Protein–RNA interactions for Protein: A0A140T8Q4

Igkv3-4, Immunoglobulin kappa variable 3-4 (Fragment), mousemouse

Predictions only

Length 119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Igkv3-4A0A140T8Q4 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Igkv3-4A0A140T8Q4 Gm25239-201ENSMUST00000174915 86 ntBASIC20.77■□□□□ 0.92
Igkv3-4A0A140T8Q4 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Igkv3-4A0A140T8Q4 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Igkv3-4A0A140T8Q4 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Igkv3-4A0A140T8Q4 Psd-208ENSMUST00000224556 2034 ntBASIC19.75■□□□□ 0.75
Igkv3-4A0A140T8Q4 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Igkv3-4A0A140T8Q4 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Igkv3-4A0A140T8Q4 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Igkv3-4A0A140T8Q4 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Igkv3-4A0A140T8Q4 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Igkv3-4A0A140T8Q4 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Igkv3-4A0A140T8Q4 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Igkv3-4A0A140T8Q4 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Igkv3-4A0A140T8Q4 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Igkv3-4A0A140T8Q4 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Igkv3-4A0A140T8Q4 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Igkv3-4A0A140T8Q4 Gm15042-201ENSMUST00000120212 883 ntBASIC18.65■□□□□ 0.58
Igkv3-4A0A140T8Q4 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Igkv3-4A0A140T8Q4 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Igkv3-4A0A140T8Q4 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Igkv3-4A0A140T8Q4 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Igkv3-4A0A140T8Q4 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Igkv3-4A0A140T8Q4 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Igkv3-4A0A140T8Q4 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Igkv3-4A0A140T8Q4 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Igkv3-4A0A140T8Q4 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC18.26■□□□□ 0.51
Igkv3-4A0A140T8Q4 Gm15045-201ENSMUST00000117359 883 ntBASIC18.21■□□□□ 0.51
Igkv3-4A0A140T8Q4 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Igkv3-4A0A140T8Q4 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Igkv3-4A0A140T8Q4 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Igkv3-4A0A140T8Q4 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Igkv3-4A0A140T8Q4 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Igkv3-4A0A140T8Q4 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Igkv3-4A0A140T8Q4 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Igkv3-4A0A140T8Q4 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC17.92■□□□□ 0.46
Igkv3-4A0A140T8Q4 Gm42596-201ENSMUST00000196305 1958 ntBASIC17.84■□□□□ 0.45
Igkv3-4A0A140T8Q4 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Igkv3-4A0A140T8Q4 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Igkv3-4A0A140T8Q4 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Igkv3-4A0A140T8Q4 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC17.79■□□□□ 0.44
Igkv3-4A0A140T8Q4 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Igkv3-4A0A140T8Q4 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Igkv3-4A0A140T8Q4 Gm24109-201ENSMUST00000175489 103 ntBASIC17.74■□□□□ 0.43
Igkv3-4A0A140T8Q4 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Igkv3-4A0A140T8Q4 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Igkv3-4A0A140T8Q4 Gm10524-201ENSMUST00000181931 1893 ntBASIC17.71■□□□□ 0.43
Igkv3-4A0A140T8Q4 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Igkv3-4A0A140T8Q4 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Igkv3-4A0A140T8Q4 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Igkv3-4A0A140T8Q4 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC17.67■□□□□ 0.42
Igkv3-4A0A140T8Q4 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Igkv3-4A0A140T8Q4 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Igkv3-4A0A140T8Q4 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Igkv3-4A0A140T8Q4 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Igkv3-4A0A140T8Q4 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC17.61■□□□□ 0.41
Igkv3-4A0A140T8Q4 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Igkv3-4A0A140T8Q4 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC17.57■□□□□ 0.4
Igkv3-4A0A140T8Q4 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Igkv3-4A0A140T8Q4 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Igkv3-4A0A140T8Q4 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Igkv3-4A0A140T8Q4 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Igkv3-4A0A140T8Q4 Gm23366-201ENSMUST00000175022 89 ntBASIC17.48■□□□□ 0.39
Igkv3-4A0A140T8Q4 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Igkv3-4A0A140T8Q4 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Igkv3-4A0A140T8Q4 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC17.4■□□□□ 0.38
Igkv3-4A0A140T8Q4 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Igkv3-4A0A140T8Q4 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Igkv3-4A0A140T8Q4 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Igkv3-4A0A140T8Q4 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Igkv3-4A0A140T8Q4 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Igkv3-4A0A140T8Q4 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Igkv3-4A0A140T8Q4 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Igkv3-4A0A140T8Q4 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Igkv3-4A0A140T8Q4 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Igkv3-4A0A140T8Q4 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Igkv3-4A0A140T8Q4 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Igkv3-4A0A140T8Q4 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Igkv3-4A0A140T8Q4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Igkv3-4A0A140T8Q4 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Igkv3-4A0A140T8Q4 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Igkv3-4A0A140T8Q4 AC153911.1-202ENSMUST00000218534 1034 ntBASIC17.15■□□□□ 0.34
Igkv3-4A0A140T8Q4 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Igkv3-4A0A140T8Q4 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
Igkv3-4A0A140T8Q4 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Igkv3-4A0A140T8Q4 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Igkv3-4A0A140T8Q4 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Igkv3-4A0A140T8Q4 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Igkv3-4A0A140T8Q4 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Igkv3-4A0A140T8Q4 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Igkv3-4A0A140T8Q4 CT025624.2-201ENSMUST00000223609 1909 ntBASIC17.04■□□□□ 0.32
Igkv3-4A0A140T8Q4 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Igkv3-4A0A140T8Q4 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Igkv3-4A0A140T8Q4 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Igkv3-4A0A140T8Q4 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
Igkv3-4A0A140T8Q4 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Igkv3-4A0A140T8Q4 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Igkv3-4A0A140T8Q4 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Igkv3-4A0A140T8Q4 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Igkv3-4A0A140T8Q4 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms