RNA–Protein interactions for RNA: ENST00000336873.9

HPS4-201, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HPS4, Length 3,786 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-201ENST00000336873 NISCHQ9Y2I1 1504 aa15.44■□□□□ 0.06
HPS4-201ENST00000336873 DCAF8L2P0C7V8 631 aa14.72□□□□□ -0.05
HPS4-201ENST00000336873 SHROOM4Q9ULL8 1493 aa14.55□□□□□ -0.08
HPS4-201ENST00000336873 SUPT5HO00267 1087 aaKnown RBP14.48□□□□□ -0.09
HPS4-201ENST00000336873 EHMT2Q96KQ7 1210 aa13.96□□□□□ -0.17
HPS4-201ENST00000336873 PCGF6Q9BYE7 350 aa13.66□□□□□ -0.22
HPS4-201ENST00000336873 FAM9AQ8IZU1 332 aaPredicted RBP13.61□□□□□ -0.23
HPS4-201ENST00000336873 LOC105371045A0A1W2PR82 267 aa13.45□□□□□ -0.26
HPS4-201ENST00000336873 TTBK1Q5TCY1 1321 aaPredicted RBP13.43□□□□□ -0.26
HPS4-201ENST00000336873 CHIC1Q5VXU3 224 aa13.35□□□□□ -0.27
HPS4-201ENST00000336873 PPARGC1BQ86YN6 1023 aaKnown RBP13.35□□□□□ -0.27
HPS4-201ENST00000336873 MYO15BQ96JP2 1530 aa13.33□□□□□ -0.28
HPS4-201ENST00000336873 TRIM41Q8WV44 630 aa13.17□□□□□ -0.3
HPS4-201ENST00000336873 RANGAP1P46060 587 aaPredicted RBP13.11□□□□□ -0.31
HPS4-201ENST00000336873 HRCP23327 699 aa13.09□□□□□ -0.31
HPS4-201ENST00000336873 ABCC9O60706 1549 aa12.99□□□□□ -0.33
HPS4-201ENST00000336873 CCDC180Q9P1Z9 1646 aa12.97□□□□□ -0.33
HPS4-201ENST00000336873 ZCCHC6Q5VYS8 1495 aaKnown RBP12.92□□□□□ -0.34
HPS4-201ENST00000336873 TRIM26Q12899 539 aaPredicted RBP12.86□□□□□ -0.35
HPS4-201ENST00000336873 CCER1Q8TC90 406 aaPredicted RBP12.84□□□□□ -0.35
HPS4-201ENST00000336873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.8□□□□□ -0.36
HPS4-201ENST00000336873 UBTFP17480 764 aaKnown RBP12.8□□□□□ -0.36
HPS4-201ENST00000336873 PELP1Q8IZL8 1130 aaKnown RBP12.78□□□□□ -0.36
HPS4-201ENST00000336873 YTHDC1Q96MU7 727 aaKnown RBP12.71□□□□□ -0.37
HPS4-201ENST00000336873 PABPN1Q86U42 306 aaKnown RBP eCLIP12.71□□□□□ -0.38
HPS4-201ENST00000336873 HNRNPUL2Q1KMD3 747 aaKnown RBP12.62□□□□□ -0.39
HPS4-201ENST00000336873 APLP2Q06481 763 aa12.61□□□□□ -0.39
HPS4-201ENST00000336873 DCAF1Q9Y4B6 1507 aa12.57□□□□□ -0.4
HPS4-201ENST00000336873 ZEB1P37275 1124 aaPredicted RBP12.55□□□□□ -0.4
HPS4-201ENST00000336873 SCRIBQ14160 1630 aa12.55□□□□□ -0.4
HPS4-201ENST00000336873 ATP1B4Q9UN42 357 aaPredicted RBP12.55□□□□□ -0.4
HPS4-201ENST00000336873 MYT1Q01538 1121 aa12.53□□□□□ -0.4
HPS4-201ENST00000336873 ITGAEP38570 1179 aa12.53□□□□□ -0.4
HPS4-201ENST00000336873 SCAF1Q9H7N4 1312 aaKnown RBP12.39□□□□□ -0.43
HPS4-201ENST00000336873 DIEXFQ68CQ4 756 aaKnown RBP12.38□□□□□ -0.43
HPS4-201ENST00000336873 RSF1Q96T23 1441 aaPredicted RBP12.38□□□□□ -0.43
HPS4-201ENST00000336873 NACADO15069 1562 aa12.36□□□□□ -0.43
HPS4-201ENST00000336873 CENPBP07199 599 aaPredicted RBP12.33□□□□□ -0.43
HPS4-201ENST00000336873 RB1CC1Q8TDY2 1594 aa12.33□□□□□ -0.44
HPS4-201ENST00000336873 CECR2Q9BXF3 1484 aa12.31□□□□□ -0.44
HPS4-201ENST00000336873 GTF3C3Q9Y5Q9 886 aa12.28□□□□□ -0.44
HPS4-201ENST00000336873 CSRNP3Q8WYN3 585 aa12.25□□□□□ -0.45
HPS4-201ENST00000336873 CNGB1Q14028 1251 aaPredicted RBP12.22□□□□□ -0.45
HPS4-201ENST00000336873 NEUROD1Q13562 356 aa12.21□□□□□ -0.45
HPS4-201ENST00000336873 P3H3Q8IVL6 736 aa12.19□□□□□ -0.46
HPS4-201ENST00000336873 ACIN1Q9UKV3 1341 aaKnown RBP12.11□□□□□ -0.47
HPS4-201ENST00000336873 MROH2BQ7Z745 1585 aa12.09□□□□□ -0.47
HPS4-201ENST00000336873 FAM50AQ14320 339 aaKnown RBP12.08□□□□□ -0.47
HPS4-201ENST00000336873 ARID3CA6NKF2 412 aa12.08□□□□□ -0.48
HPS4-201ENST00000336873 ZNF316A6NFI3 1004 aaPredicted RBP12.08□□□□□ -0.48
HPS4-201ENST00000336873 EIF4G1Q04637 1599 aaKnown RBP12.07□□□□□ -0.48
HPS4-201ENST00000336873 SOGA1O94964 1423 aa12.07□□□□□ -0.48
HPS4-201ENST00000336873 BCANQ96GW7 911 aa12.06□□□□□ -0.48
HPS4-201ENST00000336873 MIER1Q8N108 512 aa12.05□□□□□ -0.48
HPS4-201ENST00000336873 HIRIP3Q9BW71 556 aaPredicted RBP12.04□□□□□ -0.48
HPS4-201ENST00000336873 ABCC8Q09428 1581 aa12.04□□□□□ -0.48
HPS4-201ENST00000336873 CEP162Q5TB80 1403 aa11.99□□□□□ -0.49
HPS4-201ENST00000336873 CCDC88BA6NC98 1476 aa11.99□□□□□ -0.49
HPS4-201ENST00000336873 POLR3GLQ9BT43 218 aa11.98□□□□□ -0.49
HPS4-201ENST00000336873 BAZ1AQ9NRL2 1556 aaPredicted RBP11.98□□□□□ -0.49
HPS4-201ENST00000336873 WIZO95785 1651 aa11.97□□□□□ -0.49
HPS4-201ENST00000336873 RUSC2Q8N2Y8 1516 aa11.94□□□□□ -0.5
HPS4-201ENST00000336873 CLIP1P30622 1438 aa11.87□□□□□ -0.51
HPS4-201ENST00000336873 DDX10Q13206 875 aaKnown RBP11.87□□□□□ -0.51
HPS4-201ENST00000336873 BAZ1BQ9UIG0 1483 aaKnown RBP11.85□□□□□ -0.51
HPS4-201ENST00000336873 SENP3-EIF4A1A0A087X0R7 540 aa11.85□□□□□ -0.51
HPS4-201ENST00000336873 WRNQ14191 1432 aaPredicted RBP eCLIP11.84□□□□□ -0.519e-6■■■■■ 50.1
HPS4-201ENST00000336873 KANK4Q5T7N3 995 aaPredicted RBP11.84□□□□□ -0.51
HPS4-201ENST00000336873 TRIM52Q96A61 297 aa11.82□□□□□ -0.52
HPS4-201ENST00000336873 NEFLP07196 543 aa11.8□□□□□ -0.52
HPS4-201ENST00000336873 CHIC2Q9UKJ5 165 aa11.79□□□□□ -0.52
HPS4-201ENST00000336873 SIN3AQ96ST3 1273 aa11.79□□□□□ -0.52
HPS4-201ENST00000336873 TNIKQ9UKE5 1360 aa11.79□□□□□ -0.52
HPS4-201ENST00000336873 ZNF326Q5BKZ1 582 aaKnown RBP11.78□□□□□ -0.52
HPS4-201ENST00000336873 FBLN2P98095 1184 aa11.75□□□□□ -0.53
HPS4-201ENST00000336873 SMARCA4P51532 1647 aa11.74□□□□□ -0.53
HPS4-201ENST00000336873 GOLGA3Q08378 1498 aa11.73□□□□□ -0.53
HPS4-201ENST00000336873 KCNH8Q96L42 1107 aa11.72□□□□□ -0.53
HPS4-201ENST00000336873 IRX6P78412 446 aaPredicted RBP11.72□□□□□ -0.53
HPS4-201ENST00000336873 TOP2AP11388 1531 aaKnown RBP11.71□□□□□ -0.54
HPS4-201ENST00000336873 FKBP8Q14318 412 aa11.7□□□□□ -0.54
HPS4-201ENST00000336873 ATAD2BQ9ULI0 1458 aa11.7□□□□□ -0.54
HPS4-201ENST00000336873 SMARCA2P51531 1590 aa11.68□□□□□ -0.54
HPS4-201ENST00000336873 ZNF777Q9ULD5 760 aaPredicted RBP11.66□□□□□ -0.54
HPS4-201ENST00000336873 RRP7BPQ9NSQ0 103 aa11.65□□□□□ -0.54
HPS4-201ENST00000336873 RAPGEF2Q9Y4G8 1499 aa11.65□□□□□ -0.54
HPS4-201ENST00000336873 ANP32CO43423 234 aa11.65□□□□□ -0.55
HPS4-201ENST00000336873 ERICH6Q7L0X2 663 aa11.64□□□□□ -0.55
HPS4-201ENST00000336873 UNC13AQ9UPW8 1703 aa11.63□□□□□ -0.55
HPS4-201ENST00000336873 CEP164Q9UPV0 1460 aa11.61□□□□□ -0.55
HPS4-201ENST00000336873 FAM9BQ8IZU0 186 aa11.59□□□□□ -0.55
HPS4-201ENST00000336873 SALL2Q9Y467 1007 aaPredicted RBP11.59□□□□□ -0.55
HPS4-201ENST00000336873 HNRNPUQ00839 825 aaKnown RBP eCLIP11.58□□□□□ -0.55
HPS4-201ENST00000336873 BICRAQ9NZM4 1560 aa11.58□□□□□ -0.56
HPS4-201ENST00000336873 EEA1Q15075 1411 aa11.58□□□□□ -0.56
HPS4-201ENST00000336873 MYT1LQ9UL68 1186 aa11.56□□□□□ -0.56
HPS4-201ENST00000336873 VPS8Q8N3P4 1428 aa11.56□□□□□ -0.56
HPS4-201ENST00000336873 FOXD1Q16676 465 aa11.56□□□□□ -0.56
HPS4-201ENST00000336873 TONSLQ96HA7 1378 aa11.54□□□□□ -0.56
HPS4-201ENST00000336873 SUPT16HQ9Y5B9 1047 aaKnown RBP11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms