□□□□ -0.74
CDC42BPA-208ENST00000442054 NAIPQ13075 1403 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms