RNA–Protein interactions for RNA: ENST00000637329.1

CLN6-219, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,204 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-219ENST00000637329 NISCHQ9Y2I1 1504 aa35.42■■■■□ 3.26
CLN6-219ENST00000637329 CCDC180Q9P1Z9 1646 aa31.15■■■□□ 2.58
CLN6-219ENST00000637329 ABCC9O60706 1549 aa30.1■■■□□ 2.41
CLN6-219ENST00000637329 ZCCHC6Q5VYS8 1495 aaKnown RBP29.77■■■□□ 2.36
CLN6-219ENST00000637329 DCAF1Q9Y4B6 1507 aa29.44■■■□□ 2.3
CLN6-219ENST00000637329 MYO15BQ96JP2 1530 aa29.2■■■□□ 2.26
CLN6-219ENST00000637329 NACADO15069 1562 aa28.97■■■□□ 2.23
CLN6-219ENST00000637329 DNAJC5BQ9UF47 199 aa28.93■■■□□ 2.22
CLN6-219ENST00000637329 DCAF8L2P0C7V8 631 aa28.91■■■□□ 2.22
CLN6-219ENST00000637329 RB1CC1Q8TDY2 1594 aa28.75■■■□□ 2.19
CLN6-219ENST00000637329 SHROOM4Q9ULL8 1493 aa28.45■■■□□ 2.14
CLN6-219ENST00000637329 SCRIBQ14160 1630 aa28.4■■■□□ 2.14
CLN6-219ENST00000637329 UNC13AQ9UPW8 1703 aa28.09■■■□□ 2.09
CLN6-219ENST00000637329 PABPN1Q86U42 306 aaKnown RBP eCLIP27.95■■■□□ 2.06
CLN6-219ENST00000637329 BICRAQ9NZM4 1560 aa27.82■■■□□ 2.04
CLN6-219ENST00000637329 BAZ1AQ9NRL2 1556 aaPredicted RBP27.42■■□□□ 1.98
CLN6-219ENST00000637329 CECR2Q9BXF3 1484 aa27.39■■□□□ 1.98
CLN6-219ENST00000637329 DNAJC5Q9H3Z4 198 aa27.34■■□□□ 1.97
CLN6-219ENST00000637329 RSF1Q96T23 1441 aaPredicted RBP27.33■■□□□ 1.96
CLN6-219ENST00000637329 SMARCA4P51532 1647 aa27.3■■□□□ 1.96
CLN6-219ENST00000637329 MROH2BQ7Z745 1585 aa27.28■■□□□ 1.96
CLN6-219ENST00000637329 SUPT5HO00267 1087 aaKnown RBP27.25■■□□□ 1.95
CLN6-219ENST00000637329 CC2D2AQ9P2K1 1620 aa27.12■■□□□ 1.93
CLN6-219ENST00000637329 PEG3Q9GZU2 1588 aa27.06■■□□□ 1.92
CLN6-219ENST00000637329 WIZO95785 1651 aa27.04■■□□□ 1.92
CLN6-219ENST00000637329 EIF4G1Q04637 1599 aaKnown RBP27.01■■□□□ 1.92
CLN6-219ENST00000637329 SMARCA2P51531 1590 aa26.92■■□□□ 1.9
CLN6-219ENST00000637329 TOP2AP11388 1531 aaKnown RBP26.89■■□□□ 1.89
CLN6-219ENST00000637329 ATAD2BQ9ULI0 1458 aa26.83■■□□□ 1.89
CLN6-219ENST00000637329 HMGXB3Q12766 1538 aa26.74■■□□□ 1.87
CLN6-219ENST00000637329 BAZ1BQ9UIG0 1483 aaKnown RBP26.69■■□□□ 1.86
CLN6-219ENST00000637329 NCAPD3P42695 1498 aa26.68■■□□□ 1.86
CLN6-219ENST00000637329 CCDC88BA6NC98 1476 aa26.47■■□□□ 1.83
CLN6-219ENST00000637329 CUX2O14529 1486 aa26.35■■□□□ 1.81
CLN6-219ENST00000637329 ERCC6Q03468 1493 aa26.17■■□□□ 1.78
CLN6-219ENST00000637329 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
CLN6-219ENST00000637329 CFTRP13569 1480 aa26.03■■□□□ 1.76
CLN6-219ENST00000637329 PRDM2Q13029 1718 aa26.02■■□□□ 1.76
CLN6-219ENST00000637329 CADPSQ9ULU8 1353 aa25.92■■□□□ 1.74
CLN6-219ENST00000637329 LAMC3Q9Y6N6 1575 aa25.87■■□□□ 1.73
CLN6-219ENST00000637329 TRIM41Q8WV44 630 aa25.85■■□□□ 1.73
CLN6-219ENST00000637329 ABCC8Q09428 1581 aa25.82■■□□□ 1.72
CLN6-219ENST00000637329 WRNQ14191 1432 aaPredicted RBP eCLIP25.76■■□□□ 1.711e-9■■■■■ 46
CLN6-219ENST00000637329 SYNJ1O43426 1573 aa25.67■■□□□ 1.7
CLN6-219ENST00000637329 BIVM-ERCC5R4GMW8 1640 aa25.66■■□□□ 1.7
CLN6-219ENST00000637329 NESP48681 1621 aa25.66■■□□□ 1.7
CLN6-219ENST00000637329 TOP2BQ02880 1626 aa25.66■■□□□ 1.7
CLN6-219ENST00000637329 FANCD2Q9BXW9 1451 aa25.65■■□□□ 1.7
CLN6-219ENST00000637329 PDS5BQ9NTI5 1447 aa25.6■■□□□ 1.69
CLN6-219ENST00000637329 CEP164Q9UPV0 1460 aa25.55■■□□□ 1.68
CLN6-219ENST00000637329 CUX1P39880 1505 aa25.55■■□□□ 1.68
CLN6-219ENST00000637329 DNMBPQ6XZF7 1577 aa25.48■■□□□ 1.67
CLN6-219ENST00000637329 KIF21AQ7Z4S6 1674 aa25.47■■□□□ 1.67
CLN6-219ENST00000637329 THOC2Q8NI27 1593 aaKnown RBP25.42■■□□□ 1.66
CLN6-219ENST00000637329 EEA1Q15075 1411 aa25.41■■□□□ 1.66
CLN6-219ENST00000637329 TOPBP1Q92547 1522 aa25.37■■□□□ 1.65
CLN6-219ENST00000637329 URB2Q14146 1524 aaKnown RBP25.32■■□□□ 1.64
CLN6-219ENST00000637329 FGD5Q6ZNL6 1462 aa25.3■■□□□ 1.64
CLN6-219ENST00000637329 MRC2Q9UBG0 1479 aa25.3■■□□□ 1.64
CLN6-219ENST00000637329 SOGA1O94964 1423 aa25.27■■□□□ 1.64
CLN6-219ENST00000637329 POLA1P09884 1462 aaPredicted RBP25.22■■□□□ 1.63
CLN6-219ENST00000637329 WDR62O43379 1518 aa25.22■■□□□ 1.63
CLN6-219ENST00000637329 KIF27Q86VH2 1401 aa25.14■■□□□ 1.62
CLN6-219ENST00000637329 RUSC2Q8N2Y8 1516 aa25.14■■□□□ 1.62
CLN6-219ENST00000637329 ABCA10Q8WWZ4 1543 aa25.14■■□□□ 1.62
CLN6-219ENST00000637329 OSCARQ8IYS5 282 aa25.14■■□□□ 1.62
CLN6-219ENST00000637329 WDR97A6NE52 1622 aa25.14■■□□□ 1.61
CLN6-219ENST00000637329 FAM9AQ8IZU1 332 aaPredicted RBP25.1■■□□□ 1.61
CLN6-219ENST00000637329 KIF21BO75037 1637 aa25.08■■□□□ 1.61
CLN6-219ENST00000637329 CSRNP3Q8WYN3 585 aa25.05■■□□□ 1.6
CLN6-219ENST00000637329 TARBP1Q13395 1621 aaKnown RBP25.04■■□□□ 1.6
CLN6-219ENST00000637329 RAD54L2Q9Y4B4 1467 aa25.02■■□□□ 1.6
CLN6-219ENST00000637329 ABCA5Q8WWZ7 1642 aa24.99■■□□□ 1.59
CLN6-219ENST00000637329 GOLGA3Q08378 1498 aa24.98■■□□□ 1.59
CLN6-219ENST00000637329 IFT140Q96RY7 1462 aa24.97■■□□□ 1.59
CLN6-219ENST00000637329 ERICH3Q5RHP9 1530 aa24.96■■□□□ 1.59
CLN6-219ENST00000637329 PRXQ9BXM0 1461 aa24.94■■□□□ 1.58
CLN6-219ENST00000637329 LOC105371045A0A1W2PR82 267 aa24.91■■□□□ 1.58
CLN6-219ENST00000637329 CUL7Q14999 1698 aa24.89■■□□□ 1.58
CLN6-219ENST00000637329 GAPVD1Q14C86 1478 aa24.84■■□□□ 1.57
CLN6-219ENST00000637329 IGF1RP08069 1367 aa24.84■■□□□ 1.57
CLN6-219ENST00000637329 RAPGEF2Q9Y4G8 1499 aa24.82■■□□□ 1.56
CLN6-219ENST00000637329 TNIKQ9UKE5 1360 aa24.8■■□□□ 1.56
CLN6-219ENST00000637329 PBRM1Q86U86 1689 aa24.8■■□□□ 1.56
CLN6-219ENST00000637329 TDRD9Q8NDG6 1382 aaKnown RBP24.77■■□□□ 1.56
CLN6-219ENST00000637329 EIF4G3O43432 1585 aaKnown RBP24.76■■□□□ 1.55
CLN6-219ENST00000637329 CARMIL1Q5VZK9 1371 aa24.73■■□□□ 1.55
CLN6-219ENST00000637329 GRIN2BQ13224 1484 aa24.72■■□□□ 1.55
CLN6-219ENST00000637329 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
CLN6-219ENST00000637329 RIMBP3CA6NJZ7 1639 aa24.68■■□□□ 1.54
CLN6-219ENST00000637329 RIMBP3BA6NNM3 1639 aa24.68■■□□□ 1.54
CLN6-219ENST00000637329 RIMBP3Q9UFD9 1639 aa24.68■■□□□ 1.54
CLN6-219ENST00000637329 ADAMTS12P58397 1594 aa24.67■■□□□ 1.54
CLN6-219ENST00000637329 TRHP20396 242 aaPredicted RBP24.67■■□□□ 1.54
CLN6-219ENST00000637329 AQRO60306 1485 aaKnown RBP eCLIP24.66■■□□□ 1.542e-7■■■■□ 23.4
CLN6-219ENST00000637329 AEBP2Q6ZN18 517 aaPredicted RBP24.66■■□□□ 1.54
CLN6-219ENST00000637329 CEP162Q5TB80 1403 aa24.65■■□□□ 1.54
CLN6-219ENST00000637329 EHMT2Q96KQ7 1210 aa24.65■■□□□ 1.54
CLN6-219ENST00000637329 UBTFP17480 764 aaKnown RBP24.64■■□□□ 1.54
CLN6-219ENST00000637329 FHAD1B1AJZ9 1412 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms