RNA–Protein interactions for RNA: ENSMUST00000003857.6

Shkbp1-201, Transcript of SH3KBP1-binding protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shkbp1, Length 2,358 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1-201ENSMUST00000003857 Reg3bP35230 175 aa12.42□□□□□ -0.42
Shkbp1-201ENSMUST00000003857 Phxr5P08399 672 aa12.41□□□□□ -0.42
Shkbp1-201ENSMUST00000003857 Pde6gP09174 87 aa12.41□□□□□ -0.42
Shkbp1-201ENSMUST00000003857 BC048502Q80Y74 154 aa12.41□□□□□ -0.42
Shkbp1-201ENSMUST00000003857 Fam229bQ8CF36 80 aa12.41□□□□□ -0.42
Shkbp1-201ENSMUST00000003857 Cd164Q9R0L9 197 aa12.41□□□□□ -0.42
Shkbp1-201ENSMUST00000003857 Sprr4Q8CGN8 76 aa12.4□□□□□ -0.42
Shkbp1-201ENSMUST00000003857 Trav14-1A0A0G2JF94 121 aa12.4□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Tmem258P61166 79 aa12.39□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Camk2n2Q78WH7 79 aa12.38□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Cdk2ap2Q9CPY4 127 aa12.37□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Notch2O35516 2470 aa12.37□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Igkv1-110A0A0B4J1I0 119 aa12.37□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Defa4P28311 92 aa12.37□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Ighv2-2A0A075B5P8 116 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Gm17689B3GLJ4 109 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 P01821 116 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 GhrhP16043 103 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Defb37Q7TMD2 62 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Gm5617Q91VN2 117 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Itpr2Q9Z329 2701 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Kmt2aP55200 3966 aa12.36□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Gm7276Q3TYW4 209 aa12.35□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 ApcQ61315 2845 aa12.35□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Igkv8-28A0A0G2JE47 121 aa12.34□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Rps28P62858 69 aaKnown RBP12.34□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Defa23Q5G866 93 aa12.34□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 A830005F24RikQ8BRT5 167 aa12.34□□□□□ -0.43
Shkbp1-201ENSMUST00000003857 Gm19935A0A1B0GSF9 52 aa12.33□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 AplnQ9R0R4 77 aa12.33□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Ndufc1Q9CQY9 76 aa12.32□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 AtrQ9JKK8 2635 aa12.32□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Pou2af1Q64693 256 aa12.3□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Vpreb2P13373 142 aa12.3□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Smim29Q8R043 75 aa12.29□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Fam19a3Q7TPG6 132 aa12.29□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Gm7138L7N2C3 230 aa12.28□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Gm3238W4VSP7 230 aa12.28□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 B230307C23RikQ8BLB2 64 aa12.27□□□□□ -0.44
Shkbp1-201ENSMUST00000003857 Dnah3Q8BW94 4083 aa12.27□□□□□ -0.45
Shkbp1-201ENSMUST00000003857 Igkv1-122A0A140T8M9 119 aa12.26□□□□□ -0.45
Shkbp1-201ENSMUST00000003857 Gm16181B0V2H2 73 aa12.23□□□□□ -0.45
Shkbp1-201ENSMUST00000003857 A330070K13RikQ8CA53 115 aa12.2□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Samd13D3YUG0 102 aa12.2□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 BikO70337 150 aa12.2□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Sprr2jO70561 109 aa12.19□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Sfta2E9PXB6 77 aa12.17□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 PtprqP0C5E4 2300 aa12.17□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 A0A286YE02 88 aa12.16□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Gm16485Q8C4B7 115 aa12.16□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 P84750 121 aa12.16□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Sprr1aQ62266 144 aa12.16□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Dmac1Q9CQ00 111 aa12.16□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Gm11627A6PWP4 55 aa12.15□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Stab1Q8R4Y4 2571 aa12.15□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Notch1Q01705 2531 aa12.15□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Igkv3-2A0A075B5P0 119 aa12.15□□□□□ -0.46
Shkbp1-201ENSMUST00000003857 Cox6a2P43023 97 aa12.14□□□□□ -0.47
Shkbp1-201ENSMUST00000003857 6430550D23RikE9Q1X6 194 aa12.13□□□□□ -0.47
Shkbp1-201ENSMUST00000003857 Srrm2Q8BTI8 2703 aaKnown RBP12.13□□□□□ -0.47
Shkbp1-201ENSMUST00000003857 Wfdc6bF6ULY1 148 aa12.11□□□□□ -0.47
Shkbp1-201ENSMUST00000003857 Fam168bQ80XQ8 194 aa12.11□□□□□ -0.47
Shkbp1-201ENSMUST00000003857 P06320 134 aa12.1□□□□□ -0.47
Shkbp1-201ENSMUST00000003857 A930002H24RikQ8C8Y3 163 aa12.1□□□□□ -0.47
Shkbp1-201ENSMUST00000003857 Gm11011D3Z3L9 86 aa12.08□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 SnurfQ9WU12 71 aa12.08□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Prol1E9PYQ4 312 aa12.07□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Hivep1Q03172 2688 aa12.06□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Gm37389A0A0A6YW05 95 aa12.06□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Vpreb1P13372 142 aa12.06□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Fam19a5Q91WE9 132 aa12.06□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Col6a5A6H584 2640 aa12.05□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Gm36176A0A1W2P8D5 158 aa12.05□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Brk1Q91VR8 75 aa12.05□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Obox2E9PXV9 151 aa12.05□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 C130032M10RikQ8C888 123 aa12.05□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 FlnbQ80X90 2602 aaKnown RBP12.04□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Prr15lQ8JZM2 100 aa12.04□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 PscaP57096 123 aa12.03□□□□□ -0.48
Shkbp1-201ENSMUST00000003857 Q8BT88 171 aa12.02□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Fn1P11276 2477 aaKnown RBP12.02□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 H2al1aQ5M8Q2 105 aa12.01□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Serp1Q9Z1W5 66 aa12.01□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Dnah1E9Q8T7 4250 aa12.01□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Vpreb3D3Z6J4 130 aa12.01□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Mrpl34Q99N91 92 aa12.01□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Dnah17Q69Z23 4481 aa12□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Igkv3-12A0A140T8P0 119 aa12□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Sslp1Q3UN54 99 aa11.99□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Gm10401E9Q3K6 71 aa11.99□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Igkv3-4A0A140T8Q4 119 aa11.98□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Gm7137J3QMW1 236 aa11.98□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Gm37013Q8K491 104 aa11.98□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Smlr1J3QMJ4 66 aa11.97□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Gm44790A0A0N4SV91 103 aa11.97□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Pet100P0DJE0 76 aa11.97□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 UqcrqQ9CQ69 82 aa11.97□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Dnah7bL7N1Y0 4068 aa11.97□□□□□ -0.49
Shkbp1-201ENSMUST00000003857 Dnah10D3YYQ8 4591 aa11.96□□□□□ -0.5
Shkbp1-201ENSMUST00000003857 Dnah14A0A140LIJ4 4489 aa11.96□□□□□ -0.5
Retrieved 100 of 22,080 RNA–protein pairs in 52.6 ms