RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 ARID3CA6NKF2 412 aa13.6□□□□□ -0.23
SNHG3-201ENST00000413987 UGGT2Q9NYU1 1516 aa13.6□□□□□ -0.23
SNHG3-201ENST00000413987 PCF11O94913 1555 aaKnown RBP13.6□□□□□ -0.23
SNHG3-201ENST00000413987 KIAA0556O60303 1618 aa13.58□□□□□ -0.24
SNHG3-201ENST00000413987 TRHP20396 242 aaPredicted RBP13.58□□□□□ -0.24
SNHG3-201ENST00000413987 ERCC6L2Q5T890 1561 aa13.56□□□□□ -0.24
SNHG3-201ENST00000413987 KANK4Q5T7N3 995 aaPredicted RBP13.56□□□□□ -0.24
SNHG3-201ENST00000413987 PDE4CQ08493 712 aa13.56□□□□□ -0.24
SNHG3-201ENST00000413987 ZMYND15Q9H091 742 aa13.56□□□□□ -0.24
SNHG3-201ENST00000413987 RSPH6AQ9H0K4 717 aa13.56□□□□□ -0.24
SNHG3-201ENST00000413987 PRG4Q92954 1404 aaPredicted RBP13.55□□□□□ -0.24
SNHG3-201ENST00000413987 CCER1Q8TC90 406 aaPredicted RBP13.55□□□□□ -0.24
SNHG3-201ENST00000413987 CLASP1Q7Z460 1538 aa13.52□□□□□ -0.24
SNHG3-201ENST00000413987 TAF7LQ5H9L4 462 aa13.52□□□□□ -0.24
SNHG3-201ENST00000413987 FMN1Q68DA7 1419 aa13.52□□□□□ -0.25
SNHG3-201ENST00000413987 LRRIQ1Q96JM4 1722 aa13.51□□□□□ -0.25
SNHG3-201ENST00000413987 CASKIN1Q8WXD9 1431 aa13.5□□□□□ -0.25
SNHG3-201ENST00000413987 PLB1Q6P1J6 1458 aa13.5□□□□□ -0.25
SNHG3-201ENST00000413987 ATXN8OSP0DMR3 200 aa13.49□□□□□ -0.25
SNHG3-201ENST00000413987 CARMIL2Q6F5E8 1435 aa13.49□□□□□ -0.25
SNHG3-201ENST00000413987 SHROOM2Q13796 1616 aa13.49□□□□□ -0.25
SNHG3-201ENST00000413987 FYCO1Q9BQS8 1478 aa13.49□□□□□ -0.25
SNHG3-201ENST00000413987 IFNLR1Q8IU57 520 aaPredicted RBP13.48□□□□□ -0.25
SNHG3-201ENST00000413987 OSCARQ8IYS5 282 aa13.48□□□□□ -0.25
SNHG3-201ENST00000413987 TIAM1Q13009 1591 aa13.47□□□□□ -0.25
SNHG3-201ENST00000413987 CDK13Q14004 1512 aaKnown RBP13.47□□□□□ -0.25
SNHG3-201ENST00000413987 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.46□□□□□ -0.25
SNHG3-201ENST00000413987 C1orf115Q9H7X2 142 aa13.46□□□□□ -0.25
SNHG3-201ENST00000413987 VASPP50552 380 aaPredicted RBP13.43□□□□□ -0.26
SNHG3-201ENST00000413987 NUP153P49790 1475 aaKnown RBP13.43□□□□□ -0.26
SNHG3-201ENST00000413987 PTPRGP23470 1445 aa13.43□□□□□ -0.26
SNHG3-201ENST00000413987 CFAP43Q8NDM7 1665 aa13.43□□□□□ -0.26
SNHG3-201ENST00000413987 RAPGEF6Q8TEU7 1601 aa13.42□□□□□ -0.26
SNHG3-201ENST00000413987 HNRNPUL2Q1KMD3 747 aaKnown RBP13.42□□□□□ -0.26
SNHG3-201ENST00000413987 LRRC9Q6ZRR7 1453 aa13.42□□□□□ -0.26
SNHG3-201ENST00000413987 HECW1Q76N89 1606 aa13.42□□□□□ -0.26
SNHG3-201ENST00000413987 EPRSP07814 1512 aaKnown RBP13.41□□□□□ -0.26
SNHG3-201ENST00000413987 MAGI3Q5TCQ9 1506 aa13.41□□□□□ -0.26
SNHG3-201ENST00000413987 POLR3GLQ9BT43 218 aa13.41□□□□□ -0.26
SNHG3-201ENST00000413987 ZNF316A6NFI3 1004 aaPredicted RBP13.39□□□□□ -0.27
SNHG3-201ENST00000413987 NEFLP07196 543 aa13.39□□□□□ -0.27
SNHG3-201ENST00000413987 KCTD17Q8N5Z5 321 aa13.39□□□□□ -0.27
SNHG3-201ENST00000413987 RAD21O60216 631 aa13.37□□□□□ -0.27
SNHG3-201ENST00000413987 ABCA8O94911 1581 aa13.37□□□□□ -0.27
SNHG3-201ENST00000413987 MTUS2Q5JR59 1369 aa13.37□□□□□ -0.27
SNHG3-201ENST00000413987 MAP3K1Q13233 1512 aa13.36□□□□□ -0.27
SNHG3-201ENST00000413987 PHLDB1Q86UU1 1377 aa13.35□□□□□ -0.27
SNHG3-201ENST00000413987 CLSPNQ9HAW4 1339 aa13.35□□□□□ -0.27
SNHG3-201ENST00000413987 NEUROD2Q15784 382 aa13.35□□□□□ -0.27
SNHG3-201ENST00000413987 CCDC18Q5T9S5 1454 aa13.34□□□□□ -0.27
SNHG3-201ENST00000413987 UACAQ9BZF9 1416 aa13.33□□□□□ -0.28
SNHG3-201ENST00000413987 RGS22Q8NE09 1264 aa13.32□□□□□ -0.28
SNHG3-201ENST00000413987 ATP10BO94823 1461 aa13.32□□□□□ -0.28
SNHG3-201ENST00000413987 ITGAEP38570 1179 aa13.29□□□□□ -0.28
SNHG3-201ENST00000413987 ARHGEF11O15085 1522 aa13.29□□□□□ -0.28
SNHG3-201ENST00000413987 EHBP1L1Q8N3D4 1523 aa13.29□□□□□ -0.28
SNHG3-201ENST00000413987 ABCC2Q92887 1545 aa13.29□□□□□ -0.28
SNHG3-201ENST00000413987 NCOA2Q15596 1464 aa13.29□□□□□ -0.28
SNHG3-201ENST00000413987 ECM2O94769 699 aaPredicted RBP13.28□□□□□ -0.28
SNHG3-201ENST00000413987 ADCY10Q96PN6 1610 aa13.27□□□□□ -0.28
SNHG3-201ENST00000413987 KIF14Q15058 1648 aa13.27□□□□□ -0.29
SNHG3-201ENST00000413987 SUPT6HQ7KZ85 1726 aaKnown RBP13.26□□□□□ -0.29
SNHG3-201ENST00000413987 FAM50AQ14320 339 aaKnown RBP13.25□□□□□ -0.29
SNHG3-201ENST00000413987 MTMR7Q9Y216 660 aa13.25□□□□□ -0.29
SNHG3-201ENST00000413987 CYB5RLQ6IPT4 315 aa13.25□□□□□ -0.29
SNHG3-201ENST00000413987 YTHDC1Q96MU7 727 aaKnown RBP13.25□□□□□ -0.29
SNHG3-201ENST00000413987 CCNB3Q8WWL7 1395 aa13.24□□□□□ -0.29
SNHG3-201ENST00000413987 ZNF428Q96B54 188 aa13.24□□□□□ -0.29
SNHG3-201ENST00000413987 RIMBP3CA6NJZ7 1639 aa13.24□□□□□ -0.29
SNHG3-201ENST00000413987 RIMBP3BA6NNM3 1639 aa13.24□□□□□ -0.29
SNHG3-201ENST00000413987 ZCCHC11Q5TAX3 1644 aaKnown RBP13.24□□□□□ -0.29
SNHG3-201ENST00000413987 RIMBP3Q9UFD9 1639 aa13.24□□□□□ -0.29
SNHG3-201ENST00000413987 TROQ12816 1431 aaPredicted RBP13.23□□□□□ -0.29
SNHG3-201ENST00000413987 RRBP1Q9P2E9 1410 aaKnown RBP13.23□□□□□ -0.29
SNHG3-201ENST00000413987 PLEKHD1A6NEE1 506 aa13.23□□□□□ -0.29
SNHG3-201ENST00000413987 RBM25P49756 843 aaKnown RBP13.23□□□□□ -0.29
SNHG3-201ENST00000413987 KCNH8Q96L42 1107 aa13.23□□□□□ -0.29
SNHG3-201ENST00000413987 BCCIPQ9P287 314 aaKnown RBP eCLIP13.21□□□□□ -0.29
SNHG3-201ENST00000413987 FGD6Q6ZV73 1430 aa13.21□□□□□ -0.3
SNHG3-201ENST00000413987 MYOM3Q5VTT5 1437 aa13.2□□□□□ -0.3
SNHG3-201ENST00000413987 UHRF1BP1LA0JNW5 1464 aa13.2□□□□□ -0.3
SNHG3-201ENST00000413987 KDM5BQ9UGL1 1544 aa13.19□□□□□ -0.3
SNHG3-201ENST00000413987 APBB1O00213 710 aa13.19□□□□□ -0.3
SNHG3-201ENST00000413987 MIER1Q8N108 512 aa13.19□□□□□ -0.3
SNHG3-201ENST00000413987 ANP32EQ9BTT0 268 aa13.19□□□□□ -0.3
SNHG3-201ENST00000413987 ZNF644Q9H582 1327 aaPredicted RBP13.19□□□□□ -0.3
SNHG3-201ENST00000413987 LMOD2Q6P5Q4 547 aa13.17□□□□□ -0.3
SNHG3-201ENST00000413987 RGL2O15211 777 aa13.16□□□□□ -0.3
SNHG3-201ENST00000413987 ZNF777Q9ULD5 760 aaPredicted RBP13.16□□□□□ -0.3
SNHG3-201ENST00000413987 FOXD4L5Q5VV16 416 aaPredicted RBP13.15□□□□□ -0.3
SNHG3-201ENST00000413987 TTC37Q6PGP7 1564 aa13.15□□□□□ -0.3
SNHG3-201ENST00000413987 FOXD4L4Q8WXT5 416 aaPredicted RBP13.15□□□□□ -0.3
SNHG3-201ENST00000413987 PTPN23Q9H3S7 1636 aa13.15□□□□□ -0.3
SNHG3-201ENST00000413987 GPATCH8Q9UKJ3 1502 aaKnown RBP13.14□□□□□ -0.31
SNHG3-201ENST00000413987 ABCC10Q5T3U5 1492 aa13.14□□□□□ -0.31
SNHG3-201ENST00000413987 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.13□□□□□ -0.31
SNHG3-201ENST00000413987 ASXL2Q76L83 1435 aa13.13□□□□□ -0.31
SNHG3-201ENST00000413987 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.12□□□□□ -0.31
SNHG3-201ENST00000413987 CFDP1Q9UEE9 299 aaPredicted RBP13.12□□□□□ -0.31
SNHG3-201ENST00000413987 CDC42BPAQ5VT25 1732 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms