RNA–Protein interactions for RNA: ENST00000442054.5

CDC42BPA-208, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-208ENST00000442054 NISCHQ9Y2I1 1504 aa15.78■□□□□ 0.12
CDC42BPA-208ENST00000442054 DCAF8L2P0C7V8 631 aa14.61□□□□□ -0.07
CDC42BPA-208ENST00000442054 ABCC9O60706 1549 aa14.18□□□□□ -0.14
CDC42BPA-208ENST00000442054 CCDC180Q9P1Z9 1646 aa13.64□□□□□ -0.23
CDC42BPA-208ENST00000442054 PABPN1Q86U42 306 aaKnown RBP eCLIP13.56□□□□□ -0.24
CDC42BPA-208ENST00000442054 SHROOM4Q9ULL8 1493 aa13.37□□□□□ -0.27
CDC42BPA-208ENST00000442054 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.28
CDC42BPA-208ENST00000442054 NACADO15069 1562 aa13.15□□□□□ -0.31
CDC42BPA-208ENST00000442054 ZCCHC6Q5VYS8 1495 aaKnown RBP13.02□□□□□ -0.33
CDC42BPA-208ENST00000442054 SCRIBQ14160 1630 aa12.97□□□□□ -0.33
CDC42BPA-208ENST00000442054 SUPT5HO00267 1087 aaKnown RBP12.86□□□□□ -0.35
CDC42BPA-208ENST00000442054 DNAJC5BQ9UF47 199 aa12.84□□□□□ -0.35
CDC42BPA-208ENST00000442054 MYO15BQ96JP2 1530 aa12.76□□□□□ -0.37
CDC42BPA-208ENST00000442054 DCAF1Q9Y4B6 1507 aa12.75□□□□□ -0.37
CDC42BPA-208ENST00000442054 CHIC1Q5VXU3 224 aa12.65□□□□□ -0.39
CDC42BPA-208ENST00000442054 CECR2Q9BXF3 1484 aa12.64□□□□□ -0.39
CDC42BPA-208ENST00000442054 AEBP2Q6ZN18 517 aaPredicted RBP12.48□□□□□ -0.41
CDC42BPA-208ENST00000442054 ERCC6Q03468 1493 aa12.45□□□□□ -0.42
CDC42BPA-208ENST00000442054 BICRAQ9NZM4 1560 aa12.45□□□□□ -0.42
CDC42BPA-208ENST00000442054 EIF4G1Q04637 1599 aaKnown RBP12.43□□□□□ -0.42
CDC42BPA-208ENST00000442054 BAZ1BQ9UIG0 1483 aaKnown RBP12.39□□□□□ -0.43
CDC42BPA-208ENST00000442054 CC2D2AQ9P2K1 1620 aa12.39□□□□□ -0.43
CDC42BPA-208ENST00000442054 BAZ1AQ9NRL2 1556 aaPredicted RBP12.32□□□□□ -0.44
CDC42BPA-208ENST00000442054 UNC13AQ9UPW8 1703 aa12.3□□□□□ -0.44
CDC42BPA-208ENST00000442054 FBLN2P98095 1184 aa12.28□□□□□ -0.44
CDC42BPA-208ENST00000442054 SMARCA2P51531 1590 aa12.27□□□□□ -0.45
CDC42BPA-208ENST00000442054 ATAD2BQ9ULI0 1458 aa12.26□□□□□ -0.45
CDC42BPA-208ENST00000442054 MROH2BQ7Z745 1585 aa12.19□□□□□ -0.46
CDC42BPA-208ENST00000442054 NCAPD3P42695 1498 aa12.19□□□□□ -0.46
CDC42BPA-208ENST00000442054 PDS5BQ9NTI5 1447 aa12.18□□□□□ -0.46
CDC42BPA-208ENST00000442054 RSF1Q96T23 1441 aaPredicted RBP12.17□□□□□ -0.46
CDC42BPA-208ENST00000442054 SMARCA4P51532 1647 aa12.14□□□□□ -0.47
CDC42BPA-208ENST00000442054 CADPSQ9ULU8 1353 aa12.11□□□□□ -0.47
CDC42BPA-208ENST00000442054 EHMT2Q96KQ7 1210 aa12.1□□□□□ -0.47
CDC42BPA-208ENST00000442054 FAM9AQ8IZU1 332 aaPredicted RBP12.08□□□□□ -0.48
CDC42BPA-208ENST00000442054 TTBK1Q5TCY1 1321 aaPredicted RBP12.06□□□□□ -0.48
CDC42BPA-208ENST00000442054 TRIM41Q8WV44 630 aa12.04□□□□□ -0.48
CDC42BPA-208ENST00000442054 NESP48681 1621 aa12.04□□□□□ -0.48
CDC42BPA-208ENST00000442054 CHMP7Q8WUX9 453 aaPredicted RBP11.99□□□□□ -0.49
CDC42BPA-208ENST00000442054 WIZO95785 1651 aa11.99□□□□□ -0.49
CDC42BPA-208ENST00000442054 RANGAP1P46060 587 aaPredicted RBP11.98□□□□□ -0.49
CDC42BPA-208ENST00000442054 HMGXB3Q12766 1538 aa11.96□□□□□ -0.49
CDC42BPA-208ENST00000442054 CEP164Q9UPV0 1460 aa11.96□□□□□ -0.5
CDC42BPA-208ENST00000442054 HRCP23327 699 aa11.96□□□□□ -0.5
CDC42BPA-208ENST00000442054 FANCD2Q9BXW9 1451 aa11.93□□□□□ -0.5
CDC42BPA-208ENST00000442054 CCDC88BA6NC98 1476 aa11.91□□□□□ -0.5
CDC42BPA-208ENST00000442054 OSCARQ8IYS5 282 aa11.91□□□□□ -0.5
CDC42BPA-208ENST00000442054 TOP2AP11388 1531 aaKnown RBP11.88□□□□□ -0.51
CDC42BPA-208ENST00000442054 TRHP20396 242 aaPredicted RBP11.84□□□□□ -0.51
CDC42BPA-208ENST00000442054 ATP1B4Q9UN42 357 aaPredicted RBP11.84□□□□□ -0.51
CDC42BPA-208ENST00000442054 MRC2Q9UBG0 1479 aa11.82□□□□□ -0.52
CDC42BPA-208ENST00000442054 TDRD9Q8NDG6 1382 aaKnown RBP11.81□□□□□ -0.52
CDC42BPA-208ENST00000442054 LAMC3Q9Y6N6 1575 aa11.81□□□□□ -0.52
CDC42BPA-208ENST00000442054 UBTFP17480 764 aaKnown RBP11.81□□□□□ -0.52
CDC42BPA-208ENST00000442054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.8□□□□□ -0.52
CDC42BPA-208ENST00000442054 HNRNPUL2Q1KMD3 747 aaKnown RBP11.8□□□□□ -0.52
CDC42BPA-208ENST00000442054 LOC105371045A0A1W2PR82 267 aa11.8□□□□□ -0.52
CDC42BPA-208ENST00000442054 NPM1P06748 294 aaKnown RBP eCLIP11.8□□□□□ -0.52
CDC42BPA-208ENST00000442054 SOGA1O94964 1423 aa11.78□□□□□ -0.52
CDC42BPA-208ENST00000442054 CFTRP13569 1480 aa11.77□□□□□ -0.52
CDC42BPA-208ENST00000442054 CYB5RLQ6IPT4 315 aa11.77□□□□□ -0.53
CDC42BPA-208ENST00000442054 CUX2O14529 1486 aa11.76□□□□□ -0.53
CDC42BPA-208ENST00000442054 DNAJC5Q9H3Z4 198 aa11.74□□□□□ -0.53
CDC42BPA-208ENST00000442054 PEG3Q9GZU2 1588 aa11.73□□□□□ -0.53
CDC42BPA-208ENST00000442054 WRNQ14191 1432 aaPredicted RBP eCLIP11.72□□□□□ -0.53
CDC42BPA-208ENST00000442054 ABCC8Q09428 1581 aa11.72□□□□□ -0.53
CDC42BPA-208ENST00000442054 PCGF6Q9BYE7 350 aa11.71□□□□□ -0.53
CDC42BPA-208ENST00000442054 AQRO60306 1485 aaKnown RBP eCLIP11.66□□□□□ -0.542e-6■■■■■ 28.8
CDC42BPA-208ENST00000442054 IFT140Q96RY7 1462 aa11.62□□□□□ -0.55
CDC42BPA-208ENST00000442054 RAD54L2Q9Y4B4 1467 aa11.62□□□□□ -0.55
CDC42BPA-208ENST00000442054 PPARGC1BQ86YN6 1023 aaKnown RBP11.62□□□□□ -0.55
CDC42BPA-208ENST00000442054 P3H3Q8IVL6 736 aa11.62□□□□□ -0.55
CDC42BPA-208ENST00000442054 ARID3CA6NKF2 412 aa11.62□□□□□ -0.55
CDC42BPA-208ENST00000442054 MYT1LQ9UL68 1186 aa11.61□□□□□ -0.55
CDC42BPA-208ENST00000442054 TRIM26Q12899 539 aaPredicted RBP11.6□□□□□ -0.55
CDC42BPA-208ENST00000442054 TOPBP1Q92547 1522 aa11.6□□□□□ -0.55
CDC42BPA-208ENST00000442054 APLP2Q06481 763 aa11.58□□□□□ -0.55
CDC42BPA-208ENST00000442054 FGD5Q6ZNL6 1462 aa11.58□□□□□ -0.56
CDC42BPA-208ENST00000442054 KIF27Q86VH2 1401 aa11.57□□□□□ -0.56
CDC42BPA-208ENST00000442054 URB2Q14146 1524 aaKnown RBP11.57□□□□□ -0.56
CDC42BPA-208ENST00000442054 CSRNP3Q8WYN3 585 aa11.56□□□□□ -0.56
CDC42BPA-208ENST00000442054 KIF21AQ7Z4S6 1674 aa11.53□□□□□ -0.56
CDC42BPA-208ENST00000442054 POLA1P09884 1462 aaPredicted RBP11.52□□□□□ -0.56
CDC42BPA-208ENST00000442054 GAPVD1Q14C86 1478 aa11.52□□□□□ -0.56
CDC42BPA-208ENST00000442054 JPH4Q96JJ6 628 aa11.52□□□□□ -0.57
CDC42BPA-208ENST00000442054 ZNF608Q9ULD9 1512 aaPredicted RBP11.52□□□□□ -0.57
CDC42BPA-208ENST00000442054 DNMBPQ6XZF7 1577 aa11.49□□□□□ -0.57
CDC42BPA-208ENST00000442054 GRIN2BQ13224 1484 aa11.49□□□□□ -0.57
CDC42BPA-208ENST00000442054 CARMIL1Q5VZK9 1371 aa11.48□□□□□ -0.57
CDC42BPA-208ENST00000442054 KCNH8Q96L42 1107 aa11.47□□□□□ -0.57
CDC42BPA-208ENST00000442054 WDR62O43379 1518 aa11.46□□□□□ -0.57
CDC42BPA-208ENST00000442054 SNAPC4Q5SXM2 1469 aa11.45□□□□□ -0.58
CDC42BPA-208ENST00000442054 CUX1P39880 1505 aa11.4□□□□□ -0.58
CDC42BPA-208ENST00000442054 CARMIL2Q6F5E8 1435 aa11.4□□□□□ -0.59
CDC42BPA-208ENST00000442054 THOC2Q8NI27 1593 aaKnown RBP11.39□□□□□ -0.59
CDC42BPA-208ENST00000442054 FHAD1B1AJZ9 1412 aa11.37□□□□□ -0.59
CDC42BPA-208ENST00000442054 CDK11AQ9UQ88 783 aaPredicted RBP11.36□□□□□ -0.59
CDC42BPA-208ENST00000442054 FAM69CQ0P6D2 419 aa11.36□□□□□ -0.59
CDC42BPA-208ENST00000442054 PLPPR3Q6T4P5 718 aa11.35□□□□□ -0.59
CDC42BPA-208ENST00000442054 SYNJ1O43426 1573 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms