RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 TTBK1Q5TCY1 1321 aaPredicted RBP26.48■■□□□ 1.83
SHKBP1-216ENST00000598201 CHMP7Q8WUX9 453 aaPredicted RBP26.46■■□□□ 1.83
SHKBP1-216ENST00000598201 FHAD1B1AJZ9 1412 aa26.46■■□□□ 1.83
SHKBP1-216ENST00000598201 SYNJ2O15056 1496 aa26.45■■□□□ 1.82
SHKBP1-216ENST00000598201 ARAP1Q96P48 1450 aa26.45■■□□□ 1.82
SHKBP1-216ENST00000598201 ADAMTS12P58397 1594 aa26.44■■□□□ 1.82
SHKBP1-216ENST00000598201 CUL7Q14999 1698 aa26.41■■□□□ 1.82
SHKBP1-216ENST00000598201 CHD1O14646 1710 aa26.37■■□□□ 1.81
SHKBP1-216ENST00000598201 ARHGAP35Q9NRY4 1499 aa26.37■■□□□ 1.81
SHKBP1-216ENST00000598201 GRIN2AQ12879 1464 aa26.33■■□□□ 1.81
SHKBP1-216ENST00000598201 OSCARQ8IYS5 282 aa26.33■■□□□ 1.81
SHKBP1-216ENST00000598201 APLP2Q06481 763 aa26.26■■□□□ 1.79
SHKBP1-216ENST00000598201 NUP160Q12769 1436 aa26.19■■□□□ 1.78
SHKBP1-216ENST00000598201 CEP170Q5SW79 1584 aa26.17■■□□□ 1.78
SHKBP1-216ENST00000598201 CTTNBP2Q8WZ74 1663 aa26.14■■□□□ 1.77
SHKBP1-216ENST00000598201 KANK4Q5T7N3 995 aaPredicted RBP26.1■■□□□ 1.77
SHKBP1-216ENST00000598201 CLASP1Q7Z460 1538 aa26.09■■□□□ 1.77
SHKBP1-216ENST00000598201 P3H3Q8IVL6 736 aa26.08■■□□□ 1.77
SHKBP1-216ENST00000598201 KIAA0586Q9BVV6 1533 aa26.07■■□□□ 1.76
SHKBP1-216ENST00000598201 EFCAB5A4FU69 1503 aa26.04■■□□□ 1.76
SHKBP1-216ENST00000598201 FHOD3Q2V2M9 1422 aa26.03■■□□□ 1.76
SHKBP1-216ENST00000598201 DNAJC5Q9H3Z4 198 aa26■■□□□ 1.75
SHKBP1-216ENST00000598201 JPH4Q96JJ6 628 aa26■■□□□ 1.75
SHKBP1-216ENST00000598201 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.97■■□□□ 1.75
SHKBP1-216ENST00000598201 ZEB1P37275 1124 aaPredicted RBP25.97■■□□□ 1.75
SHKBP1-216ENST00000598201 IQGAP2Q13576 1575 aa25.97■■□□□ 1.75
SHKBP1-216ENST00000598201 PCF11O94913 1555 aaKnown RBP25.94■■□□□ 1.74
SHKBP1-216ENST00000598201 TIAM1Q13009 1591 aa25.93■■□□□ 1.74
SHKBP1-216ENST00000598201 SAMD9Q5K651 1589 aa25.92■■□□□ 1.74
SHKBP1-216ENST00000598201 MAP3K1Q13233 1512 aa25.92■■□□□ 1.74
SHKBP1-216ENST00000598201 SHROOM2Q13796 1616 aa25.91■■□□□ 1.74
SHKBP1-216ENST00000598201 HNRNPUL2Q1KMD3 747 aaKnown RBP25.89■■□□□ 1.73
SHKBP1-216ENST00000598201 PRG4Q92954 1404 aaPredicted RBP25.88■■□□□ 1.73
SHKBP1-216ENST00000598201 CCER1Q8TC90 406 aaPredicted RBP25.86■■□□□ 1.73
SHKBP1-216ENST00000598201 CASKIN1Q8WXD9 1431 aa25.86■■□□□ 1.73
SHKBP1-216ENST00000598201 FYCO1Q9BQS8 1478 aa25.85■■□□□ 1.73
SHKBP1-216ENST00000598201 ARHGEF11O15085 1522 aa25.84■■□□□ 1.73
SHKBP1-216ENST00000598201 UGGT2Q9NYU1 1516 aa25.84■■□□□ 1.73
SHKBP1-216ENST00000598201 FMN1Q68DA7 1419 aa25.83■■□□□ 1.73
SHKBP1-216ENST00000598201 ATP1B4Q9UN42 357 aaPredicted RBP25.83■■□□□ 1.73
SHKBP1-216ENST00000598201 LRRC9Q6ZRR7 1453 aa25.82■■□□□ 1.72
SHKBP1-216ENST00000598201 CFAP43Q8NDM7 1665 aa25.81■■□□□ 1.72
SHKBP1-216ENST00000598201 ERCC6L2Q5T890 1561 aa25.81■■□□□ 1.72
SHKBP1-216ENST00000598201 RRBP1Q9P2E9 1410 aaKnown RBP25.8■■□□□ 1.72
SHKBP1-216ENST00000598201 CARMIL2Q6F5E8 1435 aa25.78■■□□□ 1.72
SHKBP1-216ENST00000598201 RIMBP3CA6NJZ7 1639 aa25.78■■□□□ 1.72
SHKBP1-216ENST00000598201 RIMBP3BA6NNM3 1639 aa25.78■■□□□ 1.72
SHKBP1-216ENST00000598201 RIMBP3Q9UFD9 1639 aa25.78■■□□□ 1.72
SHKBP1-216ENST00000598201 DISP1Q96F81 1524 aa25.77■■□□□ 1.72
SHKBP1-216ENST00000598201 KIAA0556O60303 1618 aa25.71■■□□□ 1.71
SHKBP1-216ENST00000598201 CCNB3Q8WWL7 1395 aa25.7■■□□□ 1.7
SHKBP1-216ENST00000598201 PHLDB1Q86UU1 1377 aa25.67■■□□□ 1.7
SHKBP1-216ENST00000598201 LRRIQ1Q96JM4 1722 aa25.66■■□□□ 1.7
SHKBP1-216ENST00000598201 CYB5RLQ6IPT4 315 aa25.65■■□□□ 1.7
SHKBP1-216ENST00000598201 PTPRGP23470 1445 aa25.63■■□□□ 1.69
SHKBP1-216ENST00000598201 MTUS2Q5JR59 1369 aa25.54■■□□□ 1.68
SHKBP1-216ENST00000598201 ITGAEP38570 1179 aa25.52■■□□□ 1.68
SHKBP1-216ENST00000598201 HECW1Q76N89 1606 aa25.51■■□□□ 1.67
SHKBP1-216ENST00000598201 CCDC18Q5T9S5 1454 aa25.49■■□□□ 1.67
SHKBP1-216ENST00000598201 MAGI3Q5TCQ9 1506 aa25.48■■□□□ 1.67
SHKBP1-216ENST00000598201 EPRSP07814 1512 aaKnown RBP25.47■■□□□ 1.67
SHKBP1-216ENST00000598201 FAM50AQ14320 339 aaKnown RBP25.46■■□□□ 1.67
SHKBP1-216ENST00000598201 UACAQ9BZF9 1416 aa25.46■■□□□ 1.67
SHKBP1-216ENST00000598201 PLB1Q6P1J6 1458 aa25.45■■□□□ 1.67
SHKBP1-216ENST00000598201 EHBP1L1Q8N3D4 1523 aa25.44■■□□□ 1.66
SHKBP1-216ENST00000598201 CDK13Q14004 1512 aaKnown RBP25.43■■□□□ 1.66
SHKBP1-216ENST00000598201 NCOA2Q15596 1464 aa25.43■■□□□ 1.66
SHKBP1-216ENST00000598201 ARID3CA6NKF2 412 aa25.41■■□□□ 1.66
SHKBP1-216ENST00000598201 FGD6Q6ZV73 1430 aa25.41■■□□□ 1.66
SHKBP1-216ENST00000598201 ABCA8O94911 1581 aa25.4■■□□□ 1.66
SHKBP1-216ENST00000598201 SUPT6HQ7KZ85 1726 aaKnown RBP25.39■■□□□ 1.65
SHKBP1-216ENST00000598201 UHRF1BP1LA0JNW5 1464 aa25.38■■□□□ 1.65
SHKBP1-216ENST00000598201 ADCY10Q96PN6 1610 aa25.38■■□□□ 1.65
SHKBP1-216ENST00000598201 ABCC2Q92887 1545 aa25.38■■□□□ 1.65
SHKBP1-216ENST00000598201 DHX57Q6P158 1386 aaKnown RBP25.37■■□□□ 1.65
SHKBP1-216ENST00000598201 NUP153P49790 1475 aaKnown RBP25.37■■□□□ 1.65
SHKBP1-216ENST00000598201 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.37■■□□□ 1.65
SHKBP1-216ENST00000598201 RAPGEF6Q8TEU7 1601 aa25.36■■□□□ 1.65
SHKBP1-216ENST00000598201 MYOM3Q5VTT5 1437 aa25.34■■□□□ 1.65
SHKBP1-216ENST00000598201 NPM1P06748 294 aaKnown RBP eCLIP25.33■■□□□ 1.65
SHKBP1-216ENST00000598201 RAB3GAP2Q9H2M9 1393 aa25.31■■□□□ 1.64
SHKBP1-216ENST00000598201 SETD5Q9C0A6 1442 aa25.28■■□□□ 1.64
SHKBP1-216ENST00000598201 KDM5BQ9UGL1 1544 aa25.27■■□□□ 1.64
SHKBP1-216ENST00000598201 CLSPNQ9HAW4 1339 aa25.24■■□□□ 1.63
SHKBP1-216ENST00000598201 ATP10BO94823 1461 aa25.23■■□□□ 1.63
SHKBP1-216ENST00000598201 PTPRKQ15262 1439 aa25.22■■□□□ 1.63
SHKBP1-216ENST00000598201 ZCCHC11Q5TAX3 1644 aaKnown RBP25.21■■□□□ 1.63
SHKBP1-216ENST00000598201 PTPN23Q9H3S7 1636 aa25.21■■□□□ 1.63
SHKBP1-216ENST00000598201 TCOF1Q13428 1488 aaKnown RBP25.16■■□□□ 1.62
SHKBP1-216ENST00000598201 CDK11AQ9UQ88 783 aaPredicted RBP25.16■■□□□ 1.62
SHKBP1-216ENST00000598201 MAPKBP1O60336 1514 aa25.14■■□□□ 1.61
SHKBP1-216ENST00000598201 ASXL2Q76L83 1435 aa25.13■■□□□ 1.61
SHKBP1-216ENST00000598201 MIA2Q96PC5 1412 aa25.12■■□□□ 1.61
SHKBP1-216ENST00000598201 TROQ12816 1431 aaPredicted RBP25.12■■□□□ 1.61
SHKBP1-216ENST00000598201 PLEKHD1A6NEE1 506 aa25.09■■□□□ 1.61
SHKBP1-216ENST00000598201 HFM1A2PYH4 1435 aa25.08■■□□□ 1.6
SHKBP1-216ENST00000598201 WDR7Q9Y4E6 1490 aa25.05■■□□□ 1.6
SHKBP1-216ENST00000598201 KCNH8Q96L42 1107 aa25.03■■□□□ 1.6
SHKBP1-216ENST00000598201 NAIPQ13075 1403 aa25.03■■□□□ 1.6
SHKBP1-216ENST00000598201 KIF14Q15058 1648 aa25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms