RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 SPRYD3Q8NCJ5 442 aa18.54■□□□□ 0.56
RTF1-201ENST00000389629 CCDC184Q52MB2 194 aa18.53■□□□□ 0.56
RTF1-201ENST00000389629 CADPSQ9ULU8 1353 aa18.53■□□□□ 0.56
RTF1-201ENST00000389629 CHGAP10645 457 aaKnown RBP18.52■□□□□ 0.56
RTF1-201ENST00000389629 SLKQ9H2G2 1235 aaPredicted RBP18.51■□□□□ 0.55
RTF1-201ENST00000389629 CCDC7Q96M83 1385 aa18.51■□□□□ 0.55
RTF1-201ENST00000389629 TOP2BQ02880 1626 aa18.5■□□□□ 0.55
RTF1-201ENST00000389629 EXOC6Q8TAG9 804 aa18.5■□□□□ 0.55
RTF1-201ENST00000389629 USP35Q9P2H5 1018 aa18.5■□□□□ 0.55
RTF1-201ENST00000389629 CNTLNQ9NXG0 1405 aa18.5■□□□□ 0.55
RTF1-201ENST00000389629 GSE1Q14687 1217 aa18.49■□□□□ 0.55
RTF1-201ENST00000389629 RALBP1Q15311 655 aa18.48■□□□□ 0.55
RTF1-201ENST00000389629 KIF7Q2M1P5 1343 aa18.48■□□□□ 0.55
RTF1-201ENST00000389629 GZF1Q9H116 711 aaPredicted RBP18.48■□□□□ 0.55
RTF1-201ENST00000389629 KTN1Q86UP2 1357 aaKnown RBP18.47■□□□□ 0.55
RTF1-201ENST00000389629 FRAT1Q92837 279 aaPredicted RBP18.46■□□□□ 0.55
RTF1-201ENST00000389629 NEUROD2Q15784 382 aa18.46■□□□□ 0.55
RTF1-201ENST00000389629 FGD5Q6ZNL6 1462 aa18.45■□□□□ 0.54
RTF1-201ENST00000389629 TIAM1Q13009 1591 aa18.45■□□□□ 0.54
RTF1-201ENST00000389629 PLIN1O60240 522 aa18.44■□□□□ 0.54
RTF1-201ENST00000389629 RRP1P56182 461 aaKnown RBP18.43■□□□□ 0.54
RTF1-201ENST00000389629 NCLP19338 710 aaKnown RBP18.43■□□□□ 0.54
RTF1-201ENST00000389629 L1TD1Q5T7N2 865 aaKnown RBP18.43■□□□□ 0.54
RTF1-201ENST00000389629 PNNQ9H307 717 aaKnown RBP18.42■□□□□ 0.54
RTF1-201ENST00000389629 ST20-MTHFSA0A0A6YYL1 179 aa18.42■□□□□ 0.54
RTF1-201ENST00000389629 NUP155O75694 1391 aa18.41■□□□□ 0.54
RTF1-201ENST00000389629 MYOM3Q5VTT5 1437 aa18.41■□□□□ 0.54
RTF1-201ENST00000389629 TMF1P82094 1093 aa18.41■□□□□ 0.54
RTF1-201ENST00000389629 NLRP13Q86W25 1043 aa18.41■□□□□ 0.54
RTF1-201ENST00000389629 BRPF3Q9ULD4 1205 aa18.41■□□□□ 0.54
RTF1-201ENST00000389629 ROCK2O75116 1388 aaKnown RBP18.4■□□□□ 0.54
RTF1-201ENST00000389629 USP47Q96K76 1375 aa18.4■□□□□ 0.54
RTF1-201ENST00000389629 CUX1P39880 1505 aa18.4■□□□□ 0.54
RTF1-201ENST00000389629 MYBBP1AQ9BQG0 1328 aaKnown RBP18.38■□□□□ 0.53
RTF1-201ENST00000389629 CASKIN1Q8WXD9 1431 aa18.38■□□□□ 0.53
RTF1-201ENST00000389629 AKNAQ7Z591 1439 aa18.38■□□□□ 0.53
RTF1-201ENST00000389629 KIF15Q9NS87 1388 aa18.38■□□□□ 0.53
RTF1-201ENST00000389629 CDCA8Q53HL2 280 aa18.37■□□□□ 0.53
RTF1-201ENST00000389629 PDE3BQ13370 1112 aa18.37■□□□□ 0.53
RTF1-201ENST00000389629 RAD54L2Q9Y4B4 1467 aa18.36■□□□□ 0.53
RTF1-201ENST00000389629 NCOA2Q15596 1464 aa18.35■□□□□ 0.53
RTF1-201ENST00000389629 MAPKBP1O60336 1514 aa18.35■□□□□ 0.53
RTF1-201ENST00000389629 GOLGA6L22H0YM25 854 aa18.34■□□□□ 0.53
RTF1-201ENST00000389629 NBPF8Q3BBV2 869 aa18.34■□□□□ 0.53
RTF1-201ENST00000389629 TNNT2P45379 298 aaPredicted RBP18.33■□□□□ 0.53
RTF1-201ENST00000389629 RSPH6AQ9H0K4 717 aa18.33■□□□□ 0.53
RTF1-201ENST00000389629 CRBNQ96SW2 442 aa18.33■□□□□ 0.52
RTF1-201ENST00000389629 VSIG10Q8N0Z9 540 aa18.33■□□□□ 0.52
RTF1-201ENST00000389629 HFM1A2PYH4 1435 aa18.32■□□□□ 0.52
RTF1-201ENST00000389629 SLC24A1O60721 1099 aa18.32■□□□□ 0.52
RTF1-201ENST00000389629 ANKRD30AQ9BXX3 1397 aa18.32■□□□□ 0.52
RTF1-201ENST00000389629 FANCD2Q9BXW9 1451 aa18.32■□□□□ 0.52
RTF1-201ENST00000389629 FYCO1Q9BQS8 1478 aa18.32■□□□□ 0.52
RTF1-201ENST00000389629 NFKBIBQ15653 356 aa18.31■□□□□ 0.52
RTF1-201ENST00000389629 ZNF644Q9H582 1327 aaPredicted RBP18.31■□□□□ 0.52
RTF1-201ENST00000389629 C11orf95C9JLR9 678 aaPredicted RBP18.3■□□□□ 0.52
RTF1-201ENST00000389629 FTSJ3Q8IY81 847 aaKnown RBP18.3■□□□□ 0.52
RTF1-201ENST00000389629 ARID3AQ99856 593 aa18.29■□□□□ 0.52
RTF1-201ENST00000389629 SENP3Q9H4L4 574 aaPredicted RBP18.29■□□□□ 0.52
RTF1-201ENST00000389629 NCAPD3P42695 1498 aa18.28■□□□□ 0.52
RTF1-201ENST00000389629 CFTRP13569 1480 aa18.28■□□□□ 0.52
RTF1-201ENST00000389629 GOLGA6L3A6NEY3 463 aa18.28■□□□□ 0.52
RTF1-201ENST00000389629 MS4A1P11836 297 aa18.27■□□□□ 0.52
RTF1-201ENST00000389629 DNTTIP2Q5QJE6 756 aaKnown RBP18.27■□□□□ 0.52
RTF1-201ENST00000389629 PTMAP06454 111 aaKnown RBP18.26■□□□□ 0.51
RTF1-201ENST00000389629 HSP90AB1P08238 724 aaKnown RBP18.26■□□□□ 0.51
RTF1-201ENST00000389629 TPRNQ4KMQ1 711 aa18.26■□□□□ 0.51
RTF1-201ENST00000389629 HSP90AA2PQ14568 343 aaPredicted RBP18.26■□□□□ 0.51
RTF1-201ENST00000389629 GOLGA2Q08379 1002 aa18.25■□□□□ 0.51
RTF1-201ENST00000389629 NAIPQ13075 1403 aa18.25■□□□□ 0.51
RTF1-201ENST00000389629 CCDC146Q8IYE0 955 aa18.25■□□□□ 0.51
RTF1-201ENST00000389629 PANK3Q9H999 370 aa18.24■□□□□ 0.51
RTF1-201ENST00000389629 HSCBQ8IWL3 235 aa18.24■□□□□ 0.51
RTF1-201ENST00000389629 FAM161AQ3B820 660 aa18.24■□□□□ 0.51
RTF1-201ENST00000389629 HNRNPMP52272 730 aaKnown RBP eCLIP18.23■□□□□ 0.513e-6■■□□□ 12.2
RTF1-201ENST00000389629 CDCA7LQ96GN5 454 aa18.22■□□□□ 0.51
RTF1-201ENST00000389629 CFAP53Q96M91 514 aa18.22■□□□□ 0.51
RTF1-201ENST00000389629 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.21■□□□□ 0.51
RTF1-201ENST00000389629 CENPQQ7L2Z9 268 aaPredicted RBP18.21■□□□□ 0.5
RTF1-201ENST00000389629 SMG6Q86US8 1419 aaKnown RBP18.21■□□□□ 0.5
RTF1-201ENST00000389629 PNISRQ8TF01 805 aaKnown RBP18.2■□□□□ 0.5
RTF1-201ENST00000389629 PCF11O94913 1555 aaKnown RBP18.2■□□□□ 0.5
RTF1-201ENST00000389629 ZBTB7CA1YPR0 619 aa18.2■□□□□ 0.5
RTF1-201ENST00000389629 MSNP26038 577 aaKnown RBP18.2■□□□□ 0.5
RTF1-201ENST00000389629 MYH16Q9H6N6 1097 aa18.18■□□□□ 0.5
RTF1-201ENST00000389629 FRAT2O75474 233 aaPredicted RBP18.17■□□□□ 0.5
RTF1-201ENST00000389629 MAP3K1Q13233 1512 aa18.17■□□□□ 0.5
RTF1-201ENST00000389629 PDS5BQ9NTI5 1447 aa18.16■□□□□ 0.5
RTF1-201ENST00000389629 MFAP1P55081 439 aaKnown RBP18.15■□□□□ 0.5
RTF1-201ENST00000389629 BACH2Q9BYV9 841 aa18.14■□□□□ 0.49
RTF1-201ENST00000389629 BICRAQ9NZM4 1560 aa18.14■□□□□ 0.49
RTF1-201ENST00000389629 GAPVD1Q14C86 1478 aa18.14■□□□□ 0.49
RTF1-201ENST00000389629 EFCAB5A4FU69 1503 aa18.14■□□□□ 0.49
RTF1-201ENST00000389629 BRD4O60885 1362 aaPredicted RBP18.14■□□□□ 0.49
RTF1-201ENST00000389629 CLUAP1Q96AJ1 413 aa18.13■□□□□ 0.49
RTF1-201ENST00000389629 PLCB2Q00722 1185 aa18.12■□□□□ 0.49
RTF1-201ENST00000389629 MORC1Q86VD1 984 aa18.12■□□□□ 0.49
RTF1-201ENST00000389629 U2SURPO15042 1029 aaKnown RBP18.11■□□□□ 0.49
RTF1-201ENST00000389629 FOXD4L1Q9NU39 408 aa18.1■□□□□ 0.49
RTF1-201ENST00000389629 PEG3Q9GZU2 1588 aa18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms