RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	SPT6	P23615	1451 aa	Known RBP	4.71	□□□□□ -1.66
PEX1	YKL197C	UBP9	P39967	754 aa		4.71	□□□□□ -1.66
PEX1	YKL197C	RPS0B	P46654	252 aa	Known RBP	4.7	□□□□□ -1.66
PEX1	YKL197C	WSC3	Q12215	556 aa		4.7	□□□□□ -1.66
PEX1	YKL197C	SET1	P38827	1080 aa	Known RBP	4.69	□□□□□ -1.66
PEX1	YKL197C	SET4	P42948	560 aa		4.69	□□□□□ -1.66
PEX1	YKL197C	MSB4	Q12317	492 aa		4.68	□□□□□ -1.66
PEX1	YKL197C	THO2	P53552	1597 aa	Known RBP	4.68	□□□□□ -1.66
PEX1	YKL197C	NOP53	Q12080	455 aa	Known RBP	4.68	□□□□□ -1.66
PEX1	YKL197C	SAS10	Q12136	610 aa	Predicted RBP	4.68	□□□□□ -1.66
PEX1	YKL197C	HIR3	P47171	1648 aa		4.68	□□□□□ -1.66
PEX1	YKL197C	MIF2	P35201	549 aa		4.68	□□□□□ -1.66
PEX1	YKL197C	TIF11	P38912	153 aa	Known RBP	4.68	□□□□□ -1.66
PEX1	YKL197C	CWC22	P53333	577 aa	Known RBP	4.68	□□□□□ -1.66
PEX1	YKL197C	YPR148C	Q06523	435 aa		4.68	□□□□□ -1.66
PEX1	YKL197C	DAN4	P47179	1161 aa		4.67	□□□□□ -1.66
PEX1	YKL197C	SPA2	P23201	1466 aa	Known RBP	4.67	□□□□□ -1.66
PEX1	YKL197C	TRP5	P00931	707 aa	Known RBP	4.66	□□□□□ -1.66
PEX1	YKL197C	IFH1	P39520	1085 aa		4.66	□□□□□ -1.66
PEX1	YKL197C	SPP1	Q03012	353 aa		4.65	□□□□□ -1.66
PEX1	YKL197C	GTT3	P39996	337 aa		4.65	□□□□□ -1.67
PEX1	YKL197C	GYP5	Q12344	894 aa		4.64	□□□□□ -1.67
PEX1	YKL197C	ILV3	P39522	585 aa	Known RBP	4.63	□□□□□ -1.67
PEX1	YKL197C	ORC1	P54784	914 aa	Predicted RBP	4.63	□□□□□ -1.67
PEX1	YKL197C	AIR2	Q12476	344 aa	Known RBP	4.63	□□□□□ -1.67
PEX1	YKL197C	SIN3	P22579	1536 aa		4.63	□□□□□ -1.67
PEX1	YKL197C	GUT1	P32190	709 aa		4.62	□□□□□ -1.67
PEX1	YKL197C	FKH1	P40466	484 aa		4.62	□□□□□ -1.67
PEX1	YKL197C	ULI1	P43604	169 aa		4.62	□□□□□ -1.67
PEX1	YKL197C	LDB19	Q12502	818 aa		4.62	□□□□□ -1.67
PEX1	YKL197C	GRE2	Q12068	342 aa	Known RBP	4.61	□□□□□ -1.67
PEX1	YKL197C	DCW1	P36091	449 aa		4.6	□□□□□ -1.67
PEX1	YKL197C	UBP14	P38237	781 aa	Known RBP	4.59	□□□□□ -1.67
PEX1	YKL197C	YEL023C	P39992	682 aa		4.59	□□□□□ -1.67
PEX1	YKL197C	YGR273C	P53329	174 aa		4.59	□□□□□ -1.67
PEX1	YKL197C	EAP1	P36041	632 aa	Known RBP	4.59	□□□□□ -1.67
PEX1	YKL197C	ABP1	P15891	592 aa	Known RBP	4.59	□□□□□ -1.68
PEX1	YKL197C	SSN2	P38931	1420 aa		4.59	□□□□□ -1.68
PEX1	YKL197C	YDR090C	Q03193	310 aa		4.58	□□□□□ -1.68
PEX1	YKL197C	HTA1	P04911	132 aa	Known RBP	4.57	□□□□□ -1.68
PEX1	YKL197C	HTA2	P04912	132 aa		4.57	□□□□□ -1.68
PEX1	YKL197C	PTC4	P38089	393 aa		4.57	□□□□□ -1.68
PEX1	YKL197C	YDR344C	Q05510	147 aa		4.57	□□□□□ -1.68
PEX1	YKL197C	PEP1	P32319	1579 aa		4.57	□□□□□ -1.68
PEX1	YKL197C	PSH1	Q12161	406 aa		4.57	□□□□□ -1.68
PEX1	YKL197C	ATH1	P48016	1211 aa		4.57	□□□□□ -1.68
PEX1	YKL197C	SSK2	P53599	1579 aa		4.56	□□□□□ -1.68
PEX1	YKL197C	SNU71	P53207	620 aa	Known RBP	4.56	□□□□□ -1.68
PEX1	YKL197C	YLR326W	Q06170	240 aa	Known RBP	4.56	□□□□□ -1.68
PEX1	YKL197C	MPH3	P0CE00	602 aa		4.56	□□□□□ -1.68
PEX1	YKL197C	RLP24	Q07915	199 aa	Known RBP	4.55	□□□□□ -1.68
PEX1	YKL197C	ATG2	P53855	1592 aa		4.55	□□□□□ -1.68
PEX1	YKL197C	AI4	P03878	556 aa		4.55	□□□□□ -1.68
PEX1	YKL197C	RTG1	P32607	177 aa		4.55	□□□□□ -1.68
PEX1	YKL197C	YNL035C	P53962	389 aa	Known RBP	4.55	□□□□□ -1.68
PEX1	YKL197C	SEC61	P32915	480 aa		4.54	□□□□□ -1.68
PEX1	YKL197C	BUD4	P47136	1447 aa		4.54	□□□□□ -1.68
PEX1	YKL197C	SIS1	P25294	352 aa	Known RBP	4.54	□□□□□ -1.68
PEX1	YKL197C	JIP4	Q03361	876 aa		4.54	□□□□□ -1.68
PEX1	YKL197C	REV3	P14284	1504 aa		4.53	□□□□□ -1.68
PEX1	YKL197C	KEX1	P09620	729 aa		4.52	□□□□□ -1.69
PEX1	YKL197C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
PEX1	YKL197C	VPS70	P47161	811 aa		4.52	□□□□□ -1.69
PEX1	YKL197C	TOP1	P04786	769 aa		4.51	□□□□□ -1.69
PEX1	YKL197C	MID1	P41821	548 aa		4.51	□□□□□ -1.69
PEX1	YKL197C	MDS3	P53094	1487 aa		4.51	□□□□□ -1.69
PEX1	YKL197C	XRN1	P22147	1528 aa	Known RBP	4.51	□□□□□ -1.69
PEX1	YKL197C	SLI15	P38283	698 aa		4.5	□□□□□ -1.69
PEX1	YKL197C	MDG1	P53885	366 aa		4.5	□□□□□ -1.69
PEX1	YKL197C	NCR1	Q12200	1170 aa		4.5	□□□□□ -1.69
PEX1	YKL197C	AIM44	Q99299	758 aa		4.5	□□□□□ -1.69
PEX1	YKL197C	DEF1	P35732	738 aa	Known RBP	4.49	□□□□□ -1.69
PEX1	YKL197C	VHR2	P40041	505 aa		4.49	□□□□□ -1.69
PEX1	YKL197C	ENV11	P53246	860 aa		4.49	□□□□□ -1.69
PEX1	YKL197C	MNN4	P36044	1178 aa		4.49	□□□□□ -1.69
PEX1	YKL197C	GAP1	P19145	602 aa	Predicted RBP	4.48	□□□□□ -1.69
PEX1	YKL197C	PML39	Q03760	334 aa		4.48	□□□□□ -1.69
PEX1	YKL197C	ESP1	Q03018	1630 aa		4.48	□□□□□ -1.69
PEX1	YKL197C	REF2	P42073	533 aa	Predicted RBP	4.47	□□□□□ -1.69
PEX1	YKL197C	COX6	P00427	148 aa		4.46	□□□□□ -1.69
PEX1	YKL197C	DSF2	P38213	736 aa		4.46	□□□□□ -1.69
PEX1	YKL197C	YDL129W	Q07555	291 aa		4.45	□□□□□ -1.7
PEX1	YKL197C	ECM5	Q03214	1411 aa		4.44	□□□□□ -1.7
PEX1	YKL197C	MPC54	Q08550	464 aa		4.44	□□□□□ -1.7
PEX1	YKL197C	MYO2	P19524	1574 aa	Known RBP	4.44	□□□□□ -1.7
PEX1	YKL197C	SWE1	P32944	819 aa		4.43	□□□□□ -1.7
PEX1	YKL197C	CKB1	P43639	278 aa		4.43	□□□□□ -1.7
PEX1	YKL197C	NUP42	P49686	430 aa	Known RBP	4.43	□□□□□ -1.7
PEX1	YKL197C	PBS2	P08018	668 aa		4.43	□□□□□ -1.7
PEX1	YKL197C	ORC6	P38826	435 aa		4.43	□□□□□ -1.7
PEX1	YKL197C	CDC73	Q06697	393 aa		4.43	□□□□□ -1.7
PEX1	YKL197C	SAP30	P38429	201 aa		4.42	□□□□□ -1.7
PEX1	YKL197C	ATG36	P46983	293 aa		4.41	□□□□□ -1.7
PEX1	YKL197C	BMT6	Q12291	365 aa		4.41	□□□□□ -1.7
PEX1	YKL197C	RAM1	P22007	431 aa		4.4	□□□□□ -1.7
PEX1	YKL197C	PEX29	Q03370	554 aa		4.4	□□□□□ -1.7
PEX1	YKL197C	YPK9	Q12697	1472 aa		4.4	□□□□□ -1.7
PEX1	YKL197C	ARH1	P48360	493 aa		4.4	□□□□□ -1.71
PEX1	YKL197C	MAK21	Q12176	1025 aa	Known RBP	4.39	□□□□□ -1.71
PEX1	YKL197C	RAD54	P32863	898 aa		4.39	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 53.7 ms