Protein–RNA interactions for Protein: P00560

PGK1, Phosphoglycerate kinase, yeastyeast

Known RBP Predictions only

Length 416 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PGK1P00560 YML009W-BYML009W-B 477 nt22.91■■□□□ 1.26
PGK1P00560 NSR1YGR159C 1245 nt22.56■■□□□ 1.2
PGK1P00560 NOP1YDL014W 984 nt22.31■■□□□ 1.16
PGK1P00560 YKL036CYKL036C 393 nt20.76■□□□□ 0.91
PGK1P00560 MDJ1YFL016C 1536 nt19.91■□□□□ 0.78
PGK1P00560 Q0297Q0297 156 nt19.57■□□□□ 0.72
PGK1P00560 SRX1YKL086W 384 nt19.49■□□□□ 0.71
PGK1P00560 YJL027CYJL027C 417 nt19.43■□□□□ 0.7
PGK1P00560 SCS3YGL126W 1143 nt18.98■□□□□ 0.63
PGK1P00560 YCR051WYCR051W 669 nt18.54■□□□□ 0.56
PGK1P00560 YOL085CYOL085C 342 nt17.96■□□□□ 0.47
PGK1P00560 PKP1YIL042C 1185 nt17.7■□□□□ 0.42
PGK1P00560 DBP2YNL112W 1641 nt17.65■□□□□ 0.42
PGK1P00560 RPP1BYDL130W 321 nt17.57■□□□□ 0.4
PGK1P00560 TRN1tP(UGG)A 72 nt17.53■□□□□ 0.4
PGK1P00560 SUF9tP(UGG)F 72 nt17.53■□□□□ 0.4
PGK1P00560 SUF8tP(UGG)H 72 nt17.53■□□□□ 0.4
PGK1P00560 tP(UGG)LtP(UGG)L 72 nt17.53■□□□□ 0.4
PGK1P00560 SUF7tP(UGG)M 72 nt17.53■□□□□ 0.4
PGK1P00560 tP(UGG)N1tP(UGG)N1 72 nt17.53■□□□□ 0.4
PGK1P00560 tP(UGG)N2tP(UGG)N2 72 nt17.53■□□□□ 0.4
PGK1P00560 tP(UGG)O1tP(UGG)O1 72 nt17.53■□□□□ 0.4
PGK1P00560 SUF11tP(UGG)O2 72 nt17.53■□□□□ 0.4
PGK1P00560 CCC1YLR220W 969 nt17.38■□□□□ 0.37
PGK1P00560 ATS1YAL020C 1002 nt17.01■□□□□ 0.31
PGK1P00560 SCJ1YMR214W 1134 nt17■□□□□ 0.31
PGK1P00560 YBR190WYBR190W 312 nt16.9■□□□□ 0.3
PGK1P00560 PET122YER153C 765 nt16.78■□□□□ 0.28
PGK1P00560 RVS167YDR388W 1449 nt16.68■□□□□ 0.26
PGK1P00560 SCR1SCR1 522 nt16.66■□□□□ 0.26
PGK1P00560 tP(UGG)O3tP(UGG)O3 72 nt16.64■□□□□ 0.25
PGK1P00560 RTC3YHR087W 336 nt16.57■□□□□ 0.24
PGK1P00560 RRN5YLR141W 1092 nt16.31■□□□□ 0.2
PGK1P00560 SHR5YOL110W 714 nt16.11■□□□□ 0.17
PGK1P00560 YDJ1YNL064C 1230 nt16.08■□□□□ 0.16
PGK1P00560 RSB1YOR049C 1065 nt16.05■□□□□ 0.16
PGK1P00560 YER088W-BYER088W-B 147 nt15.98■□□□□ 0.15
PGK1P00560 GAR1YHR089C 618 nt15.73■□□□□ 0.11
PGK1P00560 PST2YDR032C 597 nt15.71■□□□□ 0.11
PGK1P00560 DEP1YAL013W 1218 nt15.63■□□□□ 0.09
PGK1P00560 URN1YPR152C 1398 nt15.57■□□□□ 0.08
PGK1P00560 RPN10YHR200W 807 nt15.39■□□□□ 0.05
PGK1P00560 YNL208WYNL208W 600 nt15.38■□□□□ 0.05
PGK1P00560 OPI9YLR338W 858 nt15.29■□□□□ 0.04
PGK1P00560 YKL097CYKL097C 411 nt15.22■□□□□ 0.03
PGK1P00560 PUT4YOR348C 1884 nt15.19■□□□□ 0.02
PGK1P00560 TIR1YER011W 765 nt15.18■□□□□ 0.02
PGK1P00560 SAH1YER043C 1350 nt15.15■□□□□ 0.02
PGK1P00560 SHU1YHL006C 453 nt15.05■□□□□ -0
PGK1P00560 ARE1YCR048W 1833 nt14.98□□□□□ -0.01
PGK1P00560 SSA1YAL005C 1929 nt14.95□□□□□ -0.02
PGK1P00560 PUN1YLR414C 792 nt14.87□□□□□ -0.03
PGK1P00560 SSA3YBL075C 1950 nt14.86□□□□□ -0.03
PGK1P00560 YJR018WYJR018W 363 nt14.86□□□□□ -0.03
PGK1P00560 YHR049C-AYHR049C-A 297 nt14.83□□□□□ -0.04
PGK1P00560 YAL037C-BYAL037C-B 975 nt14.78□□□□□ -0.04
PGK1P00560 POA1YBR022W 534 nt14.75□□□□□ -0.05
PGK1P00560 SRB2YHR041C 633 nt14.73□□□□□ -0.05
PGK1P00560 PTC2YER089C 1395 nt14.65□□□□□ -0.06
PGK1P00560 YJR120WYJR120W 351 nt14.65□□□□□ -0.06
PGK1P00560 RPP2BYDR382W 333 nt14.62□□□□□ -0.07
PGK1P00560 YOR139CYOR139C 393 nt14.56□□□□□ -0.08
PGK1P00560 WWM1YFL010C 636 nt14.55□□□□□ -0.08
PGK1P00560 BUD23YCR047C 828 nt14.52□□□□□ -0.09
PGK1P00560 YGR021WYGR021W 873 nt14.52□□□□□ -0.09
PGK1P00560 HOM6YJR139C 1080 nt14.46□□□□□ -0.09
PGK1P00560 MNP1YGL068W 585 nt14.45□□□□□ -0.1
PGK1P00560 NPL3YDR432W 1245 nt14.43□□□□□ -0.1
PGK1P00560 NAB2YGL122C 1578 nt14.42□□□□□ -0.1
PGK1P00560 BSC6YOL137W 1494 nt14.4□□□□□ -0.1
PGK1P00560 BDH2YAL061W 1254 nt14.34□□□□□ -0.11
PGK1P00560 YFL021C-AYFL021C-A 855 nt14.3□□□□□ -0.12
PGK1P00560 INM2YDR287W 879 nt14.29□□□□□ -0.12
PGK1P00560 FPR4YLR449W 1179 nt14.28□□□□□ -0.12
PGK1P00560 DAL1YIR027C 1383 nt14.27□□□□□ -0.12
PGK1P00560 RKM5YLR137W 1104 nt14.26□□□□□ -0.13
PGK1P00560 YOL037CYOL037C 354 nt14.26□□□□□ -0.13
PGK1P00560 FIS1YIL065C 468 nt14.24□□□□□ -0.13
PGK1P00560 YBL100CYBL100C 315 nt14.21□□□□□ -0.13
PGK1P00560 LSM3YLR438C-A 270 nt14.17□□□□□ -0.14
PGK1P00560 PHO4YFR034C 939 nt14.15□□□□□ -0.14
PGK1P00560 TRM9YML014W 840 nt14.05□□□□□ -0.16
PGK1P00560 FUN26YAL022C 1554 nt14.04□□□□□ -0.16
PGK1P00560 tM(CAU)CtM(CAU)C 72 nt13.97□□□□□ -0.17
PGK1P00560 IMT4tM(CAU)E 72 nt13.97□□□□□ -0.17
PGK1P00560 IMT3tM(CAU)J3 72 nt13.97□□□□□ -0.17
PGK1P00560 IMT1tM(CAU)O1 72 nt13.97□□□□□ -0.17
PGK1P00560 IMT2tM(CAU)P 72 nt13.97□□□□□ -0.17
PGK1P00560 YLR281CYLR281C 468 nt13.89□□□□□ -0.19
PGK1P00560 CCT6YDR188W 1641 nt13.88□□□□□ -0.19
PGK1P00560 WHI5YOR083W 888 nt13.85□□□□□ -0.19
PGK1P00560 PUS2YGL063W 1113 nt13.84□□□□□ -0.19
PGK1P00560 ALF1YNL148C 765 nt13.83□□□□□ -0.2
PGK1P00560 YPS1YLR120C 1710 nt13.78□□□□□ -0.2
PGK1P00560 SUF2tP(AGG)C 72 nt13.77□□□□□ -0.21
PGK1P00560 SUF10tP(AGG)N 72 nt13.77□□□□□ -0.21
PGK1P00560 YDR095CYDR095C 411 nt13.74□□□□□ -0.21
PGK1P00560 YLR154C-GYLR154C-G 150 nt13.69□□□□□ -0.22
PGK1P00560 YHR165W-AYHR165W-A 312 nt13.66□□□□□ -0.22
PGK1P00560 DSK2YMR276W 1122 nt13.58□□□□□ -0.24
Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms