RNA–Protein interactions for RNA: YJR060W

CBF1, Transcript of Basic helix-loop-helix (bHLH) protein, yeastyeast

Gene CBF1, Length 1,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CBF1YJR060W MTC1P47018 478 aaKnown RBP14.52□□□□□ -0.09
CBF1YJR060W DRS1P32892 752 aaKnown RBP14.32□□□□□ -0.12
CBF1YJR060W FAP1P53971 965 aa12.32□□□□□ -0.44
CBF1YJR060W DIP2Q12220 943 aaPredicted RBP12.29□□□□□ -0.44
CBF1YJR060W BFR2Q06631 534 aaKnown RBP12.25□□□□□ -0.45
CBF1YJR060W AVT3P36062 692 aa12.01□□□□□ -0.49
CBF1YJR060W ISW2Q08773 1120 aa11.92□□□□□ -0.5
CBF1YJR060W PRI1P10363 409 aa11.83□□□□□ -0.52
CBF1YJR060W RPG1P38249 964 aaKnown RBP11.76□□□□□ -0.53
CBF1YJR060W AAD16Q02895 342 aa11.7□□□□□ -0.54
CBF1YJR060W RSE1Q04693 1361 aaKnown RBP11.68□□□□□ -0.54
CBF1YJR060W PRY3P47033 881 aa11.53□□□□□ -0.56
CBF1YJR060W TFA1P36100 482 aa11.29□□□□□ -0.6
CBF1YJR060W RPL17AP05740 184 aaKnown RBP11.27□□□□□ -0.61
CBF1YJR060W RPL17BP46990 184 aaKnown RBP11.27□□□□□ -0.61
CBF1YJR060W TSR3Q12094 313 aaKnown RBP11.26□□□□□ -0.61
CBF1YJR060W REB1P21538 810 aa11.18□□□□□ -0.62
CBF1YJR060W HAA1Q12753 694 aaKnown RBP10.85□□□□□ -0.67
CBF1YJR060W MRPL32P25348 183 aa10.83□□□□□ -0.68
CBF1YJR060W YCK3P39962 524 aa10.83□□□□□ -0.68
CBF1YJR060W SPT21P35209 758 aa10.78□□□□□ -0.68
CBF1YJR060W RIM101P33400 625 aa10.59□□□□□ -0.71
CBF1YJR060W YKR023WP36119 530 aaKnown RBP10.52□□□□□ -0.73
CBF1YJR060W CDC27P38042 758 aa10.37□□□□□ -0.75
CBF1YJR060W HOP09932 586 aa10.33□□□□□ -0.76
CBF1YJR060W TFC8Q12308 588 aa10.31□□□□□ -0.76
CBF1YJR060W MON2P48563 1636 aaPredicted RBP10.28□□□□□ -0.76
CBF1YJR060W DCD1P06773 312 aa10.26□□□□□ -0.77
CBF1YJR060W OXP1P28273 1286 aa10.25□□□□□ -0.77
CBF1YJR060W YGL015CP33199 130 aa10.18□□□□□ -0.78
CBF1YJR060W YIL055CP40523 627 aaKnown RBP10.17□□□□□ -0.78
CBF1YJR060W PTP3P40048 928 aa10.12□□□□□ -0.79
CBF1YJR060W INO80P53115 1489 aa10.11□□□□□ -0.79
CBF1YJR060W YAH1Q12184 172 aaKnown RBP10.11□□□□□ -0.79
CBF1YJR060W TCB3Q03640 1545 aaKnown RBP10.03□□□□□ -0.8
CBF1YJR060W BCH2P36122 765 aa10.01□□□□□ -0.81
CBF1YJR060W SSP1P38871 571 aa10.01□□□□□ -0.81
CBF1YJR060W TY1B-DR4Q07793 1604 aa9.98□□□□□ -0.81
CBF1YJR060W MAP2P38174 421 aaKnown RBP9.98□□□□□ -0.81
CBF1YJR060W UBP10P53874 792 aaPredicted RBP9.98□□□□□ -0.81
CBF1YJR060W RSM7P47150 247 aa9.97□□□□□ -0.81
CBF1YJR060W RQC2Q12532 1038 aaKnown RBP9.96□□□□□ -0.82
CBF1YJR060W SGS1P35187 1447 aa9.96□□□□□ -0.82
CBF1YJR060W SCY1P53009 804 aa9.93□□□□□ -0.82
CBF1YJR060W YLR271WQ06152 274 aa9.92□□□□□ -0.82
CBF1YJR060W ARP8Q12386 881 aaKnown RBP RIP-Chip data9.9□□□□□ -0.82not detected
CBF1YJR060W SWR1Q05471 1514 aa9.87□□□□□ -0.83
CBF1YJR060W AI2P03876 854 aa9.83□□□□□ -0.84
CBF1YJR060W EPS1P40557 701 aa9.82□□□□□ -0.84
CBF1YJR060W BBC1P47068 1157 aa9.81□□□□□ -0.84
CBF1YJR060W SLX5P32828 619 aaKnown RBP9.75□□□□□ -0.85
CBF1YJR060W BDF1P35817 686 aa9.75□□□□□ -0.85
CBF1YJR060W KOG1P38873 1557 aa9.7□□□□□ -0.86
CBF1YJR060W HSL1P34244 1518 aa9.69□□□□□ -0.86
CBF1YJR060W DNA2P38859 1522 aa9.67□□□□□ -0.86
CBF1YJR060W MGA2P40578 1113 aa9.67□□□□□ -0.86
CBF1YJR060W PSD2P53037 1138 aaKnown RBP9.67□□□□□ -0.86
CBF1YJR060W SPT6P23615 1451 aaKnown RBP9.64□□□□□ -0.87
CBF1YJR060W TIF4632P39936 914 aaKnown RBP9.62□□□□□ -0.87
CBF1YJR060W CST9Q06032 482 aa9.61□□□□□ -0.87
CBF1YJR060W SPA2P23201 1466 aaKnown RBP9.57□□□□□ -0.88
CBF1YJR060W TGL3P40308 642 aa9.53□□□□□ -0.88
CBF1YJR060W MRM1P25270 412 aa9.52□□□□□ -0.89
CBF1YJR060W HIR3P47171 1648 aa9.47□□□□□ -0.89
CBF1YJR060W RTG3P38165 486 aa9.37□□□□□ -0.91
CBF1YJR060W SSN2P38931 1420 aa9.37□□□□□ -0.91
CBF1YJR060W THO2P53552 1597 aaKnown RBP9.36□□□□□ -0.91
CBF1YJR060W RCR1P38212 213 aa9.3□□□□□ -0.92
CBF1YJR060W XRN1P22147 1528 aaKnown RBP9.3□□□□□ -0.92
CBF1YJR060W YAP5P40574 245 aa9.29□□□□□ -0.92
CBF1YJR060W NSR1P27476 414 aaKnown RBP RIP-Chip data9.28□□□□□ -0.92not detected
CBF1YJR060W BUD4P47136 1447 aa9.28□□□□□ -0.92
CBF1YJR060W VPS29P38759 282 aa9.26□□□□□ -0.93
CBF1YJR060W YOR238WQ08634 303 aa9.25□□□□□ -0.93
CBF1YJR060W DMA1P38823 416 aa9.23□□□□□ -0.93
CBF1YJR060W YMR1P47147 688 aaKnown RBP RIP-Chip data9.22□□□□□ -0.93not detected
CBF1YJR060W REV3P14284 1504 aa9.21□□□□□ -0.93
CBF1YJR060W RAM2P29703 316 aa9.21□□□□□ -0.94
CBF1YJR060W ECM5Q03214 1411 aa9.19□□□□□ -0.94
CBF1YJR060W SIN3P22579 1536 aa9.19□□□□□ -0.94
CBF1YJR060W MST1P07236 462 aa9.18□□□□□ -0.94
CBF1YJR060W PIB1Q06651 286 aa9.18□□□□□ -0.94
CBF1YJR060W MDS3P53094 1487 aa9.17□□□□□ -0.94
CBF1YJR060W DBP1P24784 617 aaKnown RBP9.17□□□□□ -0.94
CBF1YJR060W YFR006WP43590 535 aa9.16□□□□□ -0.94
CBF1YJR060W ATG2P53855 1592 aa9.15□□□□□ -0.95
CBF1YJR060W STS1P38637 319 aa9.14□□□□□ -0.95
CBF1YJR060W MAK11P20484 414 aaKnown RBP9.11□□□□□ -0.95
CBF1YJR060W PEP1P32319 1579 aa9.11□□□□□ -0.95
CBF1YJR060W SSK2P53599 1579 aa9.1□□□□□ -0.95
CBF1YJR060W GTT3P39996 337 aa9.08□□□□□ -0.96
CBF1YJR060W UBP9P39967 754 aa9.05□□□□□ -0.96
CBF1YJR060W ESP1Q03018 1630 aa9.03□□□□□ -0.96
CBF1YJR060W VMA1P17255 1071 aaKnown RBP9.01□□□□□ -0.97
CBF1YJR060W MYO2P19524 1574 aaKnown RBP9.01□□□□□ -0.97
CBF1YJR060W MIF2P35201 549 aa9.01□□□□□ -0.97
CBF1YJR060W COQ8P27697 501 aa8.99□□□□□ -0.97
CBF1YJR060W SET1P38827 1080 aaKnown RBP8.97□□□□□ -0.97
CBF1YJR060W WSC3Q12215 556 aa8.97□□□□□ -0.97
CBF1YJR060W BUD31P25337 157 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms