RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	JPH4	Q96JJ6	628 aa		43.31	■■■■■ 4.52
VEGFA-228	ENST00000617771	PRG4	Q92954	1404 aa	Predicted RBP	43.28	■■■■■ 4.52
VEGFA-228	ENST00000617771	CARMIL1	Q5VZK9	1371 aa		43.24	■■■■■ 4.51
VEGFA-228	ENST00000617771	KIAA0586	Q9BVV6	1533 aa		43.18	■■■■■ 4.5
VEGFA-228	ENST00000617771	RAPGEF2	Q9Y4G8	1499 aa		42.92	■■■■■ 4.46
VEGFA-228	ENST00000617771	IQGAP2	Q13576	1575 aa		42.85	■■■■■ 4.45
VEGFA-228	ENST00000617771	CARMIL2	Q6F5E8	1435 aa		42.78	■■■■■ 4.44
VEGFA-228	ENST00000617771	NPM1	P06748	294 aa	Known RBP eCLIP	42.72	■■■■■ 4.43
VEGFA-228	ENST00000617771	PTPRG	P23470	1445 aa		42.69	■■■■■ 4.42
VEGFA-228	ENST00000617771	ADCY10	Q96PN6	1610 aa		42.68	■■■■■ 4.42
VEGFA-228	ENST00000617771	TNIK	Q9UKE5	1360 aa		42.66	■■■■■ 4.42
VEGFA-228	ENST00000617771	PRX	Q9BXM0	1461 aa		42.59	■■■■■ 4.41
VEGFA-228	ENST00000617771	UGGT2	Q9NYU1	1516 aa		42.59	■■■■■ 4.41
VEGFA-228	ENST00000617771	DISP1	Q96F81	1524 aa		42.57	■■■■■ 4.41
VEGFA-228	ENST00000617771	TTBK1	Q5TCY1	1321 aa	Predicted RBP	42.57	■■■■■ 4.41
VEGFA-228	ENST00000617771	MAPKBP1	O60336	1514 aa		42.56	■■■■■ 4.4
VEGFA-228	ENST00000617771	CTTNBP2	Q8WZ74	1663 aa		42.5	■■■■■ 4.39
VEGFA-228	ENST00000617771	KIF13A	Q9H1H9	1805 aa		42.47	■■■■■ 4.39
VEGFA-228	ENST00000617771	ABCC10	Q5T3U5	1492 aa		42.44	■■■■■ 4.38
VEGFA-228	ENST00000617771	KIAA0556	O60303	1618 aa		42.44	■■■■■ 4.38
VEGFA-228	ENST00000617771	CSRNP3	Q8WYN3	585 aa		42.41	■■■■■ 4.38
VEGFA-228	ENST00000617771	FAM69C	Q0P6D2	419 aa		42.4	■■■■■ 4.38
VEGFA-228	ENST00000617771	ABCC2	Q92887	1545 aa		42.39	■■■■■ 4.38
VEGFA-228	ENST00000617771	EEA1	Q15075	1411 aa		42.38	■■■■■ 4.38
VEGFA-228	ENST00000617771	UACA	Q9BZF9	1416 aa		42.37	■■■■■ 4.37
VEGFA-228	ENST00000617771	UHRF1BP1L	A0JNW5	1464 aa		42.37	■■■■■ 4.37
VEGFA-228	ENST00000617771	GOLGA3	Q08378	1498 aa		42.34	■■■■■ 4.37
VEGFA-228	ENST00000617771	DIP2B	Q9P265	1576 aa		42.34	■■■■■ 4.37
VEGFA-228	ENST00000617771	PLB1	Q6P1J6	1458 aa		42.18	■■■■■ 4.34
VEGFA-228	ENST00000617771	ASXL2	Q76L83	1435 aa		42.18	■■■■■ 4.34
VEGFA-228	ENST00000617771	KDM5B	Q9UGL1	1544 aa		42.16	■■■■■ 4.34
VEGFA-228	ENST00000617771	FAM9A	Q8IZU1	332 aa	Predicted RBP	42.11	■■■■■ 4.33
VEGFA-228	ENST00000617771	CHIC1	Q5VXU3	224 aa		42.08	■■■■■ 4.33
VEGFA-228	ENST00000617771	ZCCHC11	Q5TAX3	1644 aa	Known RBP	42.06	■■■■■ 4.32
VEGFA-228	ENST00000617771	ABCA8	O94911	1581 aa		42.01	■■■■■ 4.32
VEGFA-228	ENST00000617771	GLI2	P10070	1586 aa		42	■■■■■ 4.31
VEGFA-228	ENST00000617771	TSPOAP1	O95153	1857 aa		41.96	■■■■■ 4.31
VEGFA-228	ENST00000617771	P3H3	Q8IVL6	736 aa		41.95	■■■■■ 4.31
VEGFA-228	ENST00000617771	KIF21B	O75037	1637 aa		41.95	■■■■■ 4.31
VEGFA-228	ENST00000617771	SAMD9	Q5K651	1589 aa		41.93	■■■■■ 4.3
VEGFA-228	ENST00000617771	EPRS	P07814	1512 aa	Known RBP	41.92	■■■■■ 4.3
VEGFA-228	ENST00000617771	WDR7	Q9Y4E6	1490 aa		41.87	■■■■■ 4.29
VEGFA-228	ENST00000617771	KDM6B	O15054	1643 aa		41.85	■■■■■ 4.29
VEGFA-228	ENST00000617771	RANGAP1	P46060	587 aa	Predicted RBP	41.79	■■■■■ 4.28
VEGFA-228	ENST00000617771	PPRC1	Q5VV67	1664 aa	Known RBP	41.76	■■■■■ 4.28
VEGFA-228	ENST00000617771	MAP3K4	Q9Y6R4	1608 aa		41.76	■■■■■ 4.28
VEGFA-228	ENST00000617771	TEX14	Q8IWB6	1497 aa		41.68	■■■■■ 4.26
VEGFA-228	ENST00000617771	FHOD3	Q2V2M9	1422 aa		41.68	■■■■■ 4.26
VEGFA-228	ENST00000617771	RAPGEF6	Q8TEU7	1601 aa		41.67	■■■■■ 4.26
VEGFA-228	ENST00000617771	EFCAB5	A4FU69	1503 aa		41.67	■■■■■ 4.26
VEGFA-228	ENST00000617771	ATP10B	O94823	1461 aa		41.66	■■■■■ 4.26
VEGFA-228	ENST00000617771	ARID3C	A6NKF2	412 aa		41.65	■■■■■ 4.26
VEGFA-228	ENST00000617771	AEBP2	Q6ZN18	517 aa	Predicted RBP	41.65	■■■■■ 4.26
VEGFA-228	ENST00000617771	KCNH8	Q96L42	1107 aa		41.65	■■■■■ 4.26
VEGFA-228	ENST00000617771	UBTF	P17480	764 aa	Known RBP	41.64	■■■■■ 4.26
VEGFA-228	ENST00000617771	EHMT2	Q96KQ7	1210 aa		41.62	■■■■■ 4.25
VEGFA-228	ENST00000617771	CFAP43	Q8NDM7	1665 aa		41.56	■■■■■ 4.24
VEGFA-228	ENST00000617771	CD109	Q6YHK3	1445 aa		41.56	■■■■■ 4.24
VEGFA-228	ENST00000617771	NUP153	P49790	1475 aa	Known RBP	41.51	■■■■■ 4.24
VEGFA-228	ENST00000617771	MAGI3	Q5TCQ9	1506 aa		41.5	■■■■■ 4.23
VEGFA-228	ENST00000617771	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	41.5	■■■■■ 4.23
VEGFA-228	ENST00000617771	HNRNPUL2	Q1KMD3	747 aa	Known RBP	41.5	■■■■■ 4.23
VEGFA-228	ENST00000617771	COL17A1	Q9UMD9	1497 aa	Predicted RBP	41.44	■■■■■ 4.22
VEGFA-228	ENST00000617771	ABCA9	Q8IUA7	1624 aa		41.34	■■■■■ 4.21
VEGFA-228	ENST00000617771	ARHGAP35	Q9NRY4	1499 aa		41.34	■■■■■ 4.21
VEGFA-228	ENST00000617771	FMN1	Q68DA7	1419 aa		41.31	■■■■■ 4.2
VEGFA-228	ENST00000617771	PLEKHD1	A6NEE1	506 aa		41.29	■■■■■ 4.2
VEGFA-228	ENST00000617771	PHLDB1	Q86UU1	1377 aa		41.18	■■■■■ 4.18
VEGFA-228	ENST00000617771	HECW1	Q76N89	1606 aa		41.17	■■■■■ 4.18
VEGFA-228	ENST00000617771	KDM4F	A0A1W2PPD8	638 aa		41.16	■■■■■ 4.18
VEGFA-228	ENST00000617771	CDK13	Q14004	1512 aa	Known RBP	41.15	■■■■■ 4.18
VEGFA-228	ENST00000617771	ARAP3	Q8WWN8	1544 aa		41.15	■■■■■ 4.18
VEGFA-228	ENST00000617771	ATP1B4	Q9UN42	357 aa	Predicted RBP	41.15	■■■■■ 4.18
VEGFA-228	ENST00000617771	NEO1	Q92859	1461 aa		41.11	■■■■■ 4.17
VEGFA-228	ENST00000617771	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	41.03	■■■■■ 4.16	2e-6	■■□□□ 11.9
VEGFA-228	ENST00000617771	CDK11A	Q9UQ88	783 aa	Predicted RBP	41.01	■■■■■ 4.16
VEGFA-228	ENST00000617771	ADGRL1	O94910	1474 aa		41	■■■■■ 4.15
VEGFA-228	ENST00000617771	TTC37	Q6PGP7	1564 aa		40.95	■■■■■ 4.15
VEGFA-228	ENST00000617771	CFAP74	Q9C0B2	1584 aa		40.92	■■■■■ 4.14
VEGFA-228	ENST00000617771	RAPGEF3	O95398	923 aa		40.91	■■■■■ 4.14
VEGFA-228	ENST00000617771	FANCA	O15360	1455 aa		40.9	■■■■■ 4.14
VEGFA-228	ENST00000617771	CLIP1	P30622	1438 aa		40.9	■■■■■ 4.14
VEGFA-228	ENST00000617771	CASKIN1	Q8WXD9	1431 aa		40.89	■■■■■ 4.14
VEGFA-228	ENST00000617771	AKNA	Q7Z591	1439 aa		40.87	■■■■■ 4.13
VEGFA-228	ENST00000617771	PCF11	O94913	1555 aa	Known RBP	40.85	■■■■■ 4.13
VEGFA-228	ENST00000617771	TRO	Q12816	1431 aa	Predicted RBP	40.84	■■■■■ 4.13
VEGFA-228	ENST00000617771	DENND4B	O75064	1496 aa	Predicted RBP	40.82	■■■■■ 4.12
VEGFA-228	ENST00000617771	CCDC18	Q5T9S5	1454 aa		40.82	■■■■■ 4.12
VEGFA-228	ENST00000617771	LRRIQ1	Q96JM4	1722 aa		40.81	■■■■■ 4.12
VEGFA-228	ENST00000617771	PLCH2	O75038	1416 aa		40.81	■■■■■ 4.12
VEGFA-228	ENST00000617771	FRMPD1	Q5SYB0	1578 aa		40.81	■■■■■ 4.12
VEGFA-228	ENST00000617771	KIF14	Q15058	1648 aa		40.8	■■■■■ 4.12
VEGFA-228	ENST00000617771	FYCO1	Q9BQS8	1478 aa		40.77	■■■■■ 4.12
VEGFA-228	ENST00000617771	MYO5C	Q9NQX4	1742 aa		40.71	■■■■■ 4.11
VEGFA-228	ENST00000617771	RICTOR	Q6R327	1708 aa		40.7	■■■■■ 4.11
VEGFA-228	ENST00000617771	EFCAB2	Q5VUJ9	269 aa		40.67	■■■■■ 4.1
VEGFA-228	ENST00000617771	SCAPER	Q9BY12	1400 aa		40.62	■■■■■ 4.09
VEGFA-228	ENST00000617771	ARHGEF40	Q8TER5	1519 aa		40.61	■■■■■ 4.09
VEGFA-228	ENST00000617771	ZMYM4	Q5VZL5	1548 aa		40.6	■■■■■ 4.09
VEGFA-228	ENST00000617771	ARHGAP5	Q13017	1502 aa		40.58	■■■■■ 4.09

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