RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 LAS1LQ9Y4W2 734 aaKnown RBP11.03□□□□□ -0.64
HPS4-201ENST00000336873 FGD6Q6ZV73 1430 aa11.03□□□□□ -0.64
HPS4-201ENST00000336873 NUP155O75694 1391 aa11.02□□□□□ -0.64
HPS4-201ENST00000336873 PLIN1O60240 522 aa11.02□□□□□ -0.65
HPS4-201ENST00000336873 LRRIQ1Q96JM4 1722 aa11.01□□□□□ -0.65
HPS4-201ENST00000336873 DNMBPQ6XZF7 1577 aa11□□□□□ -0.65
HPS4-201ENST00000336873 RTN4Q9NQC3 1192 aaKnown RBP11□□□□□ -0.65
HPS4-201ENST00000336873 ZBTB47Q9UFB7 747 aaPredicted RBP11□□□□□ -0.65
HPS4-201ENST00000336873 LAMC3Q9Y6N6 1575 aa10.99□□□□□ -0.65
HPS4-201ENST00000336873 SAFB2Q14151 953 aaKnown RBP eCLIP10.99□□□□□ -0.65
HPS4-201ENST00000336873 JPH4Q96JJ6 628 aa10.99□□□□□ -0.65
HPS4-201ENST00000336873 RGS3P49796 1198 aa10.98□□□□□ -0.65
HPS4-201ENST00000336873 MRC2Q9UBG0 1479 aa10.98□□□□□ -0.65
HPS4-201ENST00000336873 NPM1P06748 294 aaKnown RBP eCLIP10.98□□□□□ -0.65
HPS4-201ENST00000336873 NUTM2DQ5VT03 806 aaPredicted RBP10.98□□□□□ -0.65
HPS4-201ENST00000336873 KIF7Q2M1P5 1343 aa10.98□□□□□ -0.65
HPS4-201ENST00000336873 WDR43Q15061 677 aaKnown RBP eCLIP10.97□□□□□ -0.65
HPS4-201ENST00000336873 SKAP1Q86WV1 359 aa10.96□□□□□ -0.65
HPS4-201ENST00000336873 NCOA2Q15596 1464 aa10.96□□□□□ -0.65
HPS4-201ENST00000336873 TIAM1Q13009 1591 aa10.95□□□□□ -0.66
HPS4-201ENST00000336873 URB2Q14146 1524 aaKnown RBP10.95□□□□□ -0.66
HPS4-201ENST00000336873 PTPRKQ15262 1439 aa10.95□□□□□ -0.66
HPS4-201ENST00000336873 CARMIL2Q6F5E8 1435 aa10.95□□□□□ -0.66
HPS4-201ENST00000336873 ABCA10Q8WWZ4 1543 aa10.95□□□□□ -0.66
HPS4-201ENST00000336873 PLEKHG5O94827 1062 aa10.94□□□□□ -0.66
HPS4-201ENST00000336873 CCDC146Q8IYE0 955 aa10.93□□□□□ -0.66
HPS4-201ENST00000336873 GRIN2BQ13224 1484 aa10.93□□□□□ -0.66
HPS4-201ENST00000336873 MYOM3Q5VTT5 1437 aa10.93□□□□□ -0.66
HPS4-201ENST00000336873 CFAP43Q8NDM7 1665 aa10.92□□□□□ -0.66
HPS4-201ENST00000336873 NBPF1Q3BBV0 1214 aa10.92□□□□□ -0.66
HPS4-201ENST00000336873 KNSTRNQ9Y448 316 aa10.92□□□□□ -0.66
HPS4-201ENST00000336873 DENND4BO75064 1496 aaPredicted RBP10.92□□□□□ -0.66
HPS4-201ENST00000336873 UACAQ9BZF9 1416 aa10.92□□□□□ -0.66
HPS4-201ENST00000336873 FRAT1Q92837 279 aaPredicted RBP10.91□□□□□ -0.66
HPS4-201ENST00000336873 CDCA7LQ96GN5 454 aa10.91□□□□□ -0.66
HPS4-201ENST00000336873 SLC4A3P48751 1232 aa10.91□□□□□ -0.66
HPS4-201ENST00000336873 EXOC6Q8TAG9 804 aa10.91□□□□□ -0.66
HPS4-201ENST00000336873 ROCK2O75116 1388 aaKnown RBP10.91□□□□□ -0.66
HPS4-201ENST00000336873 PPM1GO15355 546 aaPredicted RBP10.9□□□□□ -0.66
HPS4-201ENST00000336873 PCF11O94913 1555 aaKnown RBP10.9□□□□□ -0.66
HPS4-201ENST00000336873 CASKIN1Q8WXD9 1431 aa10.9□□□□□ -0.66
HPS4-201ENST00000336873 IFT140Q96RY7 1462 aa10.9□□□□□ -0.66
HPS4-201ENST00000336873 USP47Q96K76 1375 aa10.89□□□□□ -0.67
HPS4-201ENST00000336873 CDK13Q14004 1512 aaKnown RBP10.89□□□□□ -0.67
HPS4-201ENST00000336873 NAIPQ13075 1403 aa10.89□□□□□ -0.67
HPS4-201ENST00000336873 CCDC7Q96M83 1385 aa10.89□□□□□ -0.67
HPS4-201ENST00000336873 AKNAQ7Z591 1439 aa10.89□□□□□ -0.67
HPS4-201ENST00000336873 NOP58Q9Y2X3 529 aaKnown RBP10.88□□□□□ -0.67
HPS4-201ENST00000336873 GGT6Q6P531 493 aa10.88□□□□□ -0.67
HPS4-201ENST00000336873 PANK3Q9H999 370 aa10.88□□□□□ -0.67
HPS4-201ENST00000336873 RCAN3Q9UKA8 241 aa10.88□□□□□ -0.67
HPS4-201ENST00000336873 PRG4Q92954 1404 aaPredicted RBP10.87□□□□□ -0.67
HPS4-201ENST00000336873 NUDCQ9Y266 331 aa10.87□□□□□ -0.67
HPS4-201ENST00000336873 DEKP35659 375 aaKnown RBP10.86□□□□□ -0.67
HPS4-201ENST00000336873 RRP7AQ9Y3A4 280 aaKnown RBP10.85□□□□□ -0.67
HPS4-201ENST00000336873 PAK3O75914 559 aaPredicted RBP10.85□□□□□ -0.67
HPS4-201ENST00000336873 STAG3Q9UJ98 1225 aa10.85□□□□□ -0.67
HPS4-201ENST00000336873 STK26Q9P289 416 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 KDM6BO15054 1643 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 EIF5BO60841 1220 aaKnown RBP10.84□□□□□ -0.67
HPS4-201ENST00000336873 NEFMP07197 916 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 SPRYD3Q8NCJ5 442 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 BCL2L13Q9BXK5 485 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 SNAPC4Q5SXM2 1469 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 PRDM2Q13029 1718 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 ANKRD30AQ9BXX3 1397 aa10.84□□□□□ -0.67
HPS4-201ENST00000336873 CLUAP1Q96AJ1 413 aa10.83□□□□□ -0.68
HPS4-201ENST00000336873 HFM1A2PYH4 1435 aa10.83□□□□□ -0.68
HPS4-201ENST00000336873 KIF3BO15066 747 aa10.83□□□□□ -0.68
HPS4-201ENST00000336873 ZNF608Q9ULD9 1512 aaPredicted RBP10.83□□□□□ -0.68
HPS4-201ENST00000336873 TMF1P82094 1093 aa10.82□□□□□ -0.68
HPS4-201ENST00000336873 ZBED9Q6R2W3 1325 aa10.82□□□□□ -0.68
HPS4-201ENST00000336873 PTPRGP23470 1445 aa10.82□□□□□ -0.68
HPS4-201ENST00000336873 FYCO1Q9BQS8 1478 aa10.81□□□□□ -0.68
HPS4-201ENST00000336873 AFAP1Q8N556 730 aa10.81□□□□□ -0.68
HPS4-201ENST00000336873 MAP3K1Q13233 1512 aa10.8□□□□□ -0.68
HPS4-201ENST00000336873 U2SURPO15042 1029 aaKnown RBP10.8□□□□□ -0.68
HPS4-201ENST00000336873 SOX12O15370 315 aa10.8□□□□□ -0.68
HPS4-201ENST00000336873 TRAK1Q9UPV9 953 aa10.8□□□□□ -0.68
HPS4-201ENST00000336873 MLECQ14165 292 aa10.79□□□□□ -0.68
HPS4-201ENST00000336873 CNTLNQ9NXG0 1405 aa10.79□□□□□ -0.68
HPS4-201ENST00000336873 EFCAB5A4FU69 1503 aa10.78□□□□□ -0.68
HPS4-201ENST00000336873 CRBNQ96SW2 442 aa10.78□□□□□ -0.68
HPS4-201ENST00000336873 ANO8Q9HCE9 1232 aaPredicted RBP10.78□□□□□ -0.68
HPS4-201ENST00000336873 KTN1Q86UP2 1357 aaKnown RBP10.78□□□□□ -0.68
HPS4-201ENST00000336873 NLRP13Q86W25 1043 aa10.78□□□□□ -0.68
HPS4-201ENST00000336873 ANKRD50Q9ULJ7 1429 aa10.76□□□□□ -0.69
HPS4-201ENST00000336873 APAF1O14727 1248 aa10.76□□□□□ -0.69
HPS4-201ENST00000336873 ADAMTS8Q9UP79 889 aa10.76□□□□□ -0.69
HPS4-201ENST00000336873 PNISRQ8TF01 805 aaKnown RBP10.76□□□□□ -0.69
HPS4-201ENST00000336873 CUL7Q14999 1698 aa10.76□□□□□ -0.69
HPS4-201ENST00000336873 PLB1Q6P1J6 1458 aa10.75□□□□□ -0.69
HPS4-201ENST00000336873 KIF15Q9NS87 1388 aa10.75□□□□□ -0.69
HPS4-201ENST00000336873 PTPN23Q9H3S7 1636 aa10.75□□□□□ -0.69
HPS4-201ENST00000336873 MAGI3Q5TCQ9 1506 aa10.75□□□□□ -0.69
HPS4-201ENST00000336873 RRP1P56182 461 aaKnown RBP10.75□□□□□ -0.69
HPS4-201ENST00000336873 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.74□□□□□ -0.69
HPS4-201ENST00000336873 MYBBP1AQ9BQG0 1328 aaKnown RBP10.74□□□□□ -0.69
HPS4-201ENST00000336873 TMEM132EQ6IEE7 984 aa10.74□□□□□ -0.69
HPS4-201ENST00000336873 KIAA0586Q9BVV6 1533 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms