RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 RAPGEF2Q9Y4G8 1499 aa32.84■■■□□ 2.85
SHKBP1-214ENST00000597396 CSRNP3Q8WYN3 585 aa32.76■■■□□ 2.83
SHKBP1-214ENST00000597396 TRHP20396 242 aaPredicted RBP32.75■■■□□ 2.83
SHKBP1-214ENST00000597396 FAM9AQ8IZU1 332 aaPredicted RBP32.75■■■□□ 2.83
SHKBP1-214ENST00000597396 SHROOM2Q13796 1616 aa32.74■■■□□ 2.83
SHKBP1-214ENST00000597396 PRXQ9BXM0 1461 aa32.74■■■□□ 2.83
SHKBP1-214ENST00000597396 KIAA0586Q9BVV6 1533 aa32.72■■■□□ 2.83
SHKBP1-214ENST00000597396 CTTNBP2Q8WZ74 1663 aa32.64■■■□□ 2.82
SHKBP1-214ENST00000597396 JPH4Q96JJ6 628 aa32.63■■■□□ 2.81
SHKBP1-214ENST00000597396 IQGAP2Q13576 1575 aa32.62■■■□□ 2.81
SHKBP1-214ENST00000597396 ERCC6L2Q5T890 1561 aa32.6■■■□□ 2.81
SHKBP1-214ENST00000597396 PRG4Q92954 1404 aaPredicted RBP32.58■■■□□ 2.81
SHKBP1-214ENST00000597396 KIF21BO75037 1637 aa32.55■■■□□ 2.8
SHKBP1-214ENST00000597396 UGGT2Q9NYU1 1516 aa32.41■■■□□ 2.78
SHKBP1-214ENST00000597396 CARMIL2Q6F5E8 1435 aa32.39■■■□□ 2.78
SHKBP1-214ENST00000597396 GOLGA3Q08378 1498 aa32.35■■■□□ 2.77
SHKBP1-214ENST00000597396 EHMT2Q96KQ7 1210 aa32.33■■■□□ 2.77
SHKBP1-214ENST00000597396 DISP1Q96F81 1524 aa32.31■■■□□ 2.76
SHKBP1-214ENST00000597396 KIAA0556O60303 1618 aa32.3■■■□□ 2.76
SHKBP1-214ENST00000597396 UBTFP17480 764 aaKnown RBP32.25■■■□□ 2.75
SHKBP1-214ENST00000597396 TNIKQ9UKE5 1360 aa32.24■■■□□ 2.75
SHKBP1-214ENST00000597396 TTBK1Q5TCY1 1321 aaPredicted RBP32.22■■■□□ 2.75
SHKBP1-214ENST00000597396 PTPRGP23470 1445 aa32.21■■■□□ 2.75
SHKBP1-214ENST00000597396 RANGAP1P46060 587 aaPredicted RBP32.14■■■□□ 2.74
SHKBP1-214ENST00000597396 SAMD9Q5K651 1589 aa32.14■■■□□ 2.74
SHKBP1-214ENST00000597396 ADCY10Q96PN6 1610 aa32.09■■■□□ 2.73
SHKBP1-214ENST00000597396 P3H3Q8IVL6 736 aa32.06■■■□□ 2.72
SHKBP1-214ENST00000597396 EFCAB5A4FU69 1503 aa32.04■■■□□ 2.72
SHKBP1-214ENST00000597396 UACAQ9BZF9 1416 aa32■■■□□ 2.71
SHKBP1-214ENST00000597396 NPM1P06748 294 aaKnown RBP eCLIP31.97■■■□□ 2.71
SHKBP1-214ENST00000597396 ABCC2Q92887 1545 aa31.96■■■□□ 2.71
SHKBP1-214ENST00000597396 UHRF1BP1LA0JNW5 1464 aa31.96■■■□□ 2.71
SHKBP1-214ENST00000597396 FHOD3Q2V2M9 1422 aa31.94■■■□□ 2.7
SHKBP1-214ENST00000597396 PLB1Q6P1J6 1458 aa31.91■■■□□ 2.7
SHKBP1-214ENST00000597396 ABCA8O94911 1581 aa31.91■■■□□ 2.7
SHKBP1-214ENST00000597396 ARHGAP35Q9NRY4 1499 aa31.87■■■□□ 2.69
SHKBP1-214ENST00000597396 MAPKBP1O60336 1514 aa31.83■■■□□ 2.69
SHKBP1-214ENST00000597396 RAPGEF6Q8TEU7 1601 aa31.82■■■□□ 2.69
SHKBP1-214ENST00000597396 KIF13AQ9H1H9 1805 aa31.82■■■□□ 2.68
SHKBP1-214ENST00000597396 ZCCHC11Q5TAX3 1644 aaKnown RBP31.82■■■□□ 2.68
SHKBP1-214ENST00000597396 KDM5BQ9UGL1 1544 aa31.8■■■□□ 2.68
SHKBP1-214ENST00000597396 FAM69CQ0P6D2 419 aa31.78■■■□□ 2.68
SHKBP1-214ENST00000597396 LOC105371045A0A1W2PR82 267 aa31.77■■■□□ 2.68
SHKBP1-214ENST00000597396 AEBP2Q6ZN18 517 aaPredicted RBP31.76■■■□□ 2.67
SHKBP1-214ENST00000597396 ABCC10Q5T3U5 1492 aa31.76■■■□□ 2.67
SHKBP1-214ENST00000597396 CLIP1P30622 1438 aa31.75■■■□□ 2.67
SHKBP1-214ENST00000597396 FMN1Q68DA7 1419 aa31.72■■■□□ 2.67
SHKBP1-214ENST00000597396 ASXL2Q76L83 1435 aa31.68■■■□□ 2.66
SHKBP1-214ENST00000597396 DIP2BQ9P265 1576 aa31.66■■■□□ 2.66
SHKBP1-214ENST00000597396 ARID3CA6NKF2 412 aa31.66■■■□□ 2.66
SHKBP1-214ENST00000597396 CEP162Q5TB80 1403 aa31.66■■■□□ 2.66
SHKBP1-214ENST00000597396 NUP153P49790 1475 aaKnown RBP31.64■■■□□ 2.66
SHKBP1-214ENST00000597396 ATP10BO94823 1461 aa31.62■■■□□ 2.65
SHKBP1-214ENST00000597396 HECW1Q76N89 1606 aa31.6■■■□□ 2.65
SHKBP1-214ENST00000597396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.57■■■□□ 2.64
SHKBP1-214ENST00000597396 HNRNPUL2Q1KMD3 747 aaKnown RBP31.57■■■□□ 2.64
SHKBP1-214ENST00000597396 ATP1B4Q9UN42 357 aaPredicted RBP31.56■■■□□ 2.64
SHKBP1-214ENST00000597396 WDR7Q9Y4E6 1490 aa31.56■■■□□ 2.64
SHKBP1-214ENST00000597396 PCF11O94913 1555 aaKnown RBP31.53■■■□□ 2.64
SHKBP1-214ENST00000597396 EPRSP07814 1512 aaKnown RBP31.49■■■□□ 2.63
SHKBP1-214ENST00000597396 TSPOAP1O95153 1857 aa31.49■■■□□ 2.63
SHKBP1-214ENST00000597396 GLI2P10070 1586 aa31.48■■■□□ 2.63
SHKBP1-214ENST00000597396 CDK13Q14004 1512 aaKnown RBP31.48■■■□□ 2.63
SHKBP1-214ENST00000597396 CASKIN1Q8WXD9 1431 aa31.48■■■□□ 2.63
SHKBP1-214ENST00000597396 LRRIQ1Q96JM4 1722 aa31.46■■■□□ 2.63
SHKBP1-214ENST00000597396 KCNH8Q96L42 1107 aa31.43■■■□□ 2.62
SHKBP1-214ENST00000597396 FYCO1Q9BQS8 1478 aa31.43■■■□□ 2.62
SHKBP1-214ENST00000597396 KDM6BO15054 1643 aa31.39■■■□□ 2.62
SHKBP1-214ENST00000597396 MAP3K4Q9Y6R4 1608 aa31.38■■■□□ 2.61
SHKBP1-214ENST00000597396 PLEKHD1A6NEE1 506 aa31.38■■■□□ 2.61
SHKBP1-214ENST00000597396 CCDC18Q5T9S5 1454 aa31.37■■■□□ 2.61
SHKBP1-214ENST00000597396 CFAP43Q8NDM7 1665 aa31.36■■■□□ 2.61
SHKBP1-214ENST00000597396 CDK11AQ9UQ88 783 aaPredicted RBP31.31■■■□□ 2.6
SHKBP1-214ENST00000597396 PPRC1Q5VV67 1664 aaKnown RBP31.31■■■□□ 2.6
SHKBP1-214ENST00000597396 ABCA9Q8IUA7 1624 aa31.28■■■□□ 2.6
SHKBP1-214ENST00000597396 VPS8Q8N3P4 1428 aa31.26■■■□□ 2.6
SHKBP1-214ENST00000597396 CD109Q6YHK3 1445 aa31.24■■■□□ 2.59
SHKBP1-214ENST00000597396 TROQ12816 1431 aaPredicted RBP31.21■■■□□ 2.59
SHKBP1-214ENST00000597396 TEX14Q8IWB6 1497 aa31.21■■■□□ 2.59
SHKBP1-214ENST00000597396 KIF14Q15058 1648 aa31.19■■■□□ 2.58
SHKBP1-214ENST00000597396 MAGI3Q5TCQ9 1506 aa31.17■■■□□ 2.58
SHKBP1-214ENST00000597396 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.17■■■□□ 2.58
SHKBP1-214ENST00000597396 TTC37Q6PGP7 1564 aa31.16■■■□□ 2.58
SHKBP1-214ENST00000597396 KDM4FA0A1W2PPD8 638 aa31.09■■■□□ 2.57
SHKBP1-214ENST00000597396 MYO5CQ9NQX4 1742 aa31.09■■■□□ 2.57
SHKBP1-214ENST00000597396 TIAM1Q13009 1591 aa31.06■■■□□ 2.56
SHKBP1-214ENST00000597396 MTUS2Q5JR59 1369 aa31.05■■■□□ 2.56
SHKBP1-214ENST00000597396 COL17A1Q9UMD9 1497 aaPredicted RBP31.03■■■□□ 2.56
SHKBP1-214ENST00000597396 EHBP1L1Q8N3D4 1523 aa31.03■■■□□ 2.56
SHKBP1-214ENST00000597396 CFAP74Q9C0B2 1584 aa31■■■□□ 2.55
SHKBP1-214ENST00000597396 NEO1Q92859 1461 aa30.97■■■□□ 2.55
SHKBP1-214ENST00000597396 MAP3K1Q13233 1512 aa30.96■■■□□ 2.55
SHKBP1-214ENST00000597396 PLCH2O75038 1416 aa30.96■■■□□ 2.55
SHKBP1-214ENST00000597396 APLP2Q06481 763 aa30.95■■■□□ 2.55
SHKBP1-214ENST00000597396 CDC42BPAQ5VT25 1732 aa30.95■■■□□ 2.54
SHKBP1-214ENST00000597396 FANCAO15360 1455 aa30.95■■■□□ 2.54
SHKBP1-214ENST00000597396 ARAP3Q8WWN8 1544 aa30.93■■■□□ 2.54
SHKBP1-214ENST00000597396 PHLDB1Q86UU1 1377 aa30.93■■■□□ 2.54
SHKBP1-214ENST00000597396 CDC42BPBQ9Y5S2 1711 aa30.93■■■□□ 2.54
SHKBP1-214ENST00000597396 PREX2Q70Z35 1606 aa30.93■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms