RNA–Protein interactions for RNA: ENST00000261609.11

HERC2-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERC2, Length 15,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-201ENST00000261609 R4GN34 69 aa4.22□□□□□ -1.73
HERC2-201ENST00000261609 KRTAP4-16G5E9R7 235 aaPredicted RBP4.21□□□□□ -1.74
HERC2-201ENST00000261609 SEC61BP60468 96 aaKnown RBP4.21□□□□□ -1.74
HERC2-201ENST00000261609 ATMQ13315 3056 aa4.21□□□□□ -1.74
HERC2-201ENST00000261609 PLAC4Q8WY50 150 aa4.2□□□□□ -1.74
HERC2-201ENST00000261609 A8MUU9 505 aa4.19□□□□□ -1.74
HERC2-201ENST00000261609 TNRC18O15417 2968 aaPredicted RBP4.19□□□□□ -1.74
HERC2-201ENST00000261609 TENM4Q6N022 2769 aa4.17□□□□□ -1.74
HERC2-201ENST00000261609 M0QZ58 72 aa4.17□□□□□ -1.74
HERC2-201ENST00000261609 KRTAP11-1Q8IUC1 163 aa4.17□□□□□ -1.74
HERC2-201ENST00000261609 COL6A3P12111 3177 aa4.16□□□□□ -1.74
HERC2-201ENST00000261609 TGP01266 2768 aa4.15□□□□□ -1.74
HERC2-201ENST00000261609 KRTAP1-5Q9BYS1 174 aa4.15□□□□□ -1.75
HERC2-201ENST00000261609 M0R2T5 61 aa4.14□□□□□ -1.75
HERC2-201ENST00000261609 C20orf166-AS1Q96NR2 134 aa4.14□□□□□ -1.75
HERC2-201ENST00000261609 PKD1L1Q8TDX9 2849 aa4.11□□□□□ -1.75
HERC2-201ENST00000261609 CELSR1Q9NYQ6 3014 aa4.1□□□□□ -1.75
HERC2-201ENST00000261609 KRTAP10-1P60331 282 aa4.09□□□□□ -1.76
HERC2-201ENST00000261609 DNAH14Q0VDD8 3507 aa4.09□□□□□ -1.76
HERC2-201ENST00000261609 MXRA5Q9NR99 2828 aa4.07□□□□□ -1.76
HERC2-201ENST00000261609 CDH23Q9H251 3354 aa4.06□□□□□ -1.76
HERC2-201ENST00000261609 VWFP04275 2813 aa4.05□□□□□ -1.76
HERC2-201ENST00000261609 RPS29P62273 56 aaKnown RBP4.05□□□□□ -1.76
HERC2-201ENST00000261609 KRTAP10-2P60368 255 aa4.04□□□□□ -1.76
HERC2-201ENST00000261609 LAMA3Q16787 3333 aa4.04□□□□□ -1.76
HERC2-201ENST00000261609 SRRM2Q9UQ35 2752 aaKnown RBP4.03□□□□□ -1.76
HERC2-201ENST00000261609 Q5VSD8 79 aa4.03□□□□□ -1.76
HERC2-201ENST00000261609 KRTAP7-1Q8IUC3 87 aa4.02□□□□□ -1.77
HERC2-201ENST00000261609 HRNRQ86YZ3 2850 aaPredicted RBP4.02□□□□□ -1.77
HERC2-201ENST00000261609 C10orf95Q9H7T3 257 aa4.01□□□□□ -1.77
HERC2-201ENST00000261609 H0YAA0 97 aa3.98□□□□□ -1.77
HERC2-201ENST00000261609 KRTAP13-1Q8IUC0 172 aa3.98□□□□□ -1.77
HERC2-201ENST00000261609 VCANP13611 3396 aa3.97□□□□□ -1.77
HERC2-201ENST00000261609 P0C880 135 aa3.97□□□□□ -1.77
HERC2-201ENST00000261609 BRCA2P51587 3418 aa3.96□□□□□ -1.78
HERC2-201ENST00000261609 Q6ZRN7 208 aaPredicted RBP3.94□□□□□ -1.78
HERC2-201ENST00000261609 PP632Q6XCG6 107 aa3.93□□□□□ -1.78
HERC2-201ENST00000261609 KRTAP13-2Q52LG2 175 aa3.92□□□□□ -1.78
HERC2-201ENST00000261609 EYSQ5T1H1 3165 aa3.92□□□□□ -1.78
HERC2-201ENST00000261609 TNP1P09430 55 aa3.91□□□□□ -1.78
HERC2-201ENST00000261609 TENM2Q9NT68 2774 aa3.89□□□□□ -1.79
HERC2-201ENST00000261609 KRTAP10-8P60410 259 aa3.88□□□□□ -1.79
HERC2-201ENST00000261609 COL7A1Q02388 2944 aa3.87□□□□□ -1.79
HERC2-201ENST00000261609 SZT2Q5T011 3432 aa3.86□□□□□ -1.79
HERC2-201ENST00000261609 FBN1P35555 2871 aaKnown RBP3.86□□□□□ -1.79
HERC2-201ENST00000261609 SPEGQ15772 3267 aa3.85□□□□□ -1.79
HERC2-201ENST00000261609 MYO15AQ9UKN7 3530 aa3.82□□□□□ -1.8
HERC2-201ENST00000261609 MEGF8Q7Z7M0 2845 aa3.8□□□□□ -1.8
HERC2-201ENST00000261609 AKAP9Q99996 3911 aa3.77□□□□□ -1.81
HERC2-201ENST00000261609 SPTBN5Q9NRC6 3674 aaKnown RBP3.77□□□□□ -1.81
HERC2-201ENST00000261609 ZFHX3Q15911 3703 aa3.76□□□□□ -1.81
HERC2-201ENST00000261609 FBN3Q75N90 2809 aa3.76□□□□□ -1.81
HERC2-201ENST00000261609 USP34Q70CQ2 3546 aa3.76□□□□□ -1.81
HERC2-201ENST00000261609 LOC400499M0QZD8 3231 aa3.75□□□□□ -1.81
HERC2-201ENST00000261609 TPRXLQ17RH7 258 aa3.74□□□□□ -1.81
HERC2-201ENST00000261609 DCHS1Q96JQ0 3298 aa3.72□□□□□ -1.81
HERC2-201ENST00000261609 NBPF19A0A087WUL8 3843 aa3.72□□□□□ -1.81
HERC2-201ENST00000261609 KRTAP1-4P0C5Y4 121 aa3.71□□□□□ -1.82
HERC2-201ENST00000261609 OTOGQ6ZRI0 2925 aa3.71□□□□□ -1.82
HERC2-201ENST00000261609 XP32Q5T750 250 aa3.7□□□□□ -1.82
HERC2-201ENST00000261609 KRTAP12-2P59991 146 aa3.68□□□□□ -1.82
HERC2-201ENST00000261609 WDFY3Q8IZQ1 3526 aa3.67□□□□□ -1.82
HERC2-201ENST00000261609 KRTAP13-3Q3SY46 172 aa3.67□□□□□ -1.82
HERC2-201ENST00000261609 KRTAP15-1Q3LI76 137 aa3.64□□□□□ -1.83
HERC2-201ENST00000261609 DMDP11532 3685 aa3.63□□□□□ -1.83
HERC2-201ENST00000261609 ALMS1Q8TCU4 4167 aa3.63□□□□□ -1.83
HERC2-201ENST00000261609 LAMA5O15230 3695 aa3.62□□□□□ -1.83
HERC2-201ENST00000261609 CSMD1Q96PZ7 3565 aa3.61□□□□□ -1.83
HERC2-201ENST00000261609 TRRAPQ9Y4A5 3859 aa3.61□□□□□ -1.83
HERC2-201ENST00000261609 ZFHX4Q86UP3 3567 aa3.61□□□□□ -1.83
HERC2-201ENST00000261609 SMG1Q96Q15 3661 aaKnown RBP3.59□□□□□ -1.83
HERC2-201ENST00000261609 KRTAP12-1P59990 96 aa3.59□□□□□ -1.84
HERC2-201ENST00000261609 ASPMQ8IZT6 3477 aa3.58□□□□□ -1.84
HERC2-201ENST00000261609 KRTAP13-4Q3LI77 160 aa3.57□□□□□ -1.84
HERC2-201ENST00000261609 PRO2289Q9P1D8 64 aa3.56□□□□□ -1.84
HERC2-201ENST00000261609 A0A1B0GVY2 172 aa3.55□□□□□ -1.84
HERC2-201ENST00000261609 INE1O15225 51 aa3.52□□□□□ -1.85
HERC2-201ENST00000261609 KRTAP10-10P60014 251 aa3.52□□□□□ -1.85
HERC2-201ENST00000261609 KRTAP3-1Q9BYR8 98 aa3.52□□□□□ -1.85
HERC2-201ENST00000261609 ANK3Q12955 4377 aaKnown RBP3.51□□□□□ -1.85
HERC2-201ENST00000261609 CUBNO60494 3623 aa3.51□□□□□ -1.85
HERC2-201ENST00000261609 CSMD3Q7Z407 3707 aa3.49□□□□□ -1.85
HERC2-201ENST00000261609 VPS13CQ709C8 3753 aa3.49□□□□□ -1.85
HERC2-201ENST00000261609 DNAH1Q9P2D7 4330 aa3.49□□□□□ -1.85
HERC2-201ENST00000261609 RELNP78509 3460 aa3.48□□□□□ -1.85
HERC2-201ENST00000261609 KRTAP10-6P60371 365 aaPredicted RBP3.47□□□□□ -1.85
HERC2-201ENST00000261609 SVEP1Q4LDE5 3571 aa3.45□□□□□ -1.86
HERC2-201ENST00000261609 DNAH2Q9P225 4427 aa3.45□□□□□ -1.86
HERC2-201ENST00000261609 KRTAP21-3Q3LHN1 58 aa3.44□□□□□ -1.86
HERC2-201ENST00000261609 SPENQ96T58 3664 aaKnown RBP3.43□□□□□ -1.86
HERC2-201ENST00000261609 CMYA5Q8N3K9 4069 aa3.42□□□□□ -1.86
HERC2-201ENST00000261609 DNAH11Q96DT5 4516 aa3.41□□□□□ -1.86
HERC2-201ENST00000261609 DNAH3Q8TD57 4116 aa3.41□□□□□ -1.86
HERC2-201ENST00000261609 DNAH10Q8IVF4 4471 aa3.37□□□□□ -1.87
HERC2-201ENST00000261609 ZNF469Q96JG9 3925 aaPredicted RBP3.36□□□□□ -1.87
HERC2-201ENST00000261609 HUWE1Q7Z6Z7 4374 aaKnown RBP3.36□□□□□ -1.87
HERC2-201ENST00000261609 KRTAP3-2Q9BYR7 98 aa3.35□□□□□ -1.87
HERC2-201ENST00000261609 DNAH7Q8WXX0 4024 aa3.33□□□□□ -1.88
HERC2-201ENST00000261609 HECTD4Q9Y4D8 3996 aa3.32□□□□□ -1.88
HERC2-201ENST00000261609 BSNQ9UPA5 3926 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms