RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 GAPVD1Q14C86 1478 aa6.05□□□□□ -1.44
SCN1A-214ENST00000637038 CUX1P39880 1505 aa6.05□□□□□ -1.44
SCN1A-214ENST00000637038 ERICH3Q5RHP9 1530 aa6.05□□□□□ -1.44
SCN1A-214ENST00000637038 CFTRP13569 1480 aa6.04□□□□□ -1.44
SCN1A-214ENST00000637038 PRXQ9BXM0 1461 aa6.04□□□□□ -1.44
SCN1A-214ENST00000637038 PHLDB1Q86UU1 1377 aa6.04□□□□□ -1.44
SCN1A-214ENST00000637038 KDM6BO15054 1643 aa6.02□□□□□ -1.45
SCN1A-214ENST00000637038 CCER1Q8TC90 406 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-214ENST00000637038 GOLGA3Q08378 1498 aa6.02□□□□□ -1.45
SCN1A-214ENST00000637038 GRIN2BQ13224 1484 aa6.02□□□□□ -1.45
SCN1A-214ENST00000637038 RAPGEF2Q9Y4G8 1499 aa6.02□□□□□ -1.45
SCN1A-214ENST00000637038 EHMT2Q96KQ7 1210 aa6.02□□□□□ -1.45
SCN1A-214ENST00000637038 SYNJ2O15056 1496 aa6□□□□□ -1.45
SCN1A-214ENST00000637038 CENPBP07199 599 aaPredicted RBP6□□□□□ -1.45
SCN1A-214ENST00000637038 POGZQ7Z3K3 1410 aa5.99□□□□□ -1.45
SCN1A-214ENST00000637038 DNMBPQ6XZF7 1577 aa5.99□□□□□ -1.45
SCN1A-214ENST00000637038 ZNF608Q9ULD9 1512 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-214ENST00000637038 IQSEC2Q5JU85 1478 aa5.99□□□□□ -1.45
SCN1A-214ENST00000637038 FAM69CQ0P6D2 419 aa5.99□□□□□ -1.45
SCN1A-214ENST00000637038 CFAP43Q8NDM7 1665 aa5.99□□□□□ -1.45
SCN1A-214ENST00000637038 CLIP1P30622 1438 aa5.99□□□□□ -1.45
SCN1A-214ENST00000637038 SCAF1Q9H7N4 1312 aaKnown RBP5.98□□□□□ -1.45
SCN1A-214ENST00000637038 PLB1Q6P1J6 1458 aa5.98□□□□□ -1.45
SCN1A-214ENST00000637038 KIAA0586Q9BVV6 1533 aa5.97□□□□□ -1.45
SCN1A-214ENST00000637038 ABCC10Q5T3U5 1492 aa5.96□□□□□ -1.45
SCN1A-214ENST00000637038 VPS8Q8N3P4 1428 aa5.96□□□□□ -1.46
SCN1A-214ENST00000637038 PPP6R1Q9UPN7 881 aa5.96□□□□□ -1.46
SCN1A-214ENST00000637038 CLASP1Q7Z460 1538 aa5.95□□□□□ -1.46
SCN1A-214ENST00000637038 MAPKBP1O60336 1514 aa5.95□□□□□ -1.46
SCN1A-214ENST00000637038 UBTFP17480 764 aaKnown RBP5.95□□□□□ -1.46
SCN1A-214ENST00000637038 EIF4G3O43432 1585 aaKnown RBP5.94□□□□□ -1.46
SCN1A-214ENST00000637038 TOPBP1Q92547 1522 aa5.93□□□□□ -1.46
SCN1A-214ENST00000637038 CARMIL2Q6F5E8 1435 aa5.93□□□□□ -1.46
SCN1A-214ENST00000637038 RRBP1Q9P2E9 1410 aaKnown RBP5.93□□□□□ -1.46
SCN1A-214ENST00000637038 CSRNP3Q8WYN3 585 aa5.93□□□□□ -1.46
SCN1A-214ENST00000637038 CTTNBP2Q8WZ74 1663 aa5.93□□□□□ -1.46
SCN1A-214ENST00000637038 MAP3K1Q13233 1512 aa5.92□□□□□ -1.46
SCN1A-214ENST00000637038 POTEDQ86YR6 584 aa5.92□□□□□ -1.46
SCN1A-214ENST00000637038 CERKQ8TCT0 537 aa5.92□□□□□ -1.46
SCN1A-214ENST00000637038 DAXXQ9UER7 740 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-214ENST00000637038 ARHGAP35Q9NRY4 1499 aa5.92□□□□□ -1.46
SCN1A-214ENST00000637038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-214ENST00000637038 URB2Q14146 1524 aaKnown RBP5.92□□□□□ -1.46
SCN1A-214ENST00000637038 ADGRL1O94910 1474 aa5.92□□□□□ -1.46
SCN1A-214ENST00000637038 CHD1O14646 1710 aa5.91□□□□□ -1.46
SCN1A-214ENST00000637038 ADRA2BP18089 450 aa5.91□□□□□ -1.46
SCN1A-214ENST00000637038 SPATA31D1Q6ZQQ2 1576 aa5.91□□□□□ -1.46
SCN1A-214ENST00000637038 DIEXFQ68CQ4 756 aaKnown RBP5.9□□□□□ -1.47
SCN1A-214ENST00000637038 HECW2Q9P2P5 1572 aa5.9□□□□□ -1.47
SCN1A-214ENST00000637038 KDM5BQ9UGL1 1544 aa5.9□□□□□ -1.47
SCN1A-214ENST00000637038 ERICH6Q7L0X2 663 aa5.89□□□□□ -1.47
SCN1A-214ENST00000637038 TIAM1Q13009 1591 aa5.89□□□□□ -1.47
SCN1A-214ENST00000637038 ABCA5Q8WWZ7 1642 aa5.89□□□□□ -1.47
SCN1A-214ENST00000637038 SAMD9Q5K651 1589 aa5.88□□□□□ -1.47
SCN1A-214ENST00000637038 ACIN1Q9UKV3 1341 aaKnown RBP5.88□□□□□ -1.47
SCN1A-214ENST00000637038 SNAPC4Q5SXM2 1469 aa5.88□□□□□ -1.47
SCN1A-214ENST00000637038 PCF11O94913 1555 aaKnown RBP5.87□□□□□ -1.47
SCN1A-214ENST00000637038 GLI2P10070 1586 aa5.87□□□□□ -1.47
SCN1A-214ENST00000637038 DCAF8L1A6NGE4 600 aa5.87□□□□□ -1.47
SCN1A-214ENST00000637038 ESF1Q9H501 851 aaKnown RBP5.86□□□□□ -1.47
SCN1A-214ENST00000637038 ZNF316A6NFI3 1004 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-214ENST00000637038 FHAD1B1AJZ9 1412 aa5.85□□□□□ -1.47
SCN1A-214ENST00000637038 DHX57Q6P158 1386 aaKnown RBP5.85□□□□□ -1.47
SCN1A-214ENST00000637038 KDM4FA0A1W2PPD8 638 aa5.85□□□□□ -1.47
SCN1A-214ENST00000637038 PIAS4Q8N2W9 510 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-214ENST00000637038 NEUROD1Q13562 356 aa5.84□□□□□ -1.47
SCN1A-214ENST00000637038 TARBP1Q13395 1621 aaKnown RBP5.84□□□□□ -1.47
SCN1A-214ENST00000637038 CUL7Q14999 1698 aa5.84□□□□□ -1.48
SCN1A-214ENST00000637038 DENND4BO75064 1496 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-214ENST00000637038 ABCA10Q8WWZ4 1543 aa5.82□□□□□ -1.48
SCN1A-214ENST00000637038 IGF1RP08069 1367 aa5.82□□□□□ -1.48
SCN1A-214ENST00000637038 FGD5Q6ZNL6 1462 aa5.81□□□□□ -1.48
SCN1A-214ENST00000637038 POLR1AO95602 1720 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-214ENST00000637038 PBRM1Q86U86 1689 aa5.8□□□□□ -1.48
SCN1A-214ENST00000637038 NUP160Q12769 1436 aa5.8□□□□□ -1.48
SCN1A-214ENST00000637038 AQRO60306 1485 aaKnown RBP eCLIP5.8□□□□□ -1.48
SCN1A-214ENST00000637038 GCC2Q8IWJ2 1684 aa5.8□□□□□ -1.48
SCN1A-214ENST00000637038 MAGI3Q5TCQ9 1506 aa5.8□□□□□ -1.48
SCN1A-214ENST00000637038 PTPRTO14522 1441 aa5.8□□□□□ -1.48
SCN1A-214ENST00000637038 GRIN2AQ12879 1464 aa5.8□□□□□ -1.48
SCN1A-214ENST00000637038 HNRNPUL2Q1KMD3 747 aaKnown RBP5.8□□□□□ -1.48
SCN1A-214ENST00000637038 KANK4Q5T7N3 995 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-214ENST00000637038 CLSPNQ9HAW4 1339 aa5.8□□□□□ -1.48
SCN1A-214ENST00000637038 TOM1O60784 492 aa5.79□□□□□ -1.48
SCN1A-214ENST00000637038 BCL11AQ9H165 835 aa5.79□□□□□ -1.48
SCN1A-214ENST00000637038 GTF3C3Q9Y5Q9 886 aa5.79□□□□□ -1.48
SCN1A-214ENST00000637038 DIP2BQ9P265 1576 aa5.79□□□□□ -1.48
SCN1A-214ENST00000637038 LRRC9Q6ZRR7 1453 aa5.79□□□□□ -1.48
SCN1A-214ENST00000637038 ARID4BQ4LE39 1312 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-214ENST00000637038 JPH4Q96JJ6 628 aa5.78□□□□□ -1.48
SCN1A-214ENST00000637038 PRG4Q92954 1404 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-214ENST00000637038 POLA1P09884 1462 aaPredicted RBP5.78□□□□□ -1.48
SCN1A-214ENST00000637038 FANCAO15360 1455 aa5.78□□□□□ -1.48
SCN1A-214ENST00000637038 CEP170Q5SW79 1584 aa5.78□□□□□ -1.48
SCN1A-214ENST00000637038 PTPRGP23470 1445 aa5.77□□□□□ -1.49
SCN1A-214ENST00000637038 EFCAB5A4FU69 1503 aa5.77□□□□□ -1.49
SCN1A-214ENST00000637038 UHRF1BP1LA0JNW5 1464 aa5.77□□□□□ -1.49
SCN1A-214ENST00000637038 KIF27Q86VH2 1401 aa5.77□□□□□ -1.49
SCN1A-214ENST00000637038 AKNAQ7Z591 1439 aa5.76□□□□□ -1.49
SCN1A-214ENST00000637038 FYCO1Q9BQS8 1478 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms