RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 ERCC6L2Q5T890 1561 aa30.23■■■□□ 2.43
SHKBP1-204ENST00000594862 KIAA0586Q9BVV6 1533 aa30.22■■■□□ 2.43
SHKBP1-204ENST00000594862 PRG4Q92954 1404 aaPredicted RBP30.19■■■□□ 2.42
SHKBP1-204ENST00000594862 JPH4Q96JJ6 628 aa30.18■■■□□ 2.42
SHKBP1-204ENST00000594862 RAPGEF2Q9Y4G8 1499 aa30.1■■■□□ 2.41
SHKBP1-204ENST00000594862 IQGAP2Q13576 1575 aa30.03■■■□□ 2.4
SHKBP1-204ENST00000594862 CARMIL2Q6F5E8 1435 aa29.95■■■□□ 2.38
SHKBP1-204ENST00000594862 PRXQ9BXM0 1461 aa29.9■■■□□ 2.38
SHKBP1-204ENST00000594862 EEA1Q15075 1411 aa29.89■■■□□ 2.38
SHKBP1-204ENST00000594862 CTTNBP2Q8WZ74 1663 aa29.88■■■□□ 2.37
SHKBP1-204ENST00000594862 UGGT2Q9NYU1 1516 aa29.86■■■□□ 2.37
SHKBP1-204ENST00000594862 TNIKQ9UKE5 1360 aa29.82■■■□□ 2.36
SHKBP1-204ENST00000594862 PTPRGP23470 1445 aa29.8■■■□□ 2.36
SHKBP1-204ENST00000594862 ADCY10Q96PN6 1610 aa29.79■■■□□ 2.36
SHKBP1-204ENST00000594862 DISP1Q96F81 1524 aa29.77■■■□□ 2.36
SHKBP1-204ENST00000594862 NPM1P06748 294 aaKnown RBP eCLIP29.77■■■□□ 2.36
SHKBP1-204ENST00000594862 CSRNP3Q8WYN3 585 aa29.75■■■□□ 2.35
SHKBP1-204ENST00000594862 MAPKBP1O60336 1514 aa29.74■■■□□ 2.35
SHKBP1-204ENST00000594862 KIAA0556O60303 1618 aa29.74■■■□□ 2.35
SHKBP1-204ENST00000594862 GOLGA3Q08378 1498 aa29.72■■■□□ 2.35
SHKBP1-204ENST00000594862 UHRF1BP1LA0JNW5 1464 aa29.66■■■□□ 2.34
SHKBP1-204ENST00000594862 AEBP2Q6ZN18 517 aaPredicted RBP29.64■■■□□ 2.34
SHKBP1-204ENST00000594862 ABCC2Q92887 1545 aa29.62■■■□□ 2.33
SHKBP1-204ENST00000594862 UACAQ9BZF9 1416 aa29.62■■■□□ 2.33
SHKBP1-204ENST00000594862 KIF13AQ9H1H9 1805 aa29.61■■■□□ 2.33
SHKBP1-204ENST00000594862 CHIC1Q5VXU3 224 aa29.6■■■□□ 2.33
SHKBP1-204ENST00000594862 TTBK1Q5TCY1 1321 aaPredicted RBP29.59■■■□□ 2.33
SHKBP1-204ENST00000594862 ABCC10Q5T3U5 1492 aa29.58■■■□□ 2.33
SHKBP1-204ENST00000594862 KIF21BO75037 1637 aa29.56■■■□□ 2.32
SHKBP1-204ENST00000594862 DIP2BQ9P265 1576 aa29.54■■■□□ 2.32
SHKBP1-204ENST00000594862 FAM9AQ8IZU1 332 aaPredicted RBP29.48■■■□□ 2.31
SHKBP1-204ENST00000594862 KDM5BQ9UGL1 1544 aa29.48■■■□□ 2.31
SHKBP1-204ENST00000594862 PLB1Q6P1J6 1458 aa29.47■■■□□ 2.31
SHKBP1-204ENST00000594862 SAMD9Q5K651 1589 aa29.45■■■□□ 2.31
SHKBP1-204ENST00000594862 FAM69CQ0P6D2 419 aa29.45■■■□□ 2.31
SHKBP1-204ENST00000594862 ASXL2Q76L83 1435 aa29.42■■■□□ 2.3
SHKBP1-204ENST00000594862 ABCA8O94911 1581 aa29.42■■■□□ 2.3
SHKBP1-204ENST00000594862 ZCCHC11Q5TAX3 1644 aaKnown RBP29.41■■■□□ 2.3
SHKBP1-204ENST00000594862 GLI2P10070 1586 aa29.35■■■□□ 2.29
SHKBP1-204ENST00000594862 EFCAB5A4FU69 1503 aa29.33■■■□□ 2.29
SHKBP1-204ENST00000594862 WDR7Q9Y4E6 1490 aa29.27■■■□□ 2.28
SHKBP1-204ENST00000594862 EPRSP07814 1512 aaKnown RBP29.25■■■□□ 2.27
SHKBP1-204ENST00000594862 P3H3Q8IVL6 736 aa29.25■■■□□ 2.27
SHKBP1-204ENST00000594862 RAPGEF6Q8TEU7 1601 aa29.23■■■□□ 2.27
SHKBP1-204ENST00000594862 TSPOAP1O95153 1857 aa29.22■■■□□ 2.27
SHKBP1-204ENST00000594862 UBTFP17480 764 aaKnown RBP29.19■■■□□ 2.26
SHKBP1-204ENST00000594862 MAP3K4Q9Y6R4 1608 aa29.19■■■□□ 2.26
SHKBP1-204ENST00000594862 FHOD3Q2V2M9 1422 aa29.17■■■□□ 2.26
SHKBP1-204ENST00000594862 KDM6BO15054 1643 aa29.16■■■□□ 2.26
SHKBP1-204ENST00000594862 RANGAP1P46060 587 aaPredicted RBP29.14■■■□□ 2.26
SHKBP1-204ENST00000594862 PPRC1Q5VV67 1664 aaKnown RBP29.13■■■□□ 2.25
SHKBP1-204ENST00000594862 TEX14Q8IWB6 1497 aa29.13■■■□□ 2.25
SHKBP1-204ENST00000594862 ATP10BO94823 1461 aa29.11■■■□□ 2.25
SHKBP1-204ENST00000594862 CFAP43Q8NDM7 1665 aa29.1■■■□□ 2.25
SHKBP1-204ENST00000594862 NUP153P49790 1475 aaKnown RBP29.07■■■□□ 2.24
SHKBP1-204ENST00000594862 FMN1Q68DA7 1419 aa29.03■■■□□ 2.24
SHKBP1-204ENST00000594862 EHMT2Q96KQ7 1210 aa29.03■■■□□ 2.24
SHKBP1-204ENST00000594862 MAGI3Q5TCQ9 1506 aa29■■■□□ 2.23
SHKBP1-204ENST00000594862 ARHGAP35Q9NRY4 1499 aa29■■■□□ 2.23
SHKBP1-204ENST00000594862 CD109Q6YHK3 1445 aa28.99■■■□□ 2.23
SHKBP1-204ENST00000594862 KDM4FA0A1W2PPD8 638 aa28.98■■■□□ 2.23
SHKBP1-204ENST00000594862 ARID3CA6NKF2 412 aa28.98■■■□□ 2.23
SHKBP1-204ENST00000594862 KCNH8Q96L42 1107 aa28.98■■■□□ 2.23
SHKBP1-204ENST00000594862 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.96■■■□□ 2.23
SHKBP1-204ENST00000594862 HNRNPUL2Q1KMD3 747 aaKnown RBP28.96■■■□□ 2.23
SHKBP1-204ENST00000594862 ABCA9Q8IUA7 1624 aa28.95■■■□□ 2.23
SHKBP1-204ENST00000594862 HECW1Q76N89 1606 aa28.94■■■□□ 2.22
SHKBP1-204ENST00000594862 PLEKHD1A6NEE1 506 aa28.86■■■□□ 2.21
SHKBP1-204ENST00000594862 PHLDB1Q86UU1 1377 aa28.82■■■□□ 2.2
SHKBP1-204ENST00000594862 CDK13Q14004 1512 aaKnown RBP28.79■■■□□ 2.2
SHKBP1-204ENST00000594862 COL17A1Q9UMD9 1497 aaPredicted RBP28.79■■■□□ 2.2
SHKBP1-204ENST00000594862 NEO1Q92859 1461 aa28.77■■■□□ 2.2
SHKBP1-204ENST00000594862 CLIP1P30622 1438 aa28.77■■■□□ 2.2
SHKBP1-204ENST00000594862 ARAP3Q8WWN8 1544 aa28.76■■■□□ 2.19
SHKBP1-204ENST00000594862 CDK11AQ9UQ88 783 aaPredicted RBP28.76■■■□□ 2.19
SHKBP1-204ENST00000594862 CASKIN1Q8WXD9 1431 aa28.73■■■□□ 2.19
SHKBP1-204ENST00000594862 ATP1B4Q9UN42 357 aaPredicted RBP28.73■■■□□ 2.19
SHKBP1-204ENST00000594862 CFAP74Q9C0B2 1584 aa28.72■■■□□ 2.19
SHKBP1-204ENST00000594862 CCDC18Q5T9S5 1454 aa28.72■■■□□ 2.19
SHKBP1-204ENST00000594862 PCF11O94913 1555 aaKnown RBP28.71■■■□□ 2.19
SHKBP1-204ENST00000594862 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.7■■■□□ 2.19
SHKBP1-204ENST00000594862 FYCO1Q9BQS8 1478 aa28.68■■■□□ 2.18
SHKBP1-204ENST00000594862 TTC37Q6PGP7 1564 aa28.67■■■□□ 2.18
SHKBP1-204ENST00000594862 KIF14Q15058 1648 aa28.65■■■□□ 2.18
SHKBP1-204ENST00000594862 LRRIQ1Q96JM4 1722 aa28.64■■■□□ 2.18
SHKBP1-204ENST00000594862 TROQ12816 1431 aaPredicted RBP28.63■■■□□ 2.17
SHKBP1-204ENST00000594862 FANCAO15360 1455 aa28.6■■■□□ 2.17
SHKBP1-204ENST00000594862 ADGRL1O94910 1474 aa28.6■■■□□ 2.17
SHKBP1-204ENST00000594862 MYO5CQ9NQX4 1742 aa28.57■■■□□ 2.16
SHKBP1-204ENST00000594862 PLCH2O75038 1416 aa28.55■■■□□ 2.16
SHKBP1-204ENST00000594862 CEP162Q5TB80 1403 aa28.55■■■□□ 2.16
SHKBP1-204ENST00000594862 AKNAQ7Z591 1439 aa28.54■■■□□ 2.16
SHKBP1-204ENST00000594862 DENND4BO75064 1496 aaPredicted RBP28.52■■■□□ 2.16
SHKBP1-204ENST00000594862 FRMPD1Q5SYB0 1578 aa28.5■■■□□ 2.15
SHKBP1-204ENST00000594862 RICTORQ6R327 1708 aa28.47■■■□□ 2.15
SHKBP1-204ENST00000594862 RAPGEF3O95398 923 aa28.45■■■□□ 2.14
SHKBP1-204ENST00000594862 EFCAB2Q5VUJ9 269 aa28.44■■■□□ 2.14
SHKBP1-204ENST00000594862 ZMYM4Q5VZL5 1548 aa28.43■■■□□ 2.14
SHKBP1-204ENST00000594862 ARHGAP5Q13017 1502 aa28.42■■■□□ 2.14
SHKBP1-204ENST00000594862 PREX2Q70Z35 1606 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms