RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 SHROOM2Q13796 1616 aa13.98□□□□□ -0.17
CLK1-215ENST00000621181 ERICH3Q5RHP9 1530 aa13.98□□□□□ -0.17
CLK1-215ENST00000621181 PRG4Q92954 1404 aaPredicted RBP13.94□□□□□ -0.18
CLK1-215ENST00000621181 JPH4Q96JJ6 628 aa13.92□□□□□ -0.18
CLK1-215ENST00000621181 KIF13AQ9H1H9 1805 aa13.89□□□□□ -0.19
CLK1-215ENST00000621181 NPM1P06748 294 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLK1-215ENST00000621181 RUSC2Q8N2Y8 1516 aa13.86□□□□□ -0.19
CLK1-215ENST00000621181 FAM69CQ0P6D2 419 aa13.85□□□□□ -0.19
CLK1-215ENST00000621181 PPP6R1Q9UPN7 881 aa13.83□□□□□ -0.2
CLK1-215ENST00000621181 ABCC10Q5T3U5 1492 aa13.82□□□□□ -0.2
CLK1-215ENST00000621181 ADRA2BP18089 450 aa13.8□□□□□ -0.2
CLK1-215ENST00000621181 MAPKBP1O60336 1514 aa13.8□□□□□ -0.2
CLK1-215ENST00000621181 ADCY10Q96PN6 1610 aa13.79□□□□□ -0.2
CLK1-215ENST00000621181 KIAA0586Q9BVV6 1533 aa13.78□□□□□ -0.2
CLK1-215ENST00000621181 DIP2BQ9P265 1576 aa13.77□□□□□ -0.2
CLK1-215ENST00000621181 KIF27Q86VH2 1401 aa13.76□□□□□ -0.21
CLK1-215ENST00000621181 IGF1RP08069 1367 aa13.76□□□□□ -0.21
CLK1-215ENST00000621181 CUL7Q14999 1698 aa13.75□□□□□ -0.21
CLK1-215ENST00000621181 TTBK1Q5TCY1 1321 aaPredicted RBP13.72□□□□□ -0.21
CLK1-215ENST00000621181 KDM6BO15054 1643 aa13.72□□□□□ -0.21
CLK1-215ENST00000621181 TSPOAP1O95153 1857 aa13.72□□□□□ -0.21
CLK1-215ENST00000621181 PTPRGP23470 1445 aa13.71□□□□□ -0.21
CLK1-215ENST00000621181 CARMIL1Q5VZK9 1371 aa13.68□□□□□ -0.22
CLK1-215ENST00000621181 CARMIL2Q6F5E8 1435 aa13.68□□□□□ -0.22
CLK1-215ENST00000621181 TNIKQ9UKE5 1360 aa13.66□□□□□ -0.22
CLK1-215ENST00000621181 KDM4FA0A1W2PPD8 638 aa13.65□□□□□ -0.22
CLK1-215ENST00000621181 ABCC2Q92887 1545 aa13.64□□□□□ -0.23
CLK1-215ENST00000621181 IQGAP2Q13576 1575 aa13.63□□□□□ -0.23
CLK1-215ENST00000621181 ASXL2Q76L83 1435 aa13.63□□□□□ -0.23
CLK1-215ENST00000621181 PLB1Q6P1J6 1458 aa13.61□□□□□ -0.23
CLK1-215ENST00000621181 UACAQ9BZF9 1416 aa13.58□□□□□ -0.23
CLK1-215ENST00000621181 UHRF1BP1LA0JNW5 1464 aa13.58□□□□□ -0.24
CLK1-215ENST00000621181 GLI2P10070 1586 aa13.57□□□□□ -0.24
CLK1-215ENST00000621181 DISP1Q96F81 1524 aa13.56□□□□□ -0.24
CLK1-215ENST00000621181 PPRC1Q5VV67 1664 aaKnown RBP13.55□□□□□ -0.24
CLK1-215ENST00000621181 RAPGEF2Q9Y4G8 1499 aa13.53□□□□□ -0.24
CLK1-215ENST00000621181 KDM5BQ9UGL1 1544 aa13.53□□□□□ -0.24
CLK1-215ENST00000621181 EPRSP07814 1512 aaKnown RBP13.52□□□□□ -0.24
CLK1-215ENST00000621181 PIAS4Q8N2W9 510 aaPredicted RBP13.52□□□□□ -0.25
CLK1-215ENST00000621181 UGGT2Q9NYU1 1516 aa13.52□□□□□ -0.25
CLK1-215ENST00000621181 ADGRL1O94910 1474 aa13.51□□□□□ -0.25
CLK1-215ENST00000621181 TEX14Q8IWB6 1497 aa13.51□□□□□ -0.25
CLK1-215ENST00000621181 KIAA0556O60303 1618 aa13.5□□□□□ -0.25
CLK1-215ENST00000621181 ZCCHC11Q5TAX3 1644 aaKnown RBP13.5□□□□□ -0.25
CLK1-215ENST00000621181 MAP3K4Q9Y6R4 1608 aa13.5□□□□□ -0.25
CLK1-215ENST00000621181 COL17A1Q9UMD9 1497 aaPredicted RBP13.49□□□□□ -0.25
CLK1-215ENST00000621181 WDR7Q9Y4E6 1490 aa13.46□□□□□ -0.25
CLK1-215ENST00000621181 ILDR1Q86SU0 546 aaPredicted RBP13.43□□□□□ -0.26
CLK1-215ENST00000621181 CTTNBP2Q8WZ74 1663 aa13.42□□□□□ -0.26
CLK1-215ENST00000621181 GOLGA3Q08378 1498 aa13.42□□□□□ -0.26
CLK1-215ENST00000621181 KCNH8Q96L42 1107 aa13.41□□□□□ -0.26
CLK1-215ENST00000621181 CD109Q6YHK3 1445 aa13.4□□□□□ -0.26
CLK1-215ENST00000621181 HECW2Q9P2P5 1572 aa13.38□□□□□ -0.27
CLK1-215ENST00000621181 CFAP43Q8NDM7 1665 aa13.38□□□□□ -0.27
CLK1-215ENST00000621181 MAGI3Q5TCQ9 1506 aa13.38□□□□□ -0.27
CLK1-215ENST00000621181 ABCA8O94911 1581 aa13.38□□□□□ -0.27
CLK1-215ENST00000621181 FAM9AQ8IZU1 332 aaPredicted RBP13.36□□□□□ -0.27
CLK1-215ENST00000621181 ARID3CA6NKF2 412 aa13.34□□□□□ -0.27
CLK1-215ENST00000621181 PRXQ9BXM0 1461 aa13.33□□□□□ -0.27
CLK1-215ENST00000621181 P3H3Q8IVL6 736 aa13.31□□□□□ -0.28
CLK1-215ENST00000621181 KIF21BO75037 1637 aa13.3□□□□□ -0.28
CLK1-215ENST00000621181 ARAP3Q8WWN8 1544 aa13.28□□□□□ -0.28
CLK1-215ENST00000621181 ATP10BO94823 1461 aa13.27□□□□□ -0.28
CLK1-215ENST00000621181 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.26□□□□□ -0.29
CLK1-215ENST00000621181 HNRNPUL2Q1KMD3 747 aaKnown RBP13.26□□□□□ -0.29
CLK1-215ENST00000621181 PHLDB1Q86UU1 1377 aa13.24□□□□□ -0.29
CLK1-215ENST00000621181 ABCA9Q8IUA7 1624 aa13.24□□□□□ -0.29
CLK1-215ENST00000621181 RAPGEF3O95398 923 aa13.23□□□□□ -0.29
CLK1-215ENST00000621181 RAPGEF6Q8TEU7 1601 aa13.22□□□□□ -0.29
CLK1-215ENST00000621181 CSRNP3Q8WYN3 585 aa13.21□□□□□ -0.29
CLK1-215ENST00000621181 SAMD9Q5K651 1589 aa13.21□□□□□ -0.3
CLK1-215ENST00000621181 RANGAP1P46060 587 aaPredicted RBP13.2□□□□□ -0.3
CLK1-215ENST00000621181 NEO1Q92859 1461 aa13.2□□□□□ -0.3
CLK1-215ENST00000621181 ARID4BQ4LE39 1312 aaPredicted RBP13.2□□□□□ -0.3
CLK1-215ENST00000621181 PTPRMP28827 1452 aa13.2□□□□□ -0.3
CLK1-215ENST00000621181 ADAMTSL3P82987 1691 aa13.18□□□□□ -0.3
CLK1-215ENST00000621181 NUP153P49790 1475 aaKnown RBP13.17□□□□□ -0.3
CLK1-215ENST00000621181 FRMPD1Q5SYB0 1578 aa13.15□□□□□ -0.3
CLK1-215ENST00000621181 PLEKHD1A6NEE1 506 aa13.15□□□□□ -0.3
CLK1-215ENST00000621181 FHOD3Q2V2M9 1422 aa13.15□□□□□ -0.31
CLK1-215ENST00000621181 BCORL1Q5H9F3 1711 aa13.14□□□□□ -0.31
CLK1-215ENST00000621181 MSH5O43196 834 aa13.14□□□□□ -0.31
CLK1-215ENST00000621181 FBXO41Q8TF61 875 aa13.14□□□□□ -0.31
CLK1-215ENST00000621181 MADDQ8WXG6 1647 aa13.13□□□□□ -0.31
CLK1-215ENST00000621181 DENND4BO75064 1496 aaPredicted RBP13.12□□□□□ -0.31
CLK1-215ENST00000621181 EEA1Q15075 1411 aa13.11□□□□□ -0.31
CLK1-215ENST00000621181 FANCAO15360 1455 aa13.11□□□□□ -0.31
CLK1-215ENST00000621181 PCF11O94913 1555 aaKnown RBP13.11□□□□□ -0.31
CLK1-215ENST00000621181 ARHGEF40Q8TER5 1519 aa13.11□□□□□ -0.31
CLK1-215ENST00000621181 AKNAQ7Z591 1439 aa13.1□□□□□ -0.31
CLK1-215ENST00000621181 CFAP74Q9C0B2 1584 aa13.09□□□□□ -0.31
CLK1-215ENST00000621181 RICTORQ6R327 1708 aa13.09□□□□□ -0.31
CLK1-215ENST00000621181 LMTK3Q96Q04 1460 aa13.09□□□□□ -0.31
CLK1-215ENST00000621181 RIMS1Q86UR5 1692 aaKnown RBP13.08□□□□□ -0.32
CLK1-215ENST00000621181 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.08□□□□□ -0.32
CLK1-215ENST00000621181 POGZQ7Z3K3 1410 aa13.07□□□□□ -0.32
CLK1-215ENST00000621181 EFCAB5A4FU69 1503 aa13.06□□□□□ -0.32
CLK1-215ENST00000621181 TTC37Q6PGP7 1564 aa13.06□□□□□ -0.32
CLK1-215ENST00000621181 ZMYM4Q5VZL5 1548 aa13.04□□□□□ -0.32
CLK1-215ENST00000621181 ZFYVE16Q7Z3T8 1539 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 108 ms