RNA–Protein interactions for RNA: ENST00000263857.10

POLR1A-201, Transcript of RNA polymerase I subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene POLR1A, Length 12,749 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1A-201ENST00000263857 CASC10Q5T4H9 136 aa4.07□□□□□ -1.76
POLR1A-201ENST00000263857 OXTP01178 125 aa4.06□□□□□ -1.76
POLR1A-201ENST00000263857 Q8NDZ9 215 aa4.06□□□□□ -1.76
POLR1A-201ENST00000263857 PP632Q6XCG6 107 aa4.06□□□□□ -1.76
POLR1A-201ENST00000263857 NDUFAF8A1L188 74 aa4.05□□□□□ -1.76
POLR1A-201ENST00000263857 UTRNP46939 3433 aa4.02□□□□□ -1.77
POLR1A-201ENST00000263857 TNP1P09430 55 aa4.01□□□□□ -1.77
POLR1A-201ENST00000263857 RPS29P62273 56 aaKnown RBP4.01□□□□□ -1.77
POLR1A-201ENST00000263857 A6NN06 94 aa4□□□□□ -1.77
POLR1A-201ENST00000263857 CYSTM1Q9H1C7 97 aa4□□□□□ -1.77
POLR1A-201ENST00000263857 CFAP47Q6ZTR5 3102 aa4□□□□□ -1.77
POLR1A-201ENST00000263857 Q5VSD8 79 aa3.99□□□□□ -1.77
POLR1A-201ENST00000263857 KRTAP26-1Q6PEX3 210 aa3.99□□□□□ -1.77
POLR1A-201ENST00000263857 MEGF8Q7Z7M0 2845 aa3.97□□□□□ -1.77
POLR1A-201ENST00000263857 A8MUU9 505 aa3.96□□□□□ -1.78
POLR1A-201ENST00000263857 C10orf95Q9H7T3 257 aa3.95□□□□□ -1.78
POLR1A-201ENST00000263857 COL6A3P12111 3177 aa3.94□□□□□ -1.78
POLR1A-201ENST00000263857 FBN3Q75N90 2809 aa3.94□□□□□ -1.78
POLR1A-201ENST00000263857 KRTAP29-1A8MX34 341 aaPredicted RBP3.92□□□□□ -1.78
POLR1A-201ENST00000263857 XIRP2A4UGR9 3374 aa3.91□□□□□ -1.78
POLR1A-201ENST00000263857 KRTAP10-3P60369 221 aa3.91□□□□□ -1.78
POLR1A-201ENST00000263857 OTOGQ6ZRI0 2925 aa3.88□□□□□ -1.79
POLR1A-201ENST00000263857 LCE6AA0A183 80 aa3.88□□□□□ -1.79
POLR1A-201ENST00000263857 NOTCH2NLQ7Z3S9 236 aa3.87□□□□□ -1.79
POLR1A-201ENST00000263857 KRTAP11-1Q8IUC1 163 aa3.86□□□□□ -1.79
POLR1A-201ENST00000263857 P0C880 135 aa3.84□□□□□ -1.8
POLR1A-201ENST00000263857 KRTAP4-16G5E9R7 235 aaPredicted RBP3.83□□□□□ -1.8
POLR1A-201ENST00000263857 A8MU10 97 aa3.83□□□□□ -1.8
POLR1A-201ENST00000263857 KRTAP10-1P60331 282 aa3.83□□□□□ -1.8
POLR1A-201ENST00000263857 KRTAP1-1Q07627 177 aa3.82□□□□□ -1.8
POLR1A-201ENST00000263857 EYSQ5T1H1 3165 aa3.81□□□□□ -1.8
POLR1A-201ENST00000263857 KRTAP1-3Q8IUG1 177 aa3.81□□□□□ -1.8
POLR1A-201ENST00000263857 PRO2289Q9P1D8 64 aa3.78□□□□□ -1.8
POLR1A-201ENST00000263857 SPEGQ15772 3267 aa3.78□□□□□ -1.8
POLR1A-201ENST00000263857 LAMA3Q16787 3333 aa3.78□□□□□ -1.8
POLR1A-201ENST00000263857 KRTAP1-5Q9BYS1 174 aa3.77□□□□□ -1.81
POLR1A-201ENST00000263857 CELSR3Q9NYQ7 3312 aa3.76□□□□□ -1.81
POLR1A-201ENST00000263857 Q6ZRN7 208 aaPredicted RBP3.75□□□□□ -1.81
POLR1A-201ENST00000263857 VCANP13611 3396 aa3.73□□□□□ -1.81
POLR1A-201ENST00000263857 KRTAP10-2P60368 255 aa3.73□□□□□ -1.81
POLR1A-201ENST00000263857 UNC80Q8N2C7 3258 aa3.71□□□□□ -1.82
POLR1A-201ENST00000263857 MYO15AQ9UKN7 3530 aa3.71□□□□□ -1.82
POLR1A-201ENST00000263857 ZFHX3Q15911 3703 aa3.69□□□□□ -1.82
POLR1A-201ENST00000263857 KRTAP10-8P60410 259 aa3.68□□□□□ -1.82
POLR1A-201ENST00000263857 DNAH14Q0VDD8 3507 aa3.67□□□□□ -1.82
POLR1A-201ENST00000263857 BRCA2P51587 3418 aa3.66□□□□□ -1.82
POLR1A-201ENST00000263857 LOC400499M0QZD8 3231 aa3.65□□□□□ -1.83
POLR1A-201ENST00000263857 USP34Q70CQ2 3546 aa3.64□□□□□ -1.83
POLR1A-201ENST00000263857 KRTAP13-1Q8IUC0 172 aa3.63□□□□□ -1.83
POLR1A-201ENST00000263857 KRTAP13-2Q52LG2 175 aa3.62□□□□□ -1.83
POLR1A-201ENST00000263857 SPTBN5Q9NRC6 3674 aaKnown RBP3.62□□□□□ -1.83
POLR1A-201ENST00000263857 H0YAA0 97 aa3.61□□□□□ -1.83
POLR1A-201ENST00000263857 DCHS1Q96JQ0 3298 aa3.57□□□□□ -1.84
POLR1A-201ENST00000263857 TPRXLQ17RH7 258 aa3.55□□□□□ -1.84
POLR1A-201ENST00000263857 XP32Q5T750 250 aa3.53□□□□□ -1.84
POLR1A-201ENST00000263857 INE1O15225 51 aa3.52□□□□□ -1.85
POLR1A-201ENST00000263857 KRTAP10-10P60014 251 aa3.51□□□□□ -1.85
POLR1A-201ENST00000263857 NBPF19A0A087WUL8 3843 aa3.5□□□□□ -1.85
POLR1A-201ENST00000263857 SZT2Q5T011 3432 aa3.49□□□□□ -1.85
POLR1A-201ENST00000263857 AKAP9Q99996 3911 aa3.49□□□□□ -1.85
POLR1A-201ENST00000263857 KRTAP13-4Q3LI77 160 aa3.48□□□□□ -1.85
POLR1A-201ENST00000263857 KRTAP7-1Q8IUC3 87 aa3.46□□□□□ -1.86
POLR1A-201ENST00000263857 TRRAPQ9Y4A5 3859 aa3.45□□□□□ -1.86
POLR1A-201ENST00000263857 KRTAP12-2P59991 146 aa3.45□□□□□ -1.86
POLR1A-201ENST00000263857 DMDP11532 3685 aa3.43□□□□□ -1.86
POLR1A-201ENST00000263857 CDH23Q9H251 3354 aa3.43□□□□□ -1.86
POLR1A-201ENST00000263857 KRTAP21-3Q3LHN1 58 aa3.42□□□□□ -1.86
POLR1A-201ENST00000263857 KRTAP23-1A1A580 65 aa3.39□□□□□ -1.87
POLR1A-201ENST00000263857 KRTAP15-1Q3LI76 137 aa3.39□□□□□ -1.87
POLR1A-201ENST00000263857 ZFHX4Q86UP3 3567 aa3.39□□□□□ -1.87
POLR1A-201ENST00000263857 KRTAP1-4P0C5Y4 121 aa3.37□□□□□ -1.87
POLR1A-201ENST00000263857 A0A1B0GVY2 172 aa3.37□□□□□ -1.87
POLR1A-201ENST00000263857 KRTAP13-3Q3SY46 172 aa3.36□□□□□ -1.87
POLR1A-201ENST00000263857 SMG1Q96Q15 3661 aaKnown RBP3.31□□□□□ -1.88
POLR1A-201ENST00000263857 ZNF469Q96JG9 3925 aaPredicted RBP3.3□□□□□ -1.88
POLR1A-201ENST00000263857 SPENQ96T58 3664 aaKnown RBP3.3□□□□□ -1.88
POLR1A-201ENST00000263857 ALMS1Q8TCU4 4167 aa3.3□□□□□ -1.88
POLR1A-201ENST00000263857 VPS13CQ709C8 3753 aa3.28□□□□□ -1.88
POLR1A-201ENST00000263857 KRTAP12-1P59990 96 aa3.27□□□□□ -1.89
POLR1A-201ENST00000263857 BSNQ9UPA5 3926 aa3.27□□□□□ -1.89
POLR1A-201ENST00000263857 WDFY3Q8IZQ1 3526 aa3.27□□□□□ -1.89
POLR1A-201ENST00000263857 LYSTQ99698 3801 aa3.24□□□□□ -1.89
POLR1A-201ENST00000263857 LAMA5O15230 3695 aa3.21□□□□□ -1.9
POLR1A-201ENST00000263857 CMYA5Q8N3K9 4069 aa3.19□□□□□ -1.9
POLR1A-201ENST00000263857 DNAH3Q8TD57 4116 aa3.16□□□□□ -1.9
POLR1A-201ENST00000263857 ASPMQ8IZT6 3477 aa3.16□□□□□ -1.9
POLR1A-201ENST00000263857 KRTAP10-12P60413 245 aa3.15□□□□□ -1.91
POLR1A-201ENST00000263857 RELNP78509 3460 aa3.14□□□□□ -1.91
POLR1A-201ENST00000263857 HECTD4Q9Y4D8 3996 aa3.13□□□□□ -1.91
POLR1A-201ENST00000263857 DNAH7Q8WXX0 4024 aa3.13□□□□□ -1.91
POLR1A-201ENST00000263857 DNAH1Q9P2D7 4330 aa3.12□□□□□ -1.91
POLR1A-201ENST00000263857 ANK2Q01484 3957 aa3.11□□□□□ -1.91
POLR1A-201ENST00000263857 KRTAP10-6P60371 365 aaPredicted RBP3.04□□□□□ -1.92
POLR1A-201ENST00000263857 KRTAP12-3P60328 96 aa3.04□□□□□ -1.92
POLR1A-201ENST00000263857 DNAH2Q9P225 4427 aa3.02□□□□□ -1.93
POLR1A-201ENST00000263857 CSMD3Q7Z407 3707 aa2.99□□□□□ -1.93
POLR1A-201ENST00000263857 MUC3AQ02505 3323 aa2.99□□□□□ -1.93
POLR1A-201ENST00000263857 KRTAP3-1Q9BYR8 98 aa2.98□□□□□ -1.93
POLR1A-201ENST00000263857 CUBNO60494 3623 aa2.98□□□□□ -1.93
POLR1A-201ENST00000263857 CRCT1Q9UGL9 99 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms