RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 CEP162Q5TB80 1403 aa35.61■■■■□ 3.29
ATG4D-209ENST00000588857 ARHGEF11O15085 1522 aa35.56■■■■□ 3.28
ATG4D-209ENST00000588857 CTTNBP2Q8WZ74 1663 aa35.54■■■■□ 3.28
ATG4D-209ENST00000588857 RIMBP3CA6NJZ7 1639 aa35.53■■■■□ 3.28
ATG4D-209ENST00000588857 RIMBP3BA6NNM3 1639 aa35.53■■■■□ 3.28
ATG4D-209ENST00000588857 RIMBP3Q9UFD9 1639 aa35.53■■■■□ 3.28
ATG4D-209ENST00000588857 CLASP1Q7Z460 1538 aa35.51■■■■□ 3.27
ATG4D-209ENST00000588857 GRIN2AQ12879 1464 aa35.5■■■■□ 3.27
ATG4D-209ENST00000588857 CLIP1P30622 1438 aa35.46■■■■□ 3.27
ATG4D-209ENST00000588857 RANGAP1P46060 587 aaPredicted RBP35.43■■■■□ 3.26
ATG4D-209ENST00000588857 NUP160Q12769 1436 aa35.38■■■■□ 3.25
ATG4D-209ENST00000588857 CYB5RLQ6IPT4 315 aa35.36■■■■□ 3.25
ATG4D-209ENST00000588857 CEP170Q5SW79 1584 aa35.3■■■■□ 3.24
ATG4D-209ENST00000588857 ARAP1Q96P48 1450 aa35.27■■■■□ 3.24
ATG4D-209ENST00000588857 IQGAP2Q13576 1575 aa35.25■■■■□ 3.23
ATG4D-209ENST00000588857 KIAA0586Q9BVV6 1533 aa35.21■■■■□ 3.23
ATG4D-209ENST00000588857 ARHGAP35Q9NRY4 1499 aa35.2■■■■□ 3.23
ATG4D-209ENST00000588857 EFCAB5A4FU69 1503 aa35.17■■■■□ 3.22
ATG4D-209ENST00000588857 JPH4Q96JJ6 628 aa35.1■■■■□ 3.21
ATG4D-209ENST00000588857 SAMD9Q5K651 1589 aa35.08■■■■□ 3.21
ATG4D-209ENST00000588857 VPS8Q8N3P4 1428 aa35.07■■■■□ 3.2
ATG4D-209ENST00000588857 UGGT2Q9NYU1 1516 aa35.05■■■■□ 3.2
ATG4D-209ENST00000588857 SHROOM2Q13796 1616 aa35.04■■■■□ 3.2
ATG4D-209ENST00000588857 P3H3Q8IVL6 736 aa35.02■■■■□ 3.2
ATG4D-209ENST00000588857 ERCC6L2Q5T890 1561 aa35.01■■■■□ 3.2
ATG4D-209ENST00000588857 PRG4Q92954 1404 aaPredicted RBP34.98■■■■□ 3.19
ATG4D-209ENST00000588857 FHOD3Q2V2M9 1422 aa34.97■■■■□ 3.19
ATG4D-209ENST00000588857 KIAA0556O60303 1618 aa34.88■■■■□ 3.17
ATG4D-209ENST00000588857 DISP1Q96F81 1524 aa34.87■■■■□ 3.17
ATG4D-209ENST00000588857 FMN1Q68DA7 1419 aa34.85■■■■□ 3.17
ATG4D-209ENST00000588857 CARMIL2Q6F5E8 1435 aa34.82■■■■□ 3.17
ATG4D-209ENST00000588857 APLP2Q06481 763 aa34.79■■■■□ 3.16
ATG4D-209ENST00000588857 PCF11O94913 1555 aaKnown RBP34.75■■■■□ 3.15
ATG4D-209ENST00000588857 CASKIN1Q8WXD9 1431 aa34.7■■■■□ 3.15
ATG4D-209ENST00000588857 FYCO1Q9BQS8 1478 aa34.7■■■■□ 3.15
ATG4D-209ENST00000588857 TRHP20396 242 aaPredicted RBP34.7■■■■□ 3.14
ATG4D-209ENST00000588857 PPARGC1BQ86YN6 1023 aaKnown RBP34.66■■■■□ 3.14
ATG4D-209ENST00000588857 ATP1B4Q9UN42 357 aaPredicted RBP34.64■■■■□ 3.14
ATG4D-209ENST00000588857 TTBK1Q5TCY1 1321 aaPredicted RBP34.63■■■■□ 3.13
ATG4D-209ENST00000588857 PTPRGP23470 1445 aa34.56■■■■□ 3.12
ATG4D-209ENST00000588857 MAP3K1Q13233 1512 aa34.56■■■■□ 3.12
ATG4D-209ENST00000588857 HECW1Q76N89 1606 aa34.55■■■■□ 3.12
ATG4D-209ENST00000588857 TIAM1Q13009 1591 aa34.54■■■■□ 3.12
ATG4D-209ENST00000588857 CFAP43Q8NDM7 1665 aa34.53■■■■□ 3.12
ATG4D-209ENST00000588857 RAPGEF6Q8TEU7 1601 aa34.51■■■■□ 3.12
ATG4D-209ENST00000588857 LRRIQ1Q96JM4 1722 aa34.49■■■■□ 3.11
ATG4D-209ENST00000588857 NPM1P06748 294 aaKnown RBP eCLIP34.46■■■■□ 3.11
ATG4D-209ENST00000588857 CCDC18Q5T9S5 1454 aa34.44■■■■□ 3.1
ATG4D-209ENST00000588857 PLB1Q6P1J6 1458 aa34.43■■■■□ 3.1
ATG4D-209ENST00000588857 KANK4Q5T7N3 995 aaPredicted RBP34.4■■■■□ 3.1
ATG4D-209ENST00000588857 ABCA8O94911 1581 aa34.4■■■■□ 3.1
ATG4D-209ENST00000588857 ADCY10Q96PN6 1610 aa34.39■■■■□ 3.1
ATG4D-209ENST00000588857 EPRSP07814 1512 aaKnown RBP34.38■■■■□ 3.09
ATG4D-209ENST00000588857 TRIM26Q12899 539 aaPredicted RBP34.37■■■■□ 3.09
ATG4D-209ENST00000588857 NUP153P49790 1475 aaKnown RBP34.37■■■■□ 3.09
ATG4D-209ENST00000588857 LRRC9Q6ZRR7 1453 aa34.36■■■■□ 3.09
ATG4D-209ENST00000588857 UACAQ9BZF9 1416 aa34.3■■■■□ 3.08
ATG4D-209ENST00000588857 CDK13Q14004 1512 aaKnown RBP34.3■■■■□ 3.08
ATG4D-209ENST00000588857 ARID3CA6NKF2 412 aa34.28■■■■□ 3.08
ATG4D-209ENST00000588857 UHRF1BP1LA0JNW5 1464 aa34.26■■■■□ 3.08
ATG4D-209ENST00000588857 MTUS2Q5JR59 1369 aa34.24■■■■□ 3.07
ATG4D-209ENST00000588857 MAPKBP1O60336 1514 aa34.24■■■■□ 3.07
ATG4D-209ENST00000588857 ABCC2Q92887 1545 aa34.23■■■■□ 3.07
ATG4D-209ENST00000588857 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.22■■■■□ 3.07
ATG4D-209ENST00000588857 HNRNPUL2Q1KMD3 747 aaKnown RBP34.22■■■■□ 3.07
ATG4D-209ENST00000588857 PCGF6Q9BYE7 350 aa34.21■■■■□ 3.07
ATG4D-209ENST00000588857 EHBP1L1Q8N3D4 1523 aa34.2■■■■□ 3.07
ATG4D-209ENST00000588857 CDK11AQ9UQ88 783 aaPredicted RBP34.18■■■■□ 3.06
ATG4D-209ENST00000588857 ABCC10Q5T3U5 1492 aa34.16■■■■□ 3.06
ATG4D-209ENST00000588857 FAM69CQ0P6D2 419 aa34.16■■■■□ 3.06
ATG4D-209ENST00000588857 MAGI3Q5TCQ9 1506 aa34.15■■■■□ 3.06
ATG4D-209ENST00000588857 ATP10BO94823 1461 aa34.14■■■■□ 3.06
ATG4D-209ENST00000588857 SUPT6HQ7KZ85 1726 aaKnown RBP34.13■■■■□ 3.05
ATG4D-209ENST00000588857 KDM5BQ9UGL1 1544 aa34.1■■■■□ 3.05
ATG4D-209ENST00000588857 ASXL2Q76L83 1435 aa34.06■■■■□ 3.04
ATG4D-209ENST00000588857 KIF13AQ9H1H9 1805 aa34.02■■■■□ 3.04
ATG4D-209ENST00000588857 DIP2BQ9P265 1576 aa34.02■■■■□ 3.04
ATG4D-209ENST00000588857 PLEKHD1A6NEE1 506 aa34.02■■■■□ 3.04
ATG4D-209ENST00000588857 NCOA2Q15596 1464 aa34.02■■■■□ 3.04
ATG4D-209ENST00000588857 TROQ12816 1431 aaPredicted RBP34.01■■■■□ 3.04
ATG4D-209ENST00000588857 ZCCHC11Q5TAX3 1644 aaKnown RBP33.99■■■■□ 3.03
ATG4D-209ENST00000588857 PHLDB1Q86UU1 1377 aa33.99■■■■□ 3.03
ATG4D-209ENST00000588857 RRBP1Q9P2E9 1410 aaKnown RBP33.93■■■■□ 3.02
ATG4D-209ENST00000588857 CCNB3Q8WWL7 1395 aa33.88■■■■□ 3.01
ATG4D-209ENST00000588857 KIF14Q15058 1648 aa33.88■■■■□ 3.01
ATG4D-209ENST00000588857 MYOM3Q5VTT5 1437 aa33.86■■■■□ 3.01
ATG4D-209ENST00000588857 GLI2P10070 1586 aa33.83■■■■□ 3.01
ATG4D-209ENST00000588857 WDR7Q9Y4E6 1490 aa33.83■■■■□ 3.01
ATG4D-209ENST00000588857 FGD6Q6ZV73 1430 aa33.82■■■■□ 3
ATG4D-209ENST00000588857 ITSN2Q9NZM3 1697 aa33.76■■■■□ 3
ATG4D-209ENST00000588857 KCNH8Q96L42 1107 aa33.75■■■□□ 2.99
ATG4D-209ENST00000588857 FAM50AQ14320 339 aaKnown RBP33.73■■■□□ 2.99
ATG4D-209ENST00000588857 MIA2Q96PC5 1412 aa33.72■■■□□ 2.99
ATG4D-209ENST00000588857 PTPN23Q9H3S7 1636 aa33.71■■■□□ 2.99
ATG4D-209ENST00000588857 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.7■■■□□ 2.98
ATG4D-209ENST00000588857 CDC42BPAQ5VT25 1732 aa33.69■■■□□ 2.98
ATG4D-209ENST00000588857 GPATCH8Q9UKJ3 1502 aaKnown RBP33.67■■■□□ 2.98
ATG4D-209ENST00000588857 TSPOAP1O95153 1857 aa33.66■■■□□ 2.98
ATG4D-209ENST00000588857 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.64■■■□□ 2.98
ATG4D-209ENST00000588857 TTC37Q6PGP7 1564 aa33.62■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms