RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 NISCHQ9Y2I1 1504 aa25.4■■□□□ 1.66
RTF1-201ENST00000389629 SUPT5HO00267 1087 aaKnown RBP23.94■■□□□ 1.42
RTF1-201ENST00000389629 DCAF8L2P0C7V8 631 aa23.87■■□□□ 1.41
RTF1-201ENST00000389629 SHROOM4Q9ULL8 1493 aa23.78■■□□□ 1.4
RTF1-201ENST00000389629 PCGF6Q9BYE7 350 aa23.18■■□□□ 1.3
RTF1-201ENST00000389629 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
RTF1-201ENST00000389629 HRCP23327 699 aa22.7■■□□□ 1.22
RTF1-201ENST00000389629 PELP1Q8IZL8 1130 aaKnown RBP22.6■■□□□ 1.21
RTF1-201ENST00000389629 PPARGC1BQ86YN6 1023 aaKnown RBP22.49■■□□□ 1.19
RTF1-201ENST00000389629 FAM9AQ8IZU1 332 aaPredicted RBP22.39■■□□□ 1.17
RTF1-201ENST00000389629 CHIC1Q5VXU3 224 aa22.36■■□□□ 1.17
RTF1-201ENST00000389629 ZEB1P37275 1124 aaPredicted RBP22.21■■□□□ 1.15
RTF1-201ENST00000389629 LOC105371045A0A1W2PR82 267 aa22.18■■□□□ 1.14
RTF1-201ENST00000389629 CENPBP07199 599 aaPredicted RBP22.11■■□□□ 1.13
RTF1-201ENST00000389629 TRIM26Q12899 539 aaPredicted RBP22.1■■□□□ 1.13
RTF1-201ENST00000389629 TTBK1Q5TCY1 1321 aaPredicted RBP22.09■■□□□ 1.13
RTF1-201ENST00000389629 TRIM41Q8WV44 630 aa22.07■■□□□ 1.12
RTF1-201ENST00000389629 CCER1Q8TC90 406 aaPredicted RBP21.98■■□□□ 1.11
RTF1-201ENST00000389629 MYT1Q01538 1121 aa21.95■■□□□ 1.1
RTF1-201ENST00000389629 YTHDC1Q96MU7 727 aaKnown RBP21.86■■□□□ 1.09
RTF1-201ENST00000389629 APLP2Q06481 763 aa21.53■■□□□ 1.04
RTF1-201ENST00000389629 MYO15BQ96JP2 1530 aa21.51■■□□□ 1.03
RTF1-201ENST00000389629 GTF3C3Q9Y5Q9 886 aa21.43■■□□□ 1.02
RTF1-201ENST00000389629 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.43■■□□□ 1.02
RTF1-201ENST00000389629 UBTFP17480 764 aaKnown RBP21.39■■□□□ 1.01
RTF1-201ENST00000389629 DIEXFQ68CQ4 756 aaKnown RBP21.36■■□□□ 1.01
RTF1-201ENST00000389629 RANGAP1P46060 587 aaPredicted RBP21.36■■□□□ 1.01
RTF1-201ENST00000389629 DCAF1Q9Y4B6 1507 aa21.32■■□□□ 1
RTF1-201ENST00000389629 ZCCHC6Q5VYS8 1495 aaKnown RBP21.31■■□□□ 1
RTF1-201ENST00000389629 SCAF1Q9H7N4 1312 aaKnown RBP21.28■■□□□ 1
RTF1-201ENST00000389629 ACIN1Q9UKV3 1341 aaKnown RBP21.24■□□□□ 0.99
RTF1-201ENST00000389629 ERICH6Q7L0X2 663 aa21.23■□□□□ 0.99
RTF1-201ENST00000389629 HNRNPUL2Q1KMD3 747 aaKnown RBP21.06■□□□□ 0.96
RTF1-201ENST00000389629 NEUROD1Q13562 356 aa21.03■□□□□ 0.96
RTF1-201ENST00000389629 NEFLP07196 543 aa21.02■□□□□ 0.96
RTF1-201ENST00000389629 ZNF316A6NFI3 1004 aaPredicted RBP20.79■□□□□ 0.92
RTF1-201ENST00000389629 CCDC180Q9P1Z9 1646 aa20.76■□□□□ 0.91
RTF1-201ENST00000389629 BCANQ96GW7 911 aa20.75■□□□□ 0.91
RTF1-201ENST00000389629 ITGAEP38570 1179 aa20.72■□□□□ 0.91
RTF1-201ENST00000389629 ATP1B4Q9UN42 357 aaPredicted RBP20.72■□□□□ 0.91
RTF1-201ENST00000389629 SCRIBQ14160 1630 aa20.59■□□□□ 0.89
RTF1-201ENST00000389629 ABCC9O60706 1549 aa20.53■□□□□ 0.88
RTF1-201ENST00000389629 RSF1Q96T23 1441 aaPredicted RBP20.51■□□□□ 0.87
RTF1-201ENST00000389629 CSRNP3Q8WYN3 585 aa20.5■□□□□ 0.87
RTF1-201ENST00000389629 MIER1Q8N108 512 aa20.43■□□□□ 0.86
RTF1-201ENST00000389629 PABPN1Q86U42 306 aaKnown RBP eCLIP20.29■□□□□ 0.84
RTF1-201ENST00000389629 CNGB1Q14028 1251 aaPredicted RBP20.29■□□□□ 0.84
RTF1-201ENST00000389629 FKBP8Q14318 412 aa20.24■□□□□ 0.83
RTF1-201ENST00000389629 FAM50AQ14320 339 aaKnown RBP20.2■□□□□ 0.82
RTF1-201ENST00000389629 CEP162Q5TB80 1403 aa20.19■□□□□ 0.82
RTF1-201ENST00000389629 RTL5Q5HYW3 569 aaPredicted RBP20.18■□□□□ 0.82
RTF1-201ENST00000389629 CDK11AQ9UQ88 783 aaPredicted RBP20.16■□□□□ 0.82
RTF1-201ENST00000389629 RB1CC1Q8TDY2 1594 aa20.14■□□□□ 0.81
RTF1-201ENST00000389629 POLR3GLQ9BT43 218 aa20.14■□□□□ 0.81
RTF1-201ENST00000389629 CLSPNQ9HAW4 1339 aa20.12■□□□□ 0.81
RTF1-201ENST00000389629 ANP32EQ9BTT0 268 aa20.1■□□□□ 0.81
RTF1-201ENST00000389629 ANP32CO43423 234 aa20.09■□□□□ 0.81
RTF1-201ENST00000389629 CECR2Q9BXF3 1484 aa20.03■□□□□ 0.8
RTF1-201ENST00000389629 DAXXQ9UER7 740 aaPredicted RBP20.01■□□□□ 0.79
RTF1-201ENST00000389629 TNIKQ9UKE5 1360 aa20■□□□□ 0.79
RTF1-201ENST00000389629 CLIP1P30622 1438 aa19.98■□□□□ 0.79
RTF1-201ENST00000389629 DDX10Q13206 875 aaKnown RBP19.98■□□□□ 0.79
RTF1-201ENST00000389629 TRIM52Q96A61 297 aa19.98■□□□□ 0.79
RTF1-201ENST00000389629 BCL11AQ9H165 835 aa19.95■□□□□ 0.78
RTF1-201ENST00000389629 SUPT16HQ9Y5B9 1047 aaKnown RBP19.95■□□□□ 0.78
RTF1-201ENST00000389629 GOLGA3Q08378 1498 aa19.92■□□□□ 0.78
RTF1-201ENST00000389629 SOGA1O94964 1423 aa19.89■□□□□ 0.77
RTF1-201ENST00000389629 EEA1Q15075 1411 aa19.88■□□□□ 0.77
RTF1-201ENST00000389629 P3H3Q8IVL6 736 aa19.87■□□□□ 0.77
RTF1-201ENST00000389629 MROH2BQ7Z745 1585 aa19.84■□□□□ 0.77
RTF1-201ENST00000389629 IRX6P78412 446 aaPredicted RBP19.84■□□□□ 0.77
RTF1-201ENST00000389629 NBR1Q14596 966 aa19.83■□□□□ 0.76
RTF1-201ENST00000389629 HNRNPUQ00839 825 aaKnown RBP eCLIP19.81■□□□□ 0.76
RTF1-201ENST00000389629 HIRIP3Q9BW71 556 aaPredicted RBP19.81■□□□□ 0.76
RTF1-201ENST00000389629 CCDC88BA6NC98 1476 aa19.78■□□□□ 0.76
RTF1-201ENST00000389629 ABCC8Q09428 1581 aa19.77■□□□□ 0.76
RTF1-201ENST00000389629 WRNQ14191 1432 aaPredicted RBP eCLIP19.76■□□□□ 0.75
RTF1-201ENST00000389629 ANP32AP39687 249 aaKnown RBP19.73■□□□□ 0.75
RTF1-201ENST00000389629 NPM2Q86SE8 214 aaKnown RBP19.73■□□□□ 0.75
RTF1-201ENST00000389629 CEP164Q9UPV0 1460 aa19.71■□□□□ 0.75
RTF1-201ENST00000389629 TSHZ2Q9NRE2 1034 aa19.7■□□□□ 0.74
RTF1-201ENST00000389629 NACADO15069 1562 aa19.68■□□□□ 0.74
RTF1-201ENST00000389629 TONSLQ96HA7 1378 aa19.67■□□□□ 0.74
RTF1-201ENST00000389629 EIF5BO60841 1220 aaKnown RBP19.67■□□□□ 0.74
RTF1-201ENST00000389629 BAZ1AQ9NRL2 1556 aaPredicted RBP19.67■□□□□ 0.74
RTF1-201ENST00000389629 WIZO95785 1651 aa19.65■□□□□ 0.74
RTF1-201ENST00000389629 FAM9BQ8IZU0 186 aa19.62■□□□□ 0.73
RTF1-201ENST00000389629 MYT1LQ9UL68 1186 aa19.6■□□□□ 0.73
RTF1-201ENST00000389629 RBM19Q9Y4C8 960 aaKnown RBP19.6■□□□□ 0.73
RTF1-201ENST00000389629 ZNF326Q5BKZ1 582 aaKnown RBP19.59■□□□□ 0.73
RTF1-201ENST00000389629 VPS8Q8N3P4 1428 aa19.56■□□□□ 0.72
RTF1-201ENST00000389629 SIN3AQ96ST3 1273 aa19.56■□□□□ 0.72
RTF1-201ENST00000389629 ZBTB47Q9UFB7 747 aaPredicted RBP19.51■□□□□ 0.71
RTF1-201ENST00000389629 RUSC2Q8N2Y8 1516 aa19.51■□□□□ 0.71
RTF1-201ENST00000389629 KANK4Q5T7N3 995 aaPredicted RBP19.5■□□□□ 0.71
RTF1-201ENST00000389629 ARID3CA6NKF2 412 aa19.49■□□□□ 0.71
RTF1-201ENST00000389629 CCDC136Q96JN2 1154 aa19.47■□□□□ 0.71
RTF1-201ENST00000389629 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
RTF1-201ENST00000389629 CHIC2Q9UKJ5 165 aa19.43■□□□□ 0.7
RTF1-201ENST00000389629 KCNH8Q96L42 1107 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms