RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 NISCHQ9Y2I1 1504 aa8.34□□□□□ -1.07
SCN1A-214ENST00000637038 AEBP2Q6ZN18 517 aaPredicted RBP7.88□□□□□ -1.15
SCN1A-214ENST00000637038 CHIC1Q5VXU3 224 aa7.63□□□□□ -1.19
SCN1A-214ENST00000637038 ABCC9O60706 1549 aa7.49□□□□□ -1.21
SCN1A-214ENST00000637038 CCDC180Q9P1Z9 1646 aa7.42□□□□□ -1.22
SCN1A-214ENST00000637038 DNAJC5Q9H3Z4 198 aa7.37□□□□□ -1.23
SCN1A-214ENST00000637038 RB1CC1Q8TDY2 1594 aa7.33□□□□□ -1.24
SCN1A-214ENST00000637038 SHROOM4Q9ULL8 1493 aa7.31□□□□□ -1.24
SCN1A-214ENST00000637038 NACADO15069 1562 aa7.19□□□□□ -1.26
SCN1A-214ENST00000637038 ZCCHC6Q5VYS8 1495 aaKnown RBP7.13□□□□□ -1.27
SCN1A-214ENST00000637038 CUX2O14529 1486 aa7.1□□□□□ -1.27
SCN1A-214ENST00000637038 MYO15BQ96JP2 1530 aa7.02□□□□□ -1.29
SCN1A-214ENST00000637038 DNAJC5BQ9UF47 199 aa7.02□□□□□ -1.29
SCN1A-214ENST00000637038 CECR2Q9BXF3 1484 aa6.98□□□□□ -1.29
SCN1A-214ENST00000637038 DCAF1Q9Y4B6 1507 aa6.97□□□□□ -1.29
SCN1A-214ENST00000637038 PABPN1Q86U42 306 aaKnown RBP eCLIP6.96□□□□□ -1.3
SCN1A-214ENST00000637038 ERCC6Q03468 1493 aa6.86□□□□□ -1.31
SCN1A-214ENST00000637038 PHF23Q9BUL5 403 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-214ENST00000637038 TRIM41Q8WV44 630 aa6.77□□□□□ -1.33
SCN1A-214ENST00000637038 CC2D2AQ9P2K1 1620 aa6.77□□□□□ -1.33
SCN1A-214ENST00000637038 DCAF8L2P0C7V8 631 aa6.76□□□□□ -1.33
SCN1A-214ENST00000637038 EIF4G1Q04637 1599 aaKnown RBP6.7□□□□□ -1.34
SCN1A-214ENST00000637038 OSCARQ8IYS5 282 aa6.65□□□□□ -1.34
SCN1A-214ENST00000637038 PDS5BQ9NTI5 1447 aa6.64□□□□□ -1.35
SCN1A-214ENST00000637038 UNC13AQ9UPW8 1703 aa6.64□□□□□ -1.35
SCN1A-214ENST00000637038 SUPT5HO00267 1087 aaKnown RBP6.63□□□□□ -1.35
SCN1A-214ENST00000637038 BICRAQ9NZM4 1560 aa6.6□□□□□ -1.35
SCN1A-214ENST00000637038 RSF1Q96T23 1441 aaPredicted RBP6.56□□□□□ -1.36
SCN1A-214ENST00000637038 SCRIBQ14160 1630 aa6.55□□□□□ -1.36
SCN1A-214ENST00000637038 TRHP20396 242 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-214ENST00000637038 SMARCA2P51531 1590 aa6.54□□□□□ -1.36
SCN1A-214ENST00000637038 LAMC3Q9Y6N6 1575 aa6.52□□□□□ -1.37
SCN1A-214ENST00000637038 NCAPD3P42695 1498 aa6.51□□□□□ -1.37
SCN1A-214ENST00000637038 WIZO95785 1651 aa6.51□□□□□ -1.37
SCN1A-214ENST00000637038 BAZ1AQ9NRL2 1556 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-214ENST00000637038 MROH2BQ7Z745 1585 aa6.49□□□□□ -1.37
SCN1A-214ENST00000637038 HMGXB3Q12766 1538 aa6.48□□□□□ -1.37
SCN1A-214ENST00000637038 BAZ1BQ9UIG0 1483 aaKnown RBP6.47□□□□□ -1.37
SCN1A-214ENST00000637038 SENP3Q9H4L4 574 aaPredicted RBP6.45□□□□□ -1.38
SCN1A-214ENST00000637038 MRC2Q9UBG0 1479 aa6.45□□□□□ -1.38
SCN1A-214ENST00000637038 HRCP23327 699 aa6.42□□□□□ -1.38
SCN1A-214ENST00000637038 PEG3Q9GZU2 1588 aa6.4□□□□□ -1.38
SCN1A-214ENST00000637038 SMARCA4P51532 1647 aa6.39□□□□□ -1.39
SCN1A-214ENST00000637038 ABCC8Q09428 1581 aa6.38□□□□□ -1.39
SCN1A-214ENST00000637038 TOP2AP11388 1531 aaKnown RBP6.36□□□□□ -1.39
SCN1A-214ENST00000637038 NPM1P06748 294 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCN1A-214ENST00000637038 FAM9AQ8IZU1 332 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-214ENST00000637038 CEP164Q9UPV0 1460 aa6.33□□□□□ -1.4
SCN1A-214ENST00000637038 PCGF6Q9BYE7 350 aa6.33□□□□□ -1.4
SCN1A-214ENST00000637038 THOC2Q8NI27 1593 aaKnown RBP6.33□□□□□ -1.4
SCN1A-214ENST00000637038 ERCC6L2Q5T890 1561 aa6.33□□□□□ -1.4
SCN1A-214ENST00000637038 LOC105371045A0A1W2PR82 267 aa6.32□□□□□ -1.4
SCN1A-214ENST00000637038 FBXO41Q8TF61 875 aa6.31□□□□□ -1.4
SCN1A-214ENST00000637038 WDR62O43379 1518 aa6.31□□□□□ -1.4
SCN1A-214ENST00000637038 CADPSQ9ULU8 1353 aa6.3□□□□□ -1.4
SCN1A-214ENST00000637038 IFT140Q96RY7 1462 aa6.3□□□□□ -1.4
SCN1A-214ENST00000637038 FOXD1Q16676 465 aa6.29□□□□□ -1.4
SCN1A-214ENST00000637038 ATAD2BQ9ULI0 1458 aa6.29□□□□□ -1.4
SCN1A-214ENST00000637038 ZEB1P37275 1124 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-214ENST00000637038 SLC24A1O60721 1099 aa6.28□□□□□ -1.4
SCN1A-214ENST00000637038 PELP1Q8IZL8 1130 aaKnown RBP6.27□□□□□ -1.41
SCN1A-214ENST00000637038 CCDC88BA6NC98 1476 aa6.27□□□□□ -1.41
SCN1A-214ENST00000637038 TRIM26Q12899 539 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-214ENST00000637038 WDR97A6NE52 1622 aa6.27□□□□□ -1.41
SCN1A-214ENST00000637038 PPARGC1BQ86YN6 1023 aaKnown RBP6.27□□□□□ -1.41
SCN1A-214ENST00000637038 ARHGEF11O15085 1522 aa6.26□□□□□ -1.41
SCN1A-214ENST00000637038 RIMBP3CA6NJZ7 1639 aa6.26□□□□□ -1.41
SCN1A-214ENST00000637038 RIMBP3BA6NNM3 1639 aa6.26□□□□□ -1.41
SCN1A-214ENST00000637038 RIMBP3Q9UFD9 1639 aa6.26□□□□□ -1.41
SCN1A-214ENST00000637038 CYB5RLQ6IPT4 315 aa6.26□□□□□ -1.41
SCN1A-214ENST00000637038 ILDR1Q86SU0 546 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-214ENST00000637038 WRNQ14191 1432 aaPredicted RBP eCLIP6.24□□□□□ -1.41
SCN1A-214ENST00000637038 SYNJ1O43426 1573 aa6.23□□□□□ -1.41
SCN1A-214ENST00000637038 MYT1Q01538 1121 aa6.22□□□□□ -1.41
SCN1A-214ENST00000637038 PRDM2Q13029 1718 aa6.22□□□□□ -1.41
SCN1A-214ENST00000637038 BIVM-ERCC5R4GMW8 1640 aa6.22□□□□□ -1.41
SCN1A-214ENST00000637038 SOCS7O14512 581 aa6.21□□□□□ -1.42
SCN1A-214ENST00000637038 KIF21BO75037 1637 aa6.21□□□□□ -1.42
SCN1A-214ENST00000637038 RUSC2Q8N2Y8 1516 aa6.2□□□□□ -1.42
SCN1A-214ENST00000637038 PRKCSHP14314 528 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-214ENST00000637038 PLPPR3Q6T4P5 718 aa6.2□□□□□ -1.42
SCN1A-214ENST00000637038 LMTK3Q96Q04 1460 aa6.19□□□□□ -1.42
SCN1A-214ENST00000637038 CHMP7Q8WUX9 453 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-214ENST00000637038 TOP2BQ02880 1626 aa6.16□□□□□ -1.42
SCN1A-214ENST00000637038 FANCD2Q9BXW9 1451 aa6.15□□□□□ -1.42
SCN1A-214ENST00000637038 SOGA1O94964 1423 aa6.15□□□□□ -1.42
SCN1A-214ENST00000637038 DMRT2Q9Y5R5 561 aa6.15□□□□□ -1.42
SCN1A-214ENST00000637038 TTBK1Q5TCY1 1321 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-214ENST00000637038 NESP48681 1621 aa6.11□□□□□ -1.43
SCN1A-214ENST00000637038 MAGI1Q96QZ7 1491 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-214ENST00000637038 KIF21AQ7Z4S6 1674 aa6.1□□□□□ -1.43
SCN1A-214ENST00000637038 FBLN2P98095 1184 aa6.1□□□□□ -1.43
SCN1A-214ENST00000637038 APLP2Q06481 763 aa6.09□□□□□ -1.43
SCN1A-214ENST00000637038 ARAP1Q96P48 1450 aa6.09□□□□□ -1.43
SCN1A-214ENST00000637038 TEX14Q8IWB6 1497 aa6.09□□□□□ -1.44
SCN1A-214ENST00000637038 TNIKQ9UKE5 1360 aa6.08□□□□□ -1.44
SCN1A-214ENST00000637038 CEP162Q5TB80 1403 aa6.08□□□□□ -1.44
SCN1A-214ENST00000637038 EEA1Q15075 1411 aa6.06□□□□□ -1.44
SCN1A-214ENST00000637038 DISP3Q9P2K9 1392 aa6.06□□□□□ -1.44
SCN1A-214ENST00000637038 LRRIQ1Q96JM4 1722 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms