RNA–Protein interactions for RNA: YLR396C

VPS33, Transcript of ATP-binding protein that is a subunit of the HOPS and CORVET complexes, yeast

Gene VPS33, Length 2,076 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS33	YLR396C	SLC1	P33333	303 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	TEF4	P36008	412 aa	Known RBP	3.57	□□□□□ -1.84
VPS33	YLR396C	RRN3	P36070	627 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	FTH1	P38310	465 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	IMD2	P38697	523 aa	Known RBP	3.57	□□□□□ -1.84
VPS33	YLR396C	AXL2	P38928	823 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	UME6	P39001	836 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	YIL161W	P40449	235 aa	Known RBP	3.57	□□□□□ -1.84
VPS33	YLR396C	UBX6	P47049	396 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	BPL1	P48445	690 aa	Predicted RBP	3.57	□□□□□ -1.84
VPS33	YLR396C	IMD3	P50095	523 aa	Known RBP	3.57	□□□□□ -1.84
VPS33	YLR396C	YGL082W	P53155	381 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	ATP23	P53722	227 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	SVL3	Q03088	825 aa	Known RBP	3.57	□□□□□ -1.84
VPS33	YLR396C	YDR109C	Q04585	715 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	YKL068W-A	Q3E826	78 aa		3.57	□□□□□ -1.84
VPS33	YLR396C	CHC1	P22137	1653 aa	Known RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	CET1	O13297	549 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	YER010C	P40011	234 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	PHM8	P40025	321 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	KAP123	P40069	1113 aa	Known RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	IST3	P40565	148 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	ASE1	P50275	885 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	ARP5	P53946	755 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	THI7	Q05998	598 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	NKP2	Q06162	153 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	TMA16	Q08687	178 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	LEA1	Q08963	238 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	YRF1-4	O13559	1382 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	YML133C	Q03099	1374 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	YLL067C	Q07888	1374 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	YLL066C	Q99208	1374 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	RAD50	P12753	1312 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	NTE1	Q04958	1679 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	PGK1	P00560	416 aa	Known RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	ILV2	P07342	687 aa	Known RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	3.56	□□□□□ -1.84	not detected
VPS33	YLR396C	APN1	P22936	367 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	SSH4	P32343	579 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	RPT3	P33298	428 aa	Known RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	HYR1	P40581	163 aa	Known RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	IRC3	Q06683	689 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	NEW1	Q08972	1196 aa	Known RBP	3.56	□□□□□ -1.84
VPS33	YLR396C	SEC39	Q12745	709 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	SIR4	P11978	1358 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	AUS1	Q08409	1394 aa		3.56	□□□□□ -1.84
VPS33	YLR396C	NUP1	P20676	1076 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	PRD1	P25375	712 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	CBF2	P32504	956 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	CIN1	P40987	1014 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	GYL1	Q04322	720 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	RTT109	Q07794	436 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	VCX1	Q99385	411 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	LYS2	P07702	1392 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	RER1	P25560	188 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	CNS1	P33313	385 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	3.55	□□□□□ -1.84	not detected
VPS33	YLR396C	PSD1	P39006	500 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	ERV46	P39727	415 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	RIC1	P40395	1056 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	NMD5	P46970	1048 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	ADE16	P54113	591 aa	Known RBP	3.55	□□□□□ -1.84
VPS33	YLR396C	YPL071C	Q02864	156 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	RIM13	Q03792	727 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	SEG1	Q04279	960 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	TPO3	Q06451	622 aa		3.55	□□□□□ -1.84
VPS33	YLR396C	RAD3	P06839	778 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	YPR003C	P53394	754 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	YNR061C	P53747	219 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	YNL050C	P53952	270 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	REG1	Q00816	1014 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	SNU56	Q03782	492 aa	Known RBP	3.54	□□□□□ -1.84
VPS33	YLR396C	OPY2	Q06810	360 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	YOR389W	Q08912	624 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	YPL225W	Q08971	146 aa	Known RBP	3.54	□□□□□ -1.84
VPS33	YLR396C	VMR1	P38735	1592 aa		3.54	□□□□□ -1.84
VPS33	YLR396C	ERG8	P24521	451 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	HSP104	P31539	908 aa	Known RBP	3.53	□□□□□ -1.84
VPS33	YLR396C	PUP2	P32379	260 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	YAP3	P38749	330 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	VID27	P40157	782 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	CDC1	P40986	491 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	SNO4	Q04902	237 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	ORM2	Q06144	216 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	SWA2	Q06677	668 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	HSP33	Q08914	237 aa	Known RBP	3.53	□□□□□ -1.84
VPS33	YLR396C	HSP32	Q08992	237 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	DNF3	Q12674	1656 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	PET111	P08468	800 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	RPB2	P08518	1224 aa	Known RBP	3.53	□□□□□ -1.84
VPS33	YLR396C	RNR2	P09938	399 aa	Known RBP	3.53	□□□□□ -1.84
VPS33	YLR396C	MCM10	P32354	571 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	SRB5	P32585	307 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	RFC1	P38630	861 aa	Known RBP	3.53	□□□□□ -1.84
VPS33	YLR396C	PFK26	P40433	827 aa	Known RBP	3.53	□□□□□ -1.84
VPS33	YLR396C	MEP3	P53390	489 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	DCP2	P53550	970 aa	Known RBP	3.53	□□□□□ -1.84
VPS33	YLR396C	COG4	Q06096	861 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	THI3	Q07471	609 aa		3.53	□□□□□ -1.84
VPS33	YLR396C	ERG27	Q12452	347 aa	Known RBP	3.53	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 11.5 ms