RNA–Protein interactions for RNA: ENST00000637329.1

CLN6-219, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,204 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-219ENST00000637329 MAGI1Q96QZ7 1491 aaPredicted RBP24.58■■□□□ 1.53
CLN6-219ENST00000637329 CYB5RLQ6IPT4 315 aa24.57■■□□□ 1.52
CLN6-219ENST00000637329 CTTNBP2Q8WZ74 1663 aa24.55■■□□□ 1.52
CLN6-219ENST00000637329 SNAPC4Q5SXM2 1469 aa24.54■■□□□ 1.52
CLN6-219ENST00000637329 ARHGEF11O15085 1522 aa24.54■■□□□ 1.52
CLN6-219ENST00000637329 CLIP1P30622 1438 aa24.5■■□□□ 1.51
CLN6-219ENST00000637329 SYNJ2O15056 1496 aa24.45■■□□□ 1.51
CLN6-219ENST00000637329 GRIN2AQ12879 1464 aa24.41■■□□□ 1.5
CLN6-219ENST00000637329 EFCAB5A4FU69 1503 aa24.39■■□□□ 1.49
CLN6-219ENST00000637329 IQGAP2Q13576 1575 aa24.33■■□□□ 1.48
CLN6-219ENST00000637329 ARHGAP35Q9NRY4 1499 aa24.32■■□□□ 1.48
CLN6-219ENST00000637329 ARAP1Q96P48 1450 aa24.31■■□□□ 1.48
CLN6-219ENST00000637329 VPS8Q8N3P4 1428 aa24.3■■□□□ 1.48
CLN6-219ENST00000637329 SAMD9Q5K651 1589 aa24.29■■□□□ 1.48
CLN6-219ENST00000637329 KIAA0586Q9BVV6 1533 aa24.27■■□□□ 1.48
CLN6-219ENST00000637329 NUP160Q12769 1436 aa24.27■■□□□ 1.48
CLN6-219ENST00000637329 CEP170Q5SW79 1584 aa24.25■■□□□ 1.47
CLN6-219ENST00000637329 CHMP7Q8WUX9 453 aaPredicted RBP24.23■■□□□ 1.47
CLN6-219ENST00000637329 UGGT2Q9NYU1 1516 aa24.22■■□□□ 1.47
CLN6-219ENST00000637329 FBLN2P98095 1184 aa24.22■■□□□ 1.47
CLN6-219ENST00000637329 CHD1O14646 1710 aa24.21■■□□□ 1.47
CLN6-219ENST00000637329 RANGAP1P46060 587 aaPredicted RBP24.14■■□□□ 1.45
CLN6-219ENST00000637329 KIAA0556O60303 1618 aa24.09■■□□□ 1.45
CLN6-219ENST00000637329 FHOD3Q2V2M9 1422 aa24.09■■□□□ 1.45
CLN6-219ENST00000637329 FMN1Q68DA7 1419 aa24.09■■□□□ 1.45
CLN6-219ENST00000637329 FYCO1Q9BQS8 1478 aa24.05■■□□□ 1.44
CLN6-219ENST00000637329 PCF11O94913 1555 aaKnown RBP24.04■■□□□ 1.44
CLN6-219ENST00000637329 DISP1Q96F81 1524 aa24.04■■□□□ 1.44
CLN6-219ENST00000637329 SHROOM2Q13796 1616 aa24.01■■□□□ 1.43
CLN6-219ENST00000637329 MAP3K1Q13233 1512 aa24■■□□□ 1.43
CLN6-219ENST00000637329 CLASP1Q7Z460 1538 aa24■■□□□ 1.43
CLN6-219ENST00000637329 CASKIN1Q8WXD9 1431 aa24■■□□□ 1.43
CLN6-219ENST00000637329 CARMIL2Q6F5E8 1435 aa23.97■■□□□ 1.43
CLN6-219ENST00000637329 CFAP43Q8NDM7 1665 aa23.96■■□□□ 1.43
CLN6-219ENST00000637329 TIAM1Q13009 1591 aa23.93■■□□□ 1.42
CLN6-219ENST00000637329 HECW1Q76N89 1606 aa23.92■■□□□ 1.42
CLN6-219ENST00000637329 APLP2Q06481 763 aa23.91■■□□□ 1.42
CLN6-219ENST00000637329 P3H3Q8IVL6 736 aa23.91■■□□□ 1.42
CLN6-219ENST00000637329 JPH4Q96JJ6 628 aa23.89■■□□□ 1.41
CLN6-219ENST00000637329 CCDC18Q5T9S5 1454 aa23.85■■□□□ 1.41
CLN6-219ENST00000637329 PRG4Q92954 1404 aaPredicted RBP23.84■■□□□ 1.41
CLN6-219ENST00000637329 RAPGEF6Q8TEU7 1601 aa23.81■■□□□ 1.4
CLN6-219ENST00000637329 TRIM26Q12899 539 aaPredicted RBP23.81■■□□□ 1.4
CLN6-219ENST00000637329 LRRIQ1Q96JM4 1722 aa23.79■■□□□ 1.4
CLN6-219ENST00000637329 LRRC9Q6ZRR7 1453 aa23.76■■□□□ 1.39
CLN6-219ENST00000637329 ABCA8O94911 1581 aa23.74■■□□□ 1.39
CLN6-219ENST00000637329 EPRSP07814 1512 aaKnown RBP23.73■■□□□ 1.39
CLN6-219ENST00000637329 NUP153P49790 1475 aaKnown RBP23.71■■□□□ 1.39
CLN6-219ENST00000637329 EHBP1L1Q8N3D4 1523 aa23.7■■□□□ 1.38
CLN6-219ENST00000637329 PPARGC1BQ86YN6 1023 aaKnown RBP23.69■■□□□ 1.38
CLN6-219ENST00000637329 ERCC6L2Q5T890 1561 aa23.67■■□□□ 1.38
CLN6-219ENST00000637329 PLB1Q6P1J6 1458 aa23.67■■□□□ 1.38
CLN6-219ENST00000637329 PTPRGP23470 1445 aa23.67■■□□□ 1.38
CLN6-219ENST00000637329 KANK4Q5T7N3 995 aaPredicted RBP23.65■■□□□ 1.38
CLN6-219ENST00000637329 ATP1B4Q9UN42 357 aaPredicted RBP23.64■■□□□ 1.37
CLN6-219ENST00000637329 CDK13Q14004 1512 aaKnown RBP23.63■■□□□ 1.37
CLN6-219ENST00000637329 PCGF6Q9BYE7 350 aa23.61■■□□□ 1.37
CLN6-219ENST00000637329 MTUS2Q5JR59 1369 aa23.6■■□□□ 1.37
CLN6-219ENST00000637329 SUPT6HQ7KZ85 1726 aaKnown RBP23.59■■□□□ 1.37
CLN6-219ENST00000637329 ABCC2Q92887 1545 aa23.58■■□□□ 1.36
CLN6-219ENST00000637329 UACAQ9BZF9 1416 aa23.58■■□□□ 1.36
CLN6-219ENST00000637329 MAGI3Q5TCQ9 1506 aa23.57■■□□□ 1.36
CLN6-219ENST00000637329 TTBK1Q5TCY1 1321 aaPredicted RBP23.57■■□□□ 1.36
CLN6-219ENST00000637329 UHRF1BP1LA0JNW5 1464 aa23.56■■□□□ 1.36
CLN6-219ENST00000637329 RRBP1Q9P2E9 1410 aaKnown RBP23.55■■□□□ 1.36
CLN6-219ENST00000637329 ADCY10Q96PN6 1610 aa23.51■■□□□ 1.35
CLN6-219ENST00000637329 ILDR1Q86SU0 546 aaPredicted RBP23.5■■□□□ 1.35
CLN6-219ENST00000637329 NCOA2Q15596 1464 aa23.49■■□□□ 1.35
CLN6-219ENST00000637329 CDK11AQ9UQ88 783 aaPredicted RBP23.49■■□□□ 1.35
CLN6-219ENST00000637329 ATP10BO94823 1461 aa23.48■■□□□ 1.35
CLN6-219ENST00000637329 TROQ12816 1431 aaPredicted RBP23.47■■□□□ 1.35
CLN6-219ENST00000637329 PHLDB1Q86UU1 1377 aa23.46■■□□□ 1.35
CLN6-219ENST00000637329 CCNB3Q8WWL7 1395 aa23.43■■□□□ 1.34
CLN6-219ENST00000637329 KDM5BQ9UGL1 1544 aa23.42■■□□□ 1.34
CLN6-219ENST00000637329 MYOM3Q5VTT5 1437 aa23.42■■□□□ 1.34
CLN6-219ENST00000637329 KIF14Q15058 1648 aa23.41■■□□□ 1.34
CLN6-219ENST00000637329 ZCCHC11Q5TAX3 1644 aaKnown RBP23.4■■□□□ 1.34
CLN6-219ENST00000637329 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.4■■□□□ 1.341e-10■■□□□ 12.6
CLN6-219ENST00000637329 FGD6Q6ZV73 1430 aa23.39■■□□□ 1.33
CLN6-219ENST00000637329 ITSN2Q9NZM3 1697 aa23.37■■□□□ 1.33
CLN6-219ENST00000637329 ARID3CA6NKF2 412 aa23.35■■□□□ 1.33
CLN6-219ENST00000637329 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.35■■□□□ 1.33
CLN6-219ENST00000637329 HNRNPUL2Q1KMD3 747 aaKnown RBP23.35■■□□□ 1.33
CLN6-219ENST00000637329 MIA2Q96PC5 1412 aa23.33■■□□□ 1.33
CLN6-219ENST00000637329 NPM1P06748 294 aaKnown RBP eCLIP23.33■■□□□ 1.33
CLN6-219ENST00000637329 TCOF1Q13428 1488 aaKnown RBP23.31■■□□□ 1.32
CLN6-219ENST00000637329 FAM69CQ0P6D2 419 aa23.31■■□□□ 1.32
CLN6-219ENST00000637329 PLEKHD1A6NEE1 506 aa23.3■■□□□ 1.32
CLN6-219ENST00000637329 PTPN23Q9H3S7 1636 aa23.3■■□□□ 1.32
CLN6-219ENST00000637329 KIF13AQ9H1H9 1805 aa23.29■■□□□ 1.32
CLN6-219ENST00000637329 ABCC10Q5T3U5 1492 aa23.28■■□□□ 1.32
CLN6-219ENST00000637329 KDM4FA0A1W2PPD8 638 aa23.27■■□□□ 1.32
CLN6-219ENST00000637329 CDC42BPAQ5VT25 1732 aa23.22■■□□□ 1.31
CLN6-219ENST00000637329 GPATCH8Q9UKJ3 1502 aaKnown RBP23.21■■□□□ 1.31
CLN6-219ENST00000637329 PREX2Q70Z35 1606 aa23.21■■□□□ 1.31
CLN6-219ENST00000637329 WDR7Q9Y4E6 1490 aa23.2■■□□□ 1.3
CLN6-219ENST00000637329 TTC37Q6PGP7 1564 aa23.18■■□□□ 1.3
CLN6-219ENST00000637329 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.17■■□□□ 1.33e-7■■■□□ 19.1
CLN6-219ENST00000637329 FAM50AQ14320 339 aaKnown RBP23.15■■□□□ 1.3
CLN6-219ENST00000637329 MYO5CQ9NQX4 1742 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms