RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 GRIN2AQ12879 1464 aa28.44■■■□□ 2.14
VRK3-225ENST00000601912 FBLN2P98095 1184 aa28.41■■■□□ 2.14
VRK3-225ENST00000601912 ARHGAP35Q9NRY4 1499 aa28.34■■■□□ 2.13
VRK3-225ENST00000601912 KIAA0586Q9BVV6 1533 aa28.29■■■□□ 2.12
VRK3-225ENST00000601912 ARAP1Q96P48 1450 aa28.29■■■□□ 2.12
VRK3-225ENST00000601912 VPS8Q8N3P4 1428 aa28.28■■■□□ 2.12
VRK3-225ENST00000601912 IQGAP2Q13576 1575 aa28.28■■■□□ 2.12
VRK3-225ENST00000601912 EFCAB5A4FU69 1503 aa28.28■■■□□ 2.12
VRK3-225ENST00000601912 NUP160Q12769 1436 aa28.24■■■□□ 2.11
VRK3-225ENST00000601912 CEP170Q5SW79 1584 aa28.22■■■□□ 2.11
VRK3-225ENST00000601912 CHD1O14646 1710 aa28.18■■■□□ 2.1
VRK3-225ENST00000601912 P3H3Q8IVL6 736 aa28.18■■■□□ 2.1
VRK3-225ENST00000601912 SAMD9Q5K651 1589 aa28.16■■■□□ 2.1
VRK3-225ENST00000601912 UGGT2Q9NYU1 1516 aa28.15■■■□□ 2.1
VRK3-225ENST00000601912 FHOD3Q2V2M9 1422 aa28.13■■■□□ 2.09
VRK3-225ENST00000601912 APLP2Q06481 763 aa28.1■■■□□ 2.09
VRK3-225ENST00000601912 JPH4Q96JJ6 628 aa28.07■■■□□ 2.08
VRK3-225ENST00000601912 FMN1Q68DA7 1419 aa28.06■■■□□ 2.08
VRK3-225ENST00000601912 DISP1Q96F81 1524 aa28■■■□□ 2.07
VRK3-225ENST00000601912 CARMIL2Q6F5E8 1435 aa27.99■■■□□ 2.07
VRK3-225ENST00000601912 PPARGC1BQ86YN6 1023 aaKnown RBP27.98■■■□□ 2.07
VRK3-225ENST00000601912 KIAA0556O60303 1618 aa27.98■■■□□ 2.07
VRK3-225ENST00000601912 CASKIN1Q8WXD9 1431 aa27.94■■■□□ 2.06
VRK3-225ENST00000601912 FYCO1Q9BQS8 1478 aa27.92■■■□□ 2.06
VRK3-225ENST00000601912 PCF11O94913 1555 aaKnown RBP27.91■■■□□ 2.06
VRK3-225ENST00000601912 ATP1B4Q9UN42 357 aaPredicted RBP27.91■■■□□ 2.06
VRK3-225ENST00000601912 TRIM26Q12899 539 aaPredicted RBP27.88■■■□□ 2.05
VRK3-225ENST00000601912 PRG4Q92954 1404 aaPredicted RBP27.88■■■□□ 2.05
VRK3-225ENST00000601912 CLASP1Q7Z460 1538 aa27.87■■■□□ 2.05
VRK3-225ENST00000601912 SHROOM2Q13796 1616 aa27.86■■■□□ 2.05
VRK3-225ENST00000601912 MAP3K1Q13233 1512 aa27.85■■■□□ 2.05
VRK3-225ENST00000601912 TTBK1Q5TCY1 1321 aaPredicted RBP27.83■■■□□ 2.05
VRK3-225ENST00000601912 OSCARQ8IYS5 282 aa27.81■■■□□ 2.04
VRK3-225ENST00000601912 TIAM1Q13009 1591 aa27.79■■■□□ 2.04
VRK3-225ENST00000601912 PCGF6Q9BYE7 350 aa27.76■■■□□ 2.03
VRK3-225ENST00000601912 KANK4Q5T7N3 995 aaPredicted RBP27.75■■■□□ 2.03
VRK3-225ENST00000601912 HECW1Q76N89 1606 aa27.75■■■□□ 2.03
VRK3-225ENST00000601912 CFAP43Q8NDM7 1665 aa27.73■■■□□ 2.03
VRK3-225ENST00000601912 CCDC18Q5T9S5 1454 aa27.71■■■□□ 2.03
VRK3-225ENST00000601912 PTPRGP23470 1445 aa27.71■■■□□ 2.03
VRK3-225ENST00000601912 RAPGEF6Q8TEU7 1601 aa27.69■■■□□ 2.02
VRK3-225ENST00000601912 LRRC9Q6ZRR7 1453 aa27.68■■■□□ 2.02
VRK3-225ENST00000601912 EPRSP07814 1512 aaKnown RBP27.65■■■□□ 2.02
VRK3-225ENST00000601912 PLB1Q6P1J6 1458 aa27.64■■■□□ 2.02
VRK3-225ENST00000601912 ERCC6L2Q5T890 1561 aa27.63■■■□□ 2.01
VRK3-225ENST00000601912 LRRIQ1Q96JM4 1722 aa27.63■■■□□ 2.01
VRK3-225ENST00000601912 NUP153P49790 1475 aaKnown RBP27.62■■■□□ 2.01
VRK3-225ENST00000601912 ABCA8O94911 1581 aa27.59■■■□□ 2.01
VRK3-225ENST00000601912 MTUS2Q5JR59 1369 aa27.59■■■□□ 2.01
VRK3-225ENST00000601912 ARID3CA6NKF2 412 aa27.56■■■□□ 2
VRK3-225ENST00000601912 CDK13Q14004 1512 aaKnown RBP27.55■■■□□ 2
VRK3-225ENST00000601912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.53■■■□□ 2
VRK3-225ENST00000601912 HNRNPUL2Q1KMD3 747 aaKnown RBP27.53■■■□□ 2
VRK3-225ENST00000601912 CDK11AQ9UQ88 783 aaPredicted RBP27.53■■■□□ 2
VRK3-225ENST00000601912 UACAQ9BZF9 1416 aa27.53■■■□□ 2
VRK3-225ENST00000601912 EHBP1L1Q8N3D4 1523 aa27.51■■□□□ 1.99
VRK3-225ENST00000601912 MAGI3Q5TCQ9 1506 aa27.44■■□□□ 1.98
VRK3-225ENST00000601912 ABCC2Q92887 1545 aa27.43■■□□□ 1.98
VRK3-225ENST00000601912 ATP10BO94823 1461 aa27.42■■□□□ 1.98
VRK3-225ENST00000601912 SUPT6HQ7KZ85 1726 aaKnown RBP27.42■■□□□ 1.98
VRK3-225ENST00000601912 UHRF1BP1LA0JNW5 1464 aa27.4■■□□□ 1.98
VRK3-225ENST00000601912 PHLDB1Q86UU1 1377 aa27.39■■□□□ 1.98
VRK3-225ENST00000601912 RRBP1Q9P2E9 1410 aaKnown RBP27.39■■□□□ 1.98
VRK3-225ENST00000601912 NCOA2Q15596 1464 aa27.39■■□□□ 1.97
VRK3-225ENST00000601912 PLEKHD1A6NEE1 506 aa27.37■■□□□ 1.97
VRK3-225ENST00000601912 TROQ12816 1431 aaPredicted RBP27.36■■□□□ 1.97
VRK3-225ENST00000601912 CCNB3Q8WWL7 1395 aa27.35■■□□□ 1.97
VRK3-225ENST00000601912 ARHGEF11O15085 1522 aa27.31■■□□□ 1.96
VRK3-225ENST00000601912 MYOM3Q5VTT5 1437 aa27.28■■□□□ 1.96
VRK3-225ENST00000601912 KDM5BQ9UGL1 1544 aa27.26■■□□□ 1.96
VRK3-225ENST00000601912 FGD6Q6ZV73 1430 aa27.24■■□□□ 1.95
VRK3-225ENST00000601912 ADCY10Q96PN6 1610 aa27.23■■□□□ 1.95
VRK3-225ENST00000601912 ZCCHC11Q5TAX3 1644 aaKnown RBP27.22■■□□□ 1.95
VRK3-225ENST00000601912 FAM50AQ14320 339 aaKnown RBP27.21■■□□□ 1.95
VRK3-225ENST00000601912 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.2■■□□□ 1.94
VRK3-225ENST00000601912 KIF14Q15058 1648 aa27.19■■□□□ 1.94
VRK3-225ENST00000601912 MIA2Q96PC5 1412 aa27.17■■□□□ 1.94
VRK3-225ENST00000601912 NPM1P06748 294 aaKnown RBP eCLIP27.15■■□□□ 1.94
VRK3-225ENST00000601912 RIMBP3CA6NJZ7 1639 aa27.14■■□□□ 1.94
VRK3-225ENST00000601912 RIMBP3BA6NNM3 1639 aa27.14■■□□□ 1.94
VRK3-225ENST00000601912 RIMBP3Q9UFD9 1639 aa27.14■■□□□ 1.94
VRK3-225ENST00000601912 ITGAEP38570 1179 aa27.11■■□□□ 1.93
VRK3-225ENST00000601912 PTPN23Q9H3S7 1636 aa27.1■■□□□ 1.93
VRK3-225ENST00000601912 ABCC10Q5T3U5 1492 aa27.1■■□□□ 1.93
VRK3-225ENST00000601912 ITSN2Q9NZM3 1697 aa27.09■■□□□ 1.93
VRK3-225ENST00000601912 GPATCH8Q9UKJ3 1502 aaKnown RBP27.08■■□□□ 1.93
VRK3-225ENST00000601912 CYB5RLQ6IPT4 315 aa27.08■■□□□ 1.92
VRK3-225ENST00000601912 TCOF1Q13428 1488 aaKnown RBP27.07■■□□□ 1.92
VRK3-225ENST00000601912 CFDP1Q9UEE9 299 aaPredicted RBP27.07■■□□□ 1.92
VRK3-225ENST00000601912 KCNH8Q96L42 1107 aa27.06■■□□□ 1.92
VRK3-225ENST00000601912 WDR7Q9Y4E6 1490 aa27.03■■□□□ 1.92
VRK3-225ENST00000601912 ASXL2Q76L83 1435 aa27■■□□□ 1.91
VRK3-225ENST00000601912 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27■■□□□ 1.91
VRK3-225ENST00000601912 CDC42BPAQ5VT25 1732 aa26.99■■□□□ 1.91
VRK3-225ENST00000601912 ZNF777Q9ULD5 760 aaPredicted RBP26.95■■□□□ 1.91
VRK3-225ENST00000601912 TTC37Q6PGP7 1564 aa26.95■■□□□ 1.9
VRK3-225ENST00000601912 ZNF644Q9H582 1327 aaPredicted RBP26.93■■□□□ 1.9
VRK3-225ENST00000601912 CAMSAP2Q08AD1 1489 aa26.92■■□□□ 1.9
VRK3-225ENST00000601912 PREX2Q70Z35 1606 aa26.92■■□□□ 1.9
VRK3-225ENST00000601912 MYO5CQ9NQX4 1742 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms