RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 NISCHQ9Y2I1 1504 aa47.34■■■■■ 5.17
SHKBP1-214ENST00000597396 CCDC180Q9P1Z9 1646 aa42.09■■■■■ 4.33
SHKBP1-214ENST00000597396 ABCC9O60706 1549 aa41.2■■■■■ 4.19
SHKBP1-214ENST00000597396 DCAF8L2P0C7V8 631 aa39.51■■■■□ 3.92
SHKBP1-214ENST00000597396 RB1CC1Q8TDY2 1594 aa39.49■■■■□ 3.91
SHKBP1-214ENST00000597396 ZCCHC6Q5VYS8 1495 aaKnown RBP39.48■■■■□ 3.91
SHKBP1-214ENST00000597396 NACADO15069 1562 aa39.46■■■■□ 3.91
SHKBP1-214ENST00000597396 MYO15BQ96JP2 1530 aa39.24■■■■□ 3.87
SHKBP1-214ENST00000597396 DCAF1Q9Y4B6 1507 aa39.16■■■■□ 3.86
SHKBP1-214ENST00000597396 UNC13AQ9UPW8 1703 aa38.69■■■■□ 3.78
SHKBP1-214ENST00000597396 DNAJC5BQ9UF47 199 aa38.57■■■■□ 3.76
SHKBP1-214ENST00000597396 SCRIBQ14160 1630 aa38.41■■■■□ 3.74
SHKBP1-214ENST00000597396 PABPN1Q86U42 306 aaKnown RBP eCLIP38.39■■■■□ 3.74
SHKBP1-214ENST00000597396 BICRAQ9NZM4 1560 aa38.24■■■■□ 3.71
SHKBP1-214ENST00000597396 SHROOM4Q9ULL8 1493 aa37.84■■■■□ 3.65
SHKBP1-214ENST00000597396 EIF4G1Q04637 1599 aaKnown RBP37.24■■■■□ 3.55
SHKBP1-214ENST00000597396 CC2D2AQ9P2K1 1620 aa37.18■■■■□ 3.54
SHKBP1-214ENST00000597396 CECR2Q9BXF3 1484 aa37.1■■■■□ 3.53
SHKBP1-214ENST00000597396 SMARCA4P51532 1647 aa36.74■■■■□ 3.47
SHKBP1-214ENST00000597396 BAZ1AQ9NRL2 1556 aaPredicted RBP36.71■■■■□ 3.47
SHKBP1-214ENST00000597396 MROH2BQ7Z745 1585 aa36.49■■■■□ 3.43
SHKBP1-214ENST00000597396 SMARCA2P51531 1590 aa36.44■■■■□ 3.42
SHKBP1-214ENST00000597396 ATAD2BQ9ULI0 1458 aa36.43■■■■□ 3.42
SHKBP1-214ENST00000597396 NCAPD3P42695 1498 aa36.36■■■■□ 3.41
SHKBP1-214ENST00000597396 PEG3Q9GZU2 1588 aa36.33■■■■□ 3.41
SHKBP1-214ENST00000597396 HMGXB3Q12766 1538 aa36.25■■■■□ 3.39
SHKBP1-214ENST00000597396 BAZ1BQ9UIG0 1483 aaKnown RBP36.18■■■■□ 3.38
SHKBP1-214ENST00000597396 WIZO95785 1651 aa36.16■■■■□ 3.38
SHKBP1-214ENST00000597396 RSF1Q96T23 1441 aaPredicted RBP36.11■■■■□ 3.37
SHKBP1-214ENST00000597396 TOP2AP11388 1531 aaKnown RBP35.77■■■■□ 3.32
SHKBP1-214ENST00000597396 ERCC6Q03468 1493 aa35.59■■■■□ 3.29
SHKBP1-214ENST00000597396 NESP48681 1621 aa35.46■■■■□ 3.27
SHKBP1-214ENST00000597396 CUX2O14529 1486 aa35.45■■■■□ 3.27
SHKBP1-214ENST00000597396 LAMC3Q9Y6N6 1575 aa35.44■■■■□ 3.26
SHKBP1-214ENST00000597396 SUPT5HO00267 1087 aaKnown RBP35.41■■■■□ 3.26
SHKBP1-214ENST00000597396 DNAJC5Q9H3Z4 198 aa35.38■■■■□ 3.25
SHKBP1-214ENST00000597396 CADPSQ9ULU8 1353 aa35.32■■■■□ 3.24
SHKBP1-214ENST00000597396 CCDC88BA6NC98 1476 aa35.31■■■■□ 3.24
SHKBP1-214ENST00000597396 PDS5BQ9NTI5 1447 aa35.16■■■■□ 3.22
SHKBP1-214ENST00000597396 KIF21AQ7Z4S6 1674 aa35.15■■■■□ 3.22
SHKBP1-214ENST00000597396 CFTRP13569 1480 aa35.15■■■■□ 3.22
SHKBP1-214ENST00000597396 PRDM2Q13029 1718 aa35.09■■■■□ 3.21
SHKBP1-214ENST00000597396 THOC2Q8NI27 1593 aaKnown RBP34.98■■■■□ 3.19
SHKBP1-214ENST00000597396 FANCD2Q9BXW9 1451 aa34.95■■■■□ 3.19
SHKBP1-214ENST00000597396 CEP164Q9UPV0 1460 aa34.91■■■■□ 3.18
SHKBP1-214ENST00000597396 MRC2Q9UBG0 1479 aa34.8■■■■□ 3.16
SHKBP1-214ENST00000597396 WDR62O43379 1518 aa34.68■■■■□ 3.14
SHKBP1-214ENST00000597396 URB2Q14146 1524 aaKnown RBP34.58■■■■□ 3.13
SHKBP1-214ENST00000597396 ABCC8Q09428 1581 aa34.44■■■■□ 3.1
SHKBP1-214ENST00000597396 DNMBPQ6XZF7 1577 aa34.42■■■■□ 3.1
SHKBP1-214ENST00000597396 TOPBP1Q92547 1522 aa34.42■■■■□ 3.1
SHKBP1-214ENST00000597396 CUX1P39880 1505 aa34.23■■■■□ 3.07
SHKBP1-214ENST00000597396 IFT140Q96RY7 1462 aa34.14■■■■□ 3.06
SHKBP1-214ENST00000597396 POLA1P09884 1462 aaPredicted RBP34.13■■■■□ 3.05
SHKBP1-214ENST00000597396 FGD5Q6ZNL6 1462 aa34.09■■■■□ 3.05
SHKBP1-214ENST00000597396 WRNQ14191 1432 aaPredicted RBP eCLIP34.09■■■■□ 3.05
SHKBP1-214ENST00000597396 TARBP1Q13395 1621 aaKnown RBP34.04■■■■□ 3.04
SHKBP1-214ENST00000597396 BIVM-ERCC5R4GMW8 1640 aa34.04■■■■□ 3.04
SHKBP1-214ENST00000597396 SYNJ1O43426 1573 aa34.02■■■■□ 3.04
SHKBP1-214ENST00000597396 TOP2BQ02880 1626 aa34.01■■■■□ 3.04
SHKBP1-214ENST00000597396 SOGA1O94964 1423 aa33.99■■■■□ 3.03
SHKBP1-214ENST00000597396 RAD54L2Q9Y4B4 1467 aa33.98■■■■□ 3.03
SHKBP1-214ENST00000597396 ZNF608Q9ULD9 1512 aaPredicted RBP33.96■■■■□ 3.03
SHKBP1-214ENST00000597396 TRIM41Q8WV44 630 aa33.93■■■■□ 3.02
SHKBP1-214ENST00000597396 EIF4G3O43432 1585 aaKnown RBP33.9■■■■□ 3.02
SHKBP1-214ENST00000597396 OSCARQ8IYS5 282 aa33.88■■■■□ 3.01
SHKBP1-214ENST00000597396 WDR97A6NE52 1622 aa33.86■■■■□ 3.01
SHKBP1-214ENST00000597396 AQRO60306 1485 aaKnown RBP eCLIP33.8■■■■□ 3
SHKBP1-214ENST00000597396 TDRD9Q8NDG6 1382 aaKnown RBP33.76■■■■□ 3
SHKBP1-214ENST00000597396 ABCA10Q8WWZ4 1543 aa33.75■■■□□ 2.99
SHKBP1-214ENST00000597396 ABCA5Q8WWZ7 1642 aa33.64■■■□□ 2.98
SHKBP1-214ENST00000597396 PBRM1Q86U86 1689 aa33.64■■■□□ 2.98
SHKBP1-214ENST00000597396 GAPVD1Q14C86 1478 aa33.62■■■□□ 2.97
SHKBP1-214ENST00000597396 GRIN2BQ13224 1484 aa33.58■■■□□ 2.97
SHKBP1-214ENST00000597396 SNAPC4Q5SXM2 1469 aa33.52■■■□□ 2.96
SHKBP1-214ENST00000597396 CHD1O14646 1710 aa33.5■■■□□ 2.95
SHKBP1-214ENST00000597396 MAGI1Q96QZ7 1491 aaPredicted RBP33.48■■■□□ 2.95
SHKBP1-214ENST00000597396 FBLN2P98095 1184 aa33.39■■■□□ 2.94
SHKBP1-214ENST00000597396 RIMBP3CA6NJZ7 1639 aa33.39■■■□□ 2.93
SHKBP1-214ENST00000597396 RIMBP3BA6NNM3 1639 aa33.39■■■□□ 2.93
SHKBP1-214ENST00000597396 RIMBP3Q9UFD9 1639 aa33.39■■■□□ 2.93
SHKBP1-214ENST00000597396 ERICH3Q5RHP9 1530 aa33.38■■■□□ 2.93
SHKBP1-214ENST00000597396 KIF27Q86VH2 1401 aa33.36■■■□□ 2.93
SHKBP1-214ENST00000597396 SYNJ2O15056 1496 aa33.34■■■□□ 2.93
SHKBP1-214ENST00000597396 ADAMTS12P58397 1594 aa33.31■■■□□ 2.92
SHKBP1-214ENST00000597396 CHMP7Q8WUX9 453 aaPredicted RBP33.31■■■□□ 2.92
SHKBP1-214ENST00000597396 ARHGEF11O15085 1522 aa33.31■■■□□ 2.92
SHKBP1-214ENST00000597396 FHAD1B1AJZ9 1412 aa33.22■■■□□ 2.91
SHKBP1-214ENST00000597396 CUL7Q14999 1698 aa33.17■■■□□ 2.9
SHKBP1-214ENST00000597396 GRIN2AQ12879 1464 aa33.15■■■□□ 2.9
SHKBP1-214ENST00000597396 IGF1RP08069 1367 aa33.14■■■□□ 2.9
SHKBP1-214ENST00000597396 CHIC1Q5VXU3 224 aa33.12■■■□□ 2.89
SHKBP1-214ENST00000597396 CYB5RLQ6IPT4 315 aa33.11■■■□□ 2.89
SHKBP1-214ENST00000597396 RUSC2Q8N2Y8 1516 aa33.11■■■□□ 2.89
SHKBP1-214ENST00000597396 CLASP1Q7Z460 1538 aa33.03■■■□□ 2.88
SHKBP1-214ENST00000597396 CEP170Q5SW79 1584 aa33■■■□□ 2.87
SHKBP1-214ENST00000597396 CARMIL1Q5VZK9 1371 aa32.99■■■□□ 2.87
SHKBP1-214ENST00000597396 ARAP1Q96P48 1450 aa32.98■■■□□ 2.87
SHKBP1-214ENST00000597396 NUP160Q12769 1436 aa32.96■■■□□ 2.87
SHKBP1-214ENST00000597396 EEA1Q15075 1411 aa32.85■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms