RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 NISCHQ9Y2I1 1504 aa19.72■□□□□ 0.75
CLK1-215ENST00000621181 AEBP2Q6ZN18 517 aaPredicted RBP18.26■□□□□ 0.51
CLK1-215ENST00000621181 ABCC9O60706 1549 aa17.95■□□□□ 0.46
CLK1-215ENST00000621181 CCDC180Q9P1Z9 1646 aa17.75■□□□□ 0.43
CLK1-215ENST00000621181 CHIC1Q5VXU3 224 aa17.64■□□□□ 0.41
CLK1-215ENST00000621181 RB1CC1Q8TDY2 1594 aa17■□□□□ 0.31
CLK1-215ENST00000621181 DNAJC5BQ9UF47 199 aa16.96■□□□□ 0.3
CLK1-215ENST00000621181 NACADO15069 1562 aa16.84■□□□□ 0.29
CLK1-215ENST00000621181 DCAF8L2P0C7V8 631 aa16.8■□□□□ 0.28
CLK1-215ENST00000621181 PABPN1Q86U42 306 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLK1-215ENST00000621181 UNC13AQ9UPW8 1703 aa16.6■□□□□ 0.25
CLK1-215ENST00000621181 MYO15BQ96JP2 1530 aa16.54■□□□□ 0.24
CLK1-215ENST00000621181 BICRAQ9NZM4 1560 aa16.48■□□□□ 0.23
CLK1-215ENST00000621181 ZCCHC6Q5VYS8 1495 aaKnown RBP16.31■□□□□ 0.2
CLK1-215ENST00000621181 DCAF1Q9Y4B6 1507 aa16.26■□□□□ 0.19
CLK1-215ENST00000621181 SHROOM4Q9ULL8 1493 aa16.26■□□□□ 0.19
CLK1-215ENST00000621181 SCRIBQ14160 1630 aa16.2■□□□□ 0.18
CLK1-215ENST00000621181 CC2D2AQ9P2K1 1620 aa16.19■□□□□ 0.18
CLK1-215ENST00000621181 CECR2Q9BXF3 1484 aa16.18■□□□□ 0.18
CLK1-215ENST00000621181 EIF4G1Q04637 1599 aaKnown RBP16.12■□□□□ 0.17
CLK1-215ENST00000621181 DNAJC5Q9H3Z4 198 aa15.71■□□□□ 0.1
CLK1-215ENST00000621181 PHF23Q9BUL5 403 aaPredicted RBP15.61■□□□□ 0.09
CLK1-215ENST00000621181 ERCC6Q03468 1493 aa15.54■□□□□ 0.08
CLK1-215ENST00000621181 NCAPD3P42695 1498 aa15.54■□□□□ 0.08
CLK1-215ENST00000621181 CUX2O14529 1486 aa15.53■□□□□ 0.08
CLK1-215ENST00000621181 ATAD2BQ9ULI0 1458 aa15.48■□□□□ 0.07
CLK1-215ENST00000621181 SMARCA2P51531 1590 aa15.44■□□□□ 0.06
CLK1-215ENST00000621181 SMARCA4P51532 1647 aa15.42■□□□□ 0.06
CLK1-215ENST00000621181 HMGXB3Q12766 1538 aa15.41■□□□□ 0.06
CLK1-215ENST00000621181 NESP48681 1621 aa15.36■□□□□ 0.05
CLK1-215ENST00000621181 SENP3Q9H4L4 574 aaPredicted RBP15.36■□□□□ 0.05
CLK1-215ENST00000621181 BAZ1BQ9UIG0 1483 aaKnown RBP15.35■□□□□ 0.05
CLK1-215ENST00000621181 BAZ1AQ9NRL2 1556 aaPredicted RBP15.33■□□□□ 0.05
CLK1-215ENST00000621181 PEG3Q9GZU2 1588 aa15.25■□□□□ 0.03
CLK1-215ENST00000621181 LAMC3Q9Y6N6 1575 aa15.23■□□□□ 0.03
CLK1-215ENST00000621181 THOC2Q8NI27 1593 aaKnown RBP15.22■□□□□ 0.03
CLK1-215ENST00000621181 MROH2BQ7Z745 1585 aa15.2■□□□□ 0.02
CLK1-215ENST00000621181 PDS5BQ9NTI5 1447 aa15.16■□□□□ 0.02
CLK1-215ENST00000621181 KIF21AQ7Z4S6 1674 aa15.15■□□□□ 0.02
CLK1-215ENST00000621181 CADPSQ9ULU8 1353 aa15.08■□□□□ 0
CLK1-215ENST00000621181 MRC2Q9UBG0 1479 aa15.03■□□□□ -0
CLK1-215ENST00000621181 WIZO95785 1651 aa15.01□□□□□ -0.01
CLK1-215ENST00000621181 TRIM41Q8WV44 630 aa14.99□□□□□ -0.01
CLK1-215ENST00000621181 WDR62O43379 1518 aa14.99□□□□□ -0.01
CLK1-215ENST00000621181 CEP164Q9UPV0 1460 aa14.95□□□□□ -0.02
CLK1-215ENST00000621181 FANCD2Q9BXW9 1451 aa14.92□□□□□ -0.02
CLK1-215ENST00000621181 CFTRP13569 1480 aa14.87□□□□□ -0.03
CLK1-215ENST00000621181 RSF1Q96T23 1441 aaPredicted RBP14.83□□□□□ -0.04
CLK1-215ENST00000621181 OSCARQ8IYS5 282 aa14.82□□□□□ -0.04
CLK1-215ENST00000621181 TOP2AP11388 1531 aaKnown RBP14.8□□□□□ -0.04
CLK1-215ENST00000621181 URB2Q14146 1524 aaKnown RBP14.78□□□□□ -0.04
CLK1-215ENST00000621181 PRDM2Q13029 1718 aa14.69□□□□□ -0.06
CLK1-215ENST00000621181 IFT140Q96RY7 1462 aa14.64□□□□□ -0.07
CLK1-215ENST00000621181 CCDC88BA6NC98 1476 aa14.64□□□□□ -0.07
CLK1-215ENST00000621181 ZNF608Q9ULD9 1512 aaPredicted RBP14.64□□□□□ -0.07
CLK1-215ENST00000621181 RIMBP3CA6NJZ7 1639 aa14.61□□□□□ -0.07
CLK1-215ENST00000621181 RIMBP3BA6NNM3 1639 aa14.61□□□□□ -0.07
CLK1-215ENST00000621181 RIMBP3Q9UFD9 1639 aa14.61□□□□□ -0.07
CLK1-215ENST00000621181 TOPBP1Q92547 1522 aa14.6□□□□□ -0.07
CLK1-215ENST00000621181 ABCC8Q09428 1581 aa14.56□□□□□ -0.08
CLK1-215ENST00000621181 ARHGEF11O15085 1522 aa14.56□□□□□ -0.08
CLK1-215ENST00000621181 EIF4G3O43432 1585 aaKnown RBP14.55□□□□□ -0.08
CLK1-215ENST00000621181 DNMBPQ6XZF7 1577 aa14.53□□□□□ -0.08
CLK1-215ENST00000621181 CYB5RLQ6IPT4 315 aa14.5□□□□□ -0.09
CLK1-215ENST00000621181 AQRO60306 1485 aaKnown RBP eCLIP14.49□□□□□ -0.099e-8■■■□□ 15.7
CLK1-215ENST00000621181 FBLN2P98095 1184 aa14.48□□□□□ -0.09
CLK1-215ENST00000621181 CHD1O14646 1710 aa14.47□□□□□ -0.09
CLK1-215ENST00000621181 TARBP1Q13395 1621 aaKnown RBP14.47□□□□□ -0.09
CLK1-215ENST00000621181 POLA1P09884 1462 aaPredicted RBP14.45□□□□□ -0.1
CLK1-215ENST00000621181 TRHP20396 242 aaPredicted RBP14.41□□□□□ -0.1
CLK1-215ENST00000621181 ARAP1Q96P48 1450 aa14.4□□□□□ -0.1
CLK1-215ENST00000621181 RAD54L2Q9Y4B4 1467 aa14.4□□□□□ -0.1
CLK1-215ENST00000621181 SOGA1O94964 1423 aa14.39□□□□□ -0.11
CLK1-215ENST00000621181 TDRD9Q8NDG6 1382 aaKnown RBP14.39□□□□□ -0.11
CLK1-215ENST00000621181 FOXD1Q16676 465 aa14.37□□□□□ -0.11
CLK1-215ENST00000621181 SNAPC4Q5SXM2 1469 aa14.34□□□□□ -0.11
CLK1-215ENST00000621181 FGD5Q6ZNL6 1462 aa14.34□□□□□ -0.11
CLK1-215ENST00000621181 CHMP7Q8WUX9 453 aaPredicted RBP14.33□□□□□ -0.12
CLK1-215ENST00000621181 WDR97A6NE52 1622 aa14.31□□□□□ -0.12
CLK1-215ENST00000621181 MAGI1Q96QZ7 1491 aaPredicted RBP14.3□□□□□ -0.12
CLK1-215ENST00000621181 SYNJ1O43426 1573 aa14.29□□□□□ -0.12
CLK1-215ENST00000621181 CUX1P39880 1505 aa14.29□□□□□ -0.12
CLK1-215ENST00000621181 CLASP1Q7Z460 1538 aa14.28□□□□□ -0.12
CLK1-215ENST00000621181 GRIN2BQ13224 1484 aa14.28□□□□□ -0.12
CLK1-215ENST00000621181 SYNJ2O15056 1496 aa14.25□□□□□ -0.13
CLK1-215ENST00000621181 PLPPR3Q6T4P5 718 aa14.25□□□□□ -0.13
CLK1-215ENST00000621181 GAPVD1Q14C86 1478 aa14.22□□□□□ -0.13
CLK1-215ENST00000621181 PBRM1Q86U86 1689 aa14.2□□□□□ -0.14
CLK1-215ENST00000621181 ABCA10Q8WWZ4 1543 aa14.16□□□□□ -0.14
CLK1-215ENST00000621181 ABCA5Q8WWZ7 1642 aa14.14□□□□□ -0.15
CLK1-215ENST00000621181 SUPT5HO00267 1087 aaKnown RBP14.11□□□□□ -0.15
CLK1-215ENST00000621181 WRNQ14191 1432 aaPredicted RBP eCLIP14.1□□□□□ -0.15
CLK1-215ENST00000621181 GRIN2AQ12879 1464 aa14.1□□□□□ -0.15
CLK1-215ENST00000621181 ADAMTS12P58397 1594 aa14.05□□□□□ -0.16
CLK1-215ENST00000621181 ERCC6L2Q5T890 1561 aa14.05□□□□□ -0.16
CLK1-215ENST00000621181 NUP160Q12769 1436 aa14.04□□□□□ -0.16
CLK1-215ENST00000621181 CEP170Q5SW79 1584 aa14.04□□□□□ -0.16
CLK1-215ENST00000621181 FHAD1B1AJZ9 1412 aa14.02□□□□□ -0.16
CLK1-215ENST00000621181 TOP2BQ02880 1626 aa14.02□□□□□ -0.17
CLK1-215ENST00000621181 BIVM-ERCC5R4GMW8 1640 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms