RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 NISCHQ9Y2I1 1504 aa43.55■■■■■ 4.56
SHKBP1-204ENST00000594862 CCDC180Q9P1Z9 1646 aa38.97■■■■□ 3.83
SHKBP1-204ENST00000594862 ABCC9O60706 1549 aa38.19■■■■□ 3.7
SHKBP1-204ENST00000594862 RB1CC1Q8TDY2 1594 aa36.78■■■■□ 3.48
SHKBP1-204ENST00000594862 NACADO15069 1562 aa36.67■■■■□ 3.46
SHKBP1-204ENST00000594862 MYO15BQ96JP2 1530 aa36.41■■■■□ 3.42
SHKBP1-204ENST00000594862 DCAF8L2P0C7V8 631 aa36.34■■■■□ 3.41
SHKBP1-204ENST00000594862 ZCCHC6Q5VYS8 1495 aaKnown RBP36.24■■■■□ 3.39
SHKBP1-204ENST00000594862 DCAF1Q9Y4B6 1507 aa36.12■■■■□ 3.37
SHKBP1-204ENST00000594862 DNAJC5BQ9UF47 199 aa36.05■■■■□ 3.36
SHKBP1-204ENST00000594862 UNC13AQ9UPW8 1703 aa35.85■■■■□ 3.33
SHKBP1-204ENST00000594862 BICRAQ9NZM4 1560 aa35.55■■■■□ 3.28
SHKBP1-204ENST00000594862 PABPN1Q86U42 306 aaKnown RBP eCLIP35.55■■■■□ 3.28
SHKBP1-204ENST00000594862 SHROOM4Q9ULL8 1493 aa35.39■■■■□ 3.26
SHKBP1-204ENST00000594862 SCRIBQ14160 1630 aa35.39■■■■□ 3.26
SHKBP1-204ENST00000594862 EIF4G1Q04637 1599 aaKnown RBP34.7■■■■□ 3.14
SHKBP1-204ENST00000594862 CC2D2AQ9P2K1 1620 aa34.59■■■■□ 3.13
SHKBP1-204ENST00000594862 CECR2Q9BXF3 1484 aa34.4■■■■□ 3.1
SHKBP1-204ENST00000594862 SMARCA4P51532 1647 aa33.87■■■■□ 3.01
SHKBP1-204ENST00000594862 BAZ1AQ9NRL2 1556 aaPredicted RBP33.85■■■■□ 3.01
SHKBP1-204ENST00000594862 NCAPD3P42695 1498 aa33.78■■■■□ 3
SHKBP1-204ENST00000594862 SMARCA2P51531 1590 aa33.77■■■■□ 3
SHKBP1-204ENST00000594862 ATAD2BQ9ULI0 1458 aa33.72■■■□□ 2.99
SHKBP1-204ENST00000594862 HMGXB3Q12766 1538 aa33.65■■■□□ 2.98
SHKBP1-204ENST00000594862 PEG3Q9GZU2 1588 aa33.6■■■□□ 2.97
SHKBP1-204ENST00000594862 MROH2BQ7Z745 1585 aa33.5■■■□□ 2.95
SHKBP1-204ENST00000594862 BAZ1BQ9UIG0 1483 aaKnown RBP33.48■■■□□ 2.95
SHKBP1-204ENST00000594862 DNAJC5Q9H3Z4 198 aa33.23■■■□□ 2.91
SHKBP1-204ENST00000594862 WIZO95785 1651 aa33.13■■■□□ 2.89
SHKBP1-204ENST00000594862 ERCC6Q03468 1493 aa33.03■■■□□ 2.88
SHKBP1-204ENST00000594862 RSF1Q96T23 1441 aaPredicted RBP33.02■■■□□ 2.88
SHKBP1-204ENST00000594862 LAMC3Q9Y6N6 1575 aa32.99■■■□□ 2.87
SHKBP1-204ENST00000594862 NESP48681 1621 aa32.94■■■□□ 2.86
SHKBP1-204ENST00000594862 CUX2O14529 1486 aa32.92■■■□□ 2.86
SHKBP1-204ENST00000594862 TOP2AP11388 1531 aaKnown RBP32.85■■■□□ 2.85
SHKBP1-204ENST00000594862 CADPSQ9ULU8 1353 aa32.76■■■□□ 2.83
SHKBP1-204ENST00000594862 PDS5BQ9NTI5 1447 aa32.76■■■□□ 2.83
SHKBP1-204ENST00000594862 KIF21AQ7Z4S6 1674 aa32.62■■■□□ 2.81
SHKBP1-204ENST00000594862 THOC2Q8NI27 1593 aaKnown RBP32.62■■■□□ 2.81
SHKBP1-204ENST00000594862 CFTRP13569 1480 aa32.52■■■□□ 2.8
SHKBP1-204ENST00000594862 MRC2Q9UBG0 1479 aa32.42■■■□□ 2.78
SHKBP1-204ENST00000594862 CEP164Q9UPV0 1460 aa32.42■■■□□ 2.78
SHKBP1-204ENST00000594862 FANCD2Q9BXW9 1451 aa32.39■■■□□ 2.78
SHKBP1-204ENST00000594862 CCDC88BA6NC98 1476 aa32.37■■■□□ 2.77
SHKBP1-204ENST00000594862 PRDM2Q13029 1718 aa32.35■■■□□ 2.77
SHKBP1-204ENST00000594862 WDR62O43379 1518 aa32.33■■■□□ 2.77
SHKBP1-204ENST00000594862 URB2Q14146 1524 aaKnown RBP32.05■■■□□ 2.72
SHKBP1-204ENST00000594862 ABCC8Q09428 1581 aa31.93■■■□□ 2.7
SHKBP1-204ENST00000594862 SUPT5HO00267 1087 aaKnown RBP31.88■■■□□ 2.69
SHKBP1-204ENST00000594862 TOPBP1Q92547 1522 aa31.84■■■□□ 2.69
SHKBP1-204ENST00000594862 DNMBPQ6XZF7 1577 aa31.83■■■□□ 2.69
SHKBP1-204ENST00000594862 IFT140Q96RY7 1462 aa31.75■■■□□ 2.67
SHKBP1-204ENST00000594862 TRIM41Q8WV44 630 aa31.61■■■□□ 2.65
SHKBP1-204ENST00000594862 POLA1P09884 1462 aaPredicted RBP31.54■■■□□ 2.64
SHKBP1-204ENST00000594862 TARBP1Q13395 1621 aaKnown RBP31.52■■■□□ 2.64
SHKBP1-204ENST00000594862 ZNF608Q9ULD9 1512 aaPredicted RBP31.51■■■□□ 2.63
SHKBP1-204ENST00000594862 EIF4G3O43432 1585 aaKnown RBP31.48■■■□□ 2.63
SHKBP1-204ENST00000594862 CUX1P39880 1505 aa31.46■■■□□ 2.63
SHKBP1-204ENST00000594862 FGD5Q6ZNL6 1462 aa31.43■■■□□ 2.62
SHKBP1-204ENST00000594862 OSCARQ8IYS5 282 aa31.41■■■□□ 2.62
SHKBP1-204ENST00000594862 WDR97A6NE52 1622 aa31.41■■■□□ 2.62
SHKBP1-204ENST00000594862 SOGA1O94964 1423 aa31.39■■■□□ 2.62
SHKBP1-204ENST00000594862 RAD54L2Q9Y4B4 1467 aa31.33■■■□□ 2.61
SHKBP1-204ENST00000594862 AQRO60306 1485 aaKnown RBP eCLIP31.29■■■□□ 2.6
SHKBP1-204ENST00000594862 BIVM-ERCC5R4GMW8 1640 aa31.2■■■□□ 2.59
SHKBP1-204ENST00000594862 WRNQ14191 1432 aaPredicted RBP eCLIP31.2■■■□□ 2.59
SHKBP1-204ENST00000594862 TDRD9Q8NDG6 1382 aaKnown RBP31.19■■■□□ 2.58
SHKBP1-204ENST00000594862 TOP2BQ02880 1626 aa31.19■■■□□ 2.58
SHKBP1-204ENST00000594862 ABCA10Q8WWZ4 1543 aa31.14■■■□□ 2.58
SHKBP1-204ENST00000594862 GRIN2BQ13224 1484 aa31.12■■■□□ 2.57
SHKBP1-204ENST00000594862 CHD1O14646 1710 aa31.12■■■□□ 2.57
SHKBP1-204ENST00000594862 SYNJ1O43426 1573 aa31.1■■■□□ 2.57
SHKBP1-204ENST00000594862 MAGI1Q96QZ7 1491 aaPredicted RBP31.1■■■□□ 2.57
SHKBP1-204ENST00000594862 SNAPC4Q5SXM2 1469 aa31.07■■■□□ 2.56
SHKBP1-204ENST00000594862 GAPVD1Q14C86 1478 aa31.06■■■□□ 2.56
SHKBP1-204ENST00000594862 ABCA5Q8WWZ7 1642 aa31.06■■■□□ 2.56
SHKBP1-204ENST00000594862 PBRM1Q86U86 1689 aa31.04■■■□□ 2.56
SHKBP1-204ENST00000594862 RIMBP3CA6NJZ7 1639 aa31.02■■■□□ 2.56
SHKBP1-204ENST00000594862 RIMBP3BA6NNM3 1639 aa31.02■■■□□ 2.56
SHKBP1-204ENST00000594862 RIMBP3Q9UFD9 1639 aa31.02■■■□□ 2.56
SHKBP1-204ENST00000594862 FBLN2P98095 1184 aa30.97■■■□□ 2.55
SHKBP1-204ENST00000594862 SYNJ2O15056 1496 aa30.95■■■□□ 2.55
SHKBP1-204ENST00000594862 CHMP7Q8WUX9 453 aaPredicted RBP30.9■■■□□ 2.54
SHKBP1-204ENST00000594862 ARHGEF11O15085 1522 aa30.88■■■□□ 2.53
SHKBP1-204ENST00000594862 ERICH3Q5RHP9 1530 aa30.8■■■□□ 2.52
SHKBP1-204ENST00000594862 CLASP1Q7Z460 1538 aa30.79■■■□□ 2.52
SHKBP1-204ENST00000594862 ADAMTS12P58397 1594 aa30.79■■■□□ 2.52
SHKBP1-204ENST00000594862 FHAD1B1AJZ9 1412 aa30.71■■■□□ 2.51
SHKBP1-204ENST00000594862 GRIN2AQ12879 1464 aa30.7■■■□□ 2.51
SHKBP1-204ENST00000594862 CYB5RLQ6IPT4 315 aa30.69■■■□□ 2.5
SHKBP1-204ENST00000594862 KIF27Q86VH2 1401 aa30.6■■■□□ 2.49
SHKBP1-204ENST00000594862 ARAP1Q96P48 1450 aa30.57■■■□□ 2.48
SHKBP1-204ENST00000594862 NUP160Q12769 1436 aa30.57■■■□□ 2.48
SHKBP1-204ENST00000594862 CEP170Q5SW79 1584 aa30.52■■■□□ 2.48
SHKBP1-204ENST00000594862 CUL7Q14999 1698 aa30.51■■■□□ 2.47
SHKBP1-204ENST00000594862 IGF1RP08069 1367 aa30.41■■■□□ 2.46
SHKBP1-204ENST00000594862 SHROOM2Q13796 1616 aa30.4■■■□□ 2.46
SHKBP1-204ENST00000594862 TRHP20396 242 aaPredicted RBP30.38■■■□□ 2.45
SHKBP1-204ENST00000594862 RUSC2Q8N2Y8 1516 aa30.34■■■□□ 2.45
SHKBP1-204ENST00000594862 CARMIL1Q5VZK9 1371 aa30.26■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms