RNA–Protein interactions for RNA: ENST00000413987.1

SNHG3-201, Transcript of small nucleolar RNA host gene 3, humanhuman

TSL 1 (best)

Gene SNHG3, Length 2,201 nt, Biotype retained intron, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG3-201ENST00000413987 DKC1O60832 514 aaKnown RBP eCLIP10.08□□□□□ -0.81e-323■■■■■ 48.7
SNHG3-201ENST00000413987 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.95□□□□□ -0.984e-55■■■■□ 25.9
SNHG3-201ENST00000413987 GPKOWQ92917 476 aaPredicted RBP eCLIP10.09□□□□□ -0.792e-47■□□□□ 10.3
SNHG3-201ENST00000413987 FMR1Q06787 632 aaKnown RBP eCLIP10.69□□□□□ -0.77e-47■■■■■ 392
SNHG3-201ENST00000413987 CSTF2P33240 577 aaKnown RBP eCLIP9.41□□□□□ -0.98e-46■■■■■ 44.8
SNHG3-201ENST00000413987 NIPBLQ6KC79 2804 aaeCLIP6.96□□□□□ -1.293e-44■■□□□ 13
SNHG3-201ENST00000413987 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.82□□□□□ -0.685e-43■□□□□ 9.5
SNHG3-201ENST00000413987 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.06□□□□□ -1.283e-34■■■■■ 63.2
SNHG3-201ENST00000413987 SF3B4Q15427 424 aaKnown RBP eCLIP9.01□□□□□ -0.971e-33■■■■■ 31.6
SNHG3-201ENST00000413987 NCBP2P52298 156 aaKnown RBP eCLIP8.2□□□□□ -1.14e-33■■■■■ 42.7
SNHG3-201ENST00000413987 KHSRPQ92945 711 aaKnown RBP eCLIP9.14□□□□□ -0.954e-29■■■■■ 27.3
SNHG3-201ENST00000413987 AQRO60306 1485 aaKnown RBP eCLIP14.11□□□□□ -0.156e-27■■■■■ 37.7
SNHG3-201ENST00000413987 NOLC1Q14978 699 aaKnown RBP eCLIP10.89□□□□□ -0.673e-26■■□□□ 13.5
SNHG3-201ENST00000413987 SRSF1Q07955 248 aaKnown RBP eCLIP8.15□□□□□ -1.13e-23■■□□□ 12.7
SNHG3-201ENST00000413987 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.13□□□□□ -0.953e-23■■■□□ 18.2
SNHG3-201ENST00000413987 TIA1P31483 386 aaKnown RBP eCLIP8.6□□□□□ -1.032e-22■■■■■ 27.6
SNHG3-201ENST00000413987 EFTUD2Q15029 972 aaKnown RBP eCLIP9.44□□□□□ -0.92e-21■■■■□ 22.3
SNHG3-201ENST00000413987 ZC3H11AO75152 810 aaKnown RBP eCLIP9.43□□□□□ -0.94e-20■■■■■ 59.1
SNHG3-201ENST00000413987 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.12□□□□□ -0.792e-18■■■■□ 23.2
SNHG3-201ENST00000413987 RBM22Q9NW64 420 aaKnown RBP eCLIP8.86□□□□□ -0.992e-18■■□□□ 13.5
SNHG3-201ENST00000413987 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.99□□□□□ -0.973e-18■□□□□ 11.2
SNHG3-201ENST00000413987 HNRNPCP07910 306 aaKnown RBP eCLIP10.64□□□□□ -0.711e-17■■□□□ 13.5
SNHG3-201ENST00000413987 CPSF6Q16630 551 aaKnown RBP eCLIP8.51□□□□□ -1.057e-16■■■■■ 39.3
SNHG3-201ENST00000413987 AATFQ9NY61 560 aaKnown RBP eCLIP10.41□□□□□ -0.742e-14■□□□□ 11.3
SNHG3-201ENST00000413987 SF3A3Q12874 501 aaKnown RBP eCLIP9.63□□□□□ -0.871e-13■□□□□ 9.9
SNHG3-201ENST00000413987 PPIGQ13427 754 aaKnown RBP eCLIP9.14□□□□□ -0.954e-13■■■■□ 20.7
SNHG3-201ENST00000413987 U2AF2P26368 475 aaKnown RBP eCLIP10.77□□□□□ -0.692e-12■■□□□ 11.6
SNHG3-201ENST00000413987 RBFOX2O43251 390 aaKnown RBP eCLIP7.55□□□□□ -1.27e-11■■■■□ 20.7
SNHG3-201ENST00000413987 SRSF9Q13242 221 aaKnown RBP eCLIP7.21□□□□□ -1.251e-10■■□□□ 13
SNHG3-201ENST00000413987 METAP2P50579 478 aaKnown RBP eCLIP10.18□□□□□ -0.786e-10■□□□□ 9.1
SNHG3-201ENST00000413987 RBM15Q96T37 977 aaKnown RBP eCLIP9.41□□□□□ -0.91e-8■■□□□ 14.3
SNHG3-201ENST00000413987 TIAL1Q01085 375 aaKnown RBP eCLIP8.68□□□□□ -1.025e-7■■□□□ 14.4
SNHG3-201ENST00000413987 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.66□□□□□ -0.861e-6■□□□□ 9.2
SNHG3-201ENST00000413987 HNRNPMP52272 730 aaKnown RBP eCLIP13.04□□□□□ -0.321e-6■■□□□ 12.6
SNHG3-201ENST00000413987 SF3B1O75533 1304 aaKnown RBP eCLIP9.28□□□□□ -0.924e-6■■■■□ 26
SNHG3-201ENST00000413987 ILF3Q12906 894 aaKnown RBP eCLIP8.41□□□□□ -1.066e-6■□□□□ 8.6
Retrieved 36 of 36 RNA–protein pairs in 9.3 ms