RNA–Protein interactions for RNA: ENST00000261609.11

HERC2-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HERC2, Length 15,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-201ENST00000261609 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.38□□□□□ -1.078e-7■■■■■ 158.5
HERC2-201ENST00000261609 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.43□□□□□ -1.222e-6■■■■■ 100.4
HERC2-201ENST00000261609 SF3B1O75533 1304 aaKnown RBP eCLIP7.28□□□□□ -1.242e-6■■■■■ 100.3
HERC2-201ENST00000261609 WRNQ14191 1432 aaPredicted RBP eCLIP8.9□□□□□ -0.993e-11■■■■■ 100.3
HERC2-201ENST00000261609 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.41□□□□□ -1.381e-6■■■■■ 62.7
HERC2-201ENST00000261609 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.62□□□□□ -1.192e-6■■■■■ 58.1
HERC2-201ENST00000261609 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.2□□□□□ -1.266e-12■■■■■ 57.9
HERC2-201ENST00000261609 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.7□□□□□ -1.343e-7■■■■■ 56.6
HERC2-201ENST00000261609 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.61□□□□□ -1.191e-6■■■■■ 48.4
HERC2-201ENST00000261609 ZC3H11AO75152 810 aaKnown RBP eCLIP7.3□□□□□ -1.244e-7■■■■■ 41.2
HERC2-201ENST00000261609 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.27□□□□□ -1.256e-6■■■■■ 38.2
HERC2-201ENST00000261609 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.76□□□□□ -1.335e-9■■■■■ 33.2
HERC2-201ENST00000261609 HNRNPMP52272 730 aaKnown RBP eCLIP8.47□□□□□ -1.055e-7■■■■■ 31.7
HERC2-201ENST00000261609 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.49□□□□□ -1.371e-6■■■■■ 29.8
HERC2-201ENST00000261609 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.32□□□□□ -1.087e-7■■■■■ 27.7
HERC2-201ENST00000261609 TROVE2P10155 538 aaKnown RBP eCLIP7.93□□□□□ -1.144e-17■■■■■ 27.6
HERC2-201ENST00000261609 EIF4G2P78344 907 aaKnown RBP eCLIP9.29□□□□□ -0.923e-7■■■■□ 25.7
HERC2-201ENST00000261609 PTBP1P26599 531 aaKnown RBP eCLIP6.73□□□□□ -1.332e-7■■■■□ 25.3
HERC2-201ENST00000261609 AQRO60306 1485 aaKnown RBP eCLIP7.99□□□□□ -1.131e-6■■■■□ 24.6
HERC2-201ENST00000261609 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.91□□□□□ -1.36e-7■■■■□ 23.7
HERC2-201ENST00000261609 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.49□□□□□ -1.218e-7■■■■□ 22.9
HERC2-201ENST00000261609 SF3B4Q15427 424 aaKnown RBP eCLIP6.95□□□□□ -1.39e-7■■■■□ 22.9
HERC2-201ENST00000261609 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.16□□□□□ -1.264e-7■■■■□ 22.7
HERC2-201ENST00000261609 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.17□□□□□ -0.942e-7■■■■□ 22.7
HERC2-201ENST00000261609 FXR2P51116 673 aaKnown RBP eCLIP7.35□□□□□ -1.231e-6■■■■□ 22.2
HERC2-201ENST00000261609 PRPF4O43172 522 aaKnown RBP eCLIP7.38□□□□□ -1.231e-6■■■■□ 21.5
HERC2-201ENST00000261609 RBM22Q9NW64 420 aaKnown RBP eCLIP7.18□□□□□ -1.263e-6■■■■□ 21.1
HERC2-201ENST00000261609 AARSP49588 968 aaKnown RBP eCLIP7.65□□□□□ -1.183e-6■■■■□ 21
HERC2-201ENST00000261609 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.11□□□□□ -1.275e-6■■■■□ 20.5
HERC2-201ENST00000261609 SMNDC1O75940 238 aaKnown RBP eCLIP7.51□□□□□ -1.212e-15■■■■□ 20.4
HERC2-201ENST00000261609 PCBP2Q15366 365 aaKnown RBP eCLIP6.84□□□□□ -1.311e-9■■■■□ 20.3
HERC2-201ENST00000261609 FMR1Q06787 632 aaKnown RBP eCLIP7.55□□□□□ -1.21e-6■■■■□ 20.2
HERC2-201ENST00000261609 EIF3HO15372 352 aaKnown RBP eCLIP7.78□□□□□ -1.161e-6■■■■□ 20.2
HERC2-201ENST00000261609 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.54□□□□□ -1.042e-6■■■■□ 19.8
HERC2-201ENST00000261609 ZRANB2O95218 330 aaKnown RBP eCLIP7.68□□□□□ -1.181e-6■■■■□ 19.3
HERC2-201ENST00000261609 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.96□□□□□ -1.291e-8■■■□□ 19.2
HERC2-201ENST00000261609 EFTUD2Q15029 972 aaKnown RBP eCLIP7.63□□□□□ -1.192e-7■■■□□ 19
HERC2-201ENST00000261609 TARDBPQ13148 414 aaKnown RBP eCLIP7.03□□□□□ -1.281e-6■■■□□ 19
HERC2-201ENST00000261609 RBFOX2O43251 390 aaKnown RBP eCLIP6.18□□□□□ -1.423e-6■■■□□ 18
HERC2-201ENST00000261609 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.5□□□□□ -1.053e-6■■■□□ 17.7
HERC2-201ENST00000261609 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.66□□□□□ -1.187e-7■■■□□ 17.1
HERC2-201ENST00000261609 KHSRPQ92945 711 aaKnown RBP eCLIP6.66□□□□□ -1.341e-6■■■□□ 16.9
HERC2-201ENST00000261609 PPIGQ13427 754 aaKnown RBP eCLIP6.86□□□□□ -1.317e-7■■■□□ 16.9
HERC2-201ENST00000261609 DKC1O60832 514 aaKnown RBP eCLIP7.8□□□□□ -1.167e-8■■■□□ 16.4
HERC2-201ENST00000261609 PABPC4Q13310 644 aaKnown RBP eCLIP7.6□□□□□ -1.192e-6■■■□□ 16.4
HERC2-201ENST00000261609 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.3□□□□□ -1.244e-6■■■□□ 16
HERC2-201ENST00000261609 DDX6P26196 483 aaKnown RBP eCLIP6.98□□□□□ -1.294e-6■■■□□ 15.9
HERC2-201ENST00000261609 TIA1P31483 386 aaKnown RBP eCLIP6.81□□□□□ -1.323e-6■■■□□ 15.7
HERC2-201ENST00000261609 MATR3P43243 847 aaKnown RBP eCLIP8.27□□□□□ -1.094e-6■■■□□ 15.2
HERC2-201ENST00000261609 AATFQ9NY61 560 aaKnown RBP eCLIP7.81□□□□□ -1.164e-7■■■□□ 15.2
HERC2-201ENST00000261609 ZNF622Q969S3 477 aaKnown RBP eCLIP8.19□□□□□ -1.11e-6■■■□□ 14.9
HERC2-201ENST00000261609 SUB1P53999 127 aaKnown RBP eCLIP6.48□□□□□ -1.377e-7■■□□□ 14.5
HERC2-201ENST00000261609 METAP2P50579 478 aaKnown RBP eCLIP8.09□□□□□ -1.113e-6■■□□□ 14.5
HERC2-201ENST00000261609 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.2□□□□□ -1.13e-7■■□□□ 14.4
HERC2-201ENST00000261609 SF3A3Q12874 501 aaKnown RBP eCLIP8.09□□□□□ -1.112e-11■■□□□ 14.1
HERC2-201ENST00000261609 EIF3DO15371 548 aaKnown RBP eCLIP7.39□□□□□ -1.232e-6■■□□□ 13.9
HERC2-201ENST00000261609 SRSF1Q07955 248 aaKnown RBP eCLIP6.07□□□□□ -1.441e-8■■□□□ 13.4
HERC2-201ENST00000261609 YBX3P16989 372 aaKnown RBP eCLIP7.15□□□□□ -1.262e-7■■□□□ 13.3
HERC2-201ENST00000261609 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.06□□□□□ -1.289e-6■■□□□ 12.8
HERC2-201ENST00000261609 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.05□□□□□ -1.122e-6■■□□□ 12.2
HERC2-201ENST00000261609 U2AF2P26368 475 aaKnown RBP eCLIP8.3□□□□□ -1.082e-6■■□□□ 12.2
HERC2-201ENST00000261609 HLTFQ14527 1009 aaKnown RBP eCLIP8.28□□□□□ -1.084e-7■□□□□ 10
HERC2-201ENST00000261609 U2AF1Q01081 240 aaKnown RBP eCLIP8.8□□□□□ -16e-7■□□□□ 9.4
HERC2-201ENST00000261609 HNRNPKP61978 463 aaKnown RBP eCLIP6.72□□□□□ -1.334e-6■□□□□ 8.7
HERC2-201ENST00000261609 AGGF1Q8N302 714 aaeCLIP7.71□□□□□ -1.174e-6■□□□□ 8.7
HERC2-201ENST00000261609 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.82□□□□□ -1.326e-6■□□□□ 8.6
HERC2-201ENST00000261609 HNRNPCP07910 306 aaKnown RBP eCLIP7.89□□□□□ -1.157e-6■□□□□ 8.2
Retrieved 67 of 67 RNA–protein pairs in 31.4 ms