RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeastyeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CBF1YJR060W YBL029C-AQ3E756 94 aa8.96□□□□□ -0.98
CBF1YJR060W TAF2P23255 1407 aa8.93□□□□□ -0.98
CBF1YJR060W SKI3P17883 1432 aaKnown RBP8.92□□□□□ -0.98
CBF1YJR060W EDS1P38073 919 aa8.92□□□□□ -0.98
CBF1YJR060W TAF7Q05021 590 aa8.91□□□□□ -0.98
CBF1YJR060W SAM3Q08986 587 aa8.9□□□□□ -0.98
CBF1YJR060W BPT1P14772 1559 aa8.9□□□□□ -0.99
CBF1YJR060W VNX1P42839 908 aa8.89□□□□□ -0.99
CBF1YJR060W PTC3P34221 468 aaKnown RBP8.88□□□□□ -0.99
CBF1YJR060W YPK9Q12697 1472 aa8.88□□□□□ -0.99
CBF1YJR060W SET4P42948 560 aa8.87□□□□□ -0.99
CBF1YJR060W YOL036WQ08206 761 aa8.87□□□□□ -0.99
CBF1YJR060W NOP53Q12080 455 aaKnown RBP8.87□□□□□ -0.99
CBF1YJR060W GYP5Q12344 894 aa8.86□□□□□ -0.99
CBF1YJR060W SPP1Q03012 353 aa8.85□□□□□ -0.99
CBF1YJR060W MSB4Q12317 492 aa8.85□□□□□ -0.99
CBF1YJR060W GRE2Q12068 342 aaKnown RBP8.84□□□□□ -0.99
CBF1YJR060W ATH1P48016 1211 aa8.83□□□□□ -1
CBF1YJR060W SCC2Q04002 1493 aa8.82□□□□□ -1
CBF1YJR060W TIF11P38912 153 aaKnown RBP8.81□□□□□ -1
CBF1YJR060W IFH1P39520 1085 aa8.81□□□□□ -1
CBF1YJR060W EAP1P36041 632 aaKnown RBP8.79□□□□□ -1
CBF1YJR060W ABP1P15891 592 aaKnown RBP8.78□□□□□ -1
CBF1YJR060W GUT1P32190 709 aa8.78□□□□□ -1
CBF1YJR060W DCW1P36091 449 aa8.78□□□□□ -1
CBF1YJR060W YCF1P39109 1515 aaKnown RBP8.78□□□□□ -1
CBF1YJR060W SAS10Q12136 610 aaPredicted RBP8.77□□□□□ -1.01
CBF1YJR060W RPO31P04051 1460 aa8.77□□□□□ -1.01
CBF1YJR060W UFD4P33202 1483 aa8.77□□□□□ -1.01
CBF1YJR060W ULI1P43604 169 aa8.76□□□□□ -1.01
CBF1YJR060W VPS70P47161 811 aa8.75□□□□□ -1.01
CBF1YJR060W YPR148CQ06523 435 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-LR1P0C2J3 1770 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-FP0CX63 1770 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-GR2P0CX64 1770 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-CP25384 1770 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-DR2Q03494 1770 aa8.75□□□□□ -1.01
CBF1YJR060W TY1B-DR1Q03855 1755 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-DR3Q07791 1770 aaKnown RBP8.75□□□□□ -1.01
CBF1YJR060W TY2B-OR1Q12113 1770 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-DR1Q12472 1770 aa8.75□□□□□ -1.01
CBF1YJR060W TY2B-OR2Q12501 1770 aa8.75□□□□□ -1.01
CBF1YJR060W HTA1P04911 132 aaKnown RBP8.74□□□□□ -1.01
CBF1YJR060W HTA2P04912 132 aa8.74□□□□□ -1.01
CBF1YJR060W TRP5P00931 707 aaKnown RBP8.73□□□□□ -1.01
CBF1YJR060W LEO1P38439 464 aa8.71□□□□□ -1.02
CBF1YJR060W POL1P13382 1468 aa8.7□□□□□ -1.02
CBF1YJR060W IOC2Q12072 812 aa8.69□□□□□ -1.02
CBF1YJR060W RKR1Q04781 1562 aa8.69□□□□□ -1.02
CBF1YJR060W CDC25P04821 1589 aa8.68□□□□□ -1.02
CBF1YJR060W LDB19Q12502 818 aa8.67□□□□□ -1.02
CBF1YJR060W TY1B-BRQ12193 1756 aa8.66□□□□□ -1.02
CBF1YJR060W TY1B-GR3Q12316 1755 aa8.66□□□□□ -1.02
CBF1YJR060W TY2B-BQ12491 1770 aa8.66□□□□□ -1.02
CBF1YJR060W TY1B-ORQ92393 1755 aa8.66□□□□□ -1.02
CBF1YJR060W ESC1Q03661 1658 aaKnown RBP8.66□□□□□ -1.02
CBF1YJR060W SIS1P25294 352 aaKnown RBP8.66□□□□□ -1.02
CBF1YJR060W TY1B-DR3Q99231 1755 aa8.66□□□□□ -1.02
CBF1YJR060W YEL023CP39992 682 aa8.65□□□□□ -1.02
CBF1YJR060W CKB1P43639 278 aa8.65□□□□□ -1.02
CBF1YJR060W TOP2P06786 1428 aaKnown RBP8.64□□□□□ -1.03
CBF1YJR060W SOL3P38858 249 aa8.64□□□□□ -1.03
CBF1YJR060W TY1B-HO13535 1793 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-DR5P0C2I2 1755 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-DR6P0C2I3 1755 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-LR2P0C2I5 1755 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-LR3P0C2I6 1755 aaKnown RBP8.63□□□□□ -1.03
CBF1YJR060W TY1B-PR1P0C2I9 1755 aaKnown RBP8.63□□□□□ -1.03
CBF1YJR060W TY1B-PR2P0C2J0 1756 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-PR3P0C2J1 1755 aaKnown RBP8.63□□□□□ -1.03
CBF1YJR060W TY1B-JR1P47098 1755 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-ML2Q03434 1755 aaKnown RBP8.63□□□□□ -1.03
CBF1YJR060W TY1B-ER1Q03612 1755 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-ML1Q04711 1755 aaKnown RBP8.63□□□□□ -1.03
CBF1YJR060W TY1B-GR2Q12269 1755 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-OLQ12273 1755 aa8.63□□□□□ -1.03
CBF1YJR060W TY1B-PLQ12414 1755 aaKnown RBP8.63□□□□□ -1.03
CBF1YJR060W YGR273CP53329 174 aa8.63□□□□□ -1.03
CBF1YJR060W JIP4Q03361 876 aa8.62□□□□□ -1.03
CBF1YJR060W PTC4P38089 393 aa8.61□□□□□ -1.03
CBF1YJR060W YNL035CP53962 389 aaKnown RBP8.61□□□□□ -1.03
CBF1YJR060W CHD1P32657 1468 aa8.61□□□□□ -1.03
CBF1YJR060W YOR1P53049 1477 aa8.6□□□□□ -1.03
CBF1YJR060W RTG1P32607 177 aa8.6□□□□□ -1.03
CBF1YJR060W REF2P42073 533 aaPredicted RBP8.6□□□□□ -1.03
CBF1YJR060W NST1P53935 1240 aa8.59□□□□□ -1.03
CBF1YJR060W VHR2P40041 505 aa8.58□□□□□ -1.04
CBF1YJR060W STU1P38198 1513 aa8.58□□□□□ -1.04
CBF1YJR060W SMC4Q12267 1418 aa8.57□□□□□ -1.04
CBF1YJR060W DAN4P47179 1161 aa8.56□□□□□ -1.04
CBF1YJR060W MPH3P0CE00 602 aa8.55□□□□□ -1.04
CBF1YJR060W SPB4P25808 606 aaPredicted RBP8.55□□□□□ -1.04
CBF1YJR060W SEC61P32915 480 aa8.55□□□□□ -1.04
CBF1YJR060W PAN1P32521 1480 aa8.55□□□□□ -1.04
CBF1YJR060W RPA190P10964 1664 aaKnown RBP8.54□□□□□ -1.04
CBF1YJR060W AI4P03878 556 aa8.54□□□□□ -1.04
CBF1YJR060W UBP14P38237 781 aaKnown RBP8.54□□□□□ -1.04
CBF1YJR060W PBS2P08018 668 aa8.53□□□□□ -1.04
CBF1YJR060W FKH1P40466 484 aa8.53□□□□□ -1.04
CBF1YJR060W YLR326WQ06170 240 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms