RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 NISCHQ9Y2I1 1504 aa51.31■■■■■ 5.8
ATG4D-209ENST00000588857 CCDC180Q9P1Z9 1646 aa45.04■■■■■ 4.8
ATG4D-209ENST00000588857 ABCC9O60706 1549 aa44.18■■■■■ 4.66
ATG4D-209ENST00000588857 ZCCHC6Q5VYS8 1495 aaKnown RBP43■■■■■ 4.47
ATG4D-209ENST00000588857 DCAF8L2P0C7V8 631 aa42.51■■■■■ 4.4
ATG4D-209ENST00000588857 DCAF1Q9Y4B6 1507 aa42.46■■■■■ 4.39
ATG4D-209ENST00000588857 RB1CC1Q8TDY2 1594 aa42.35■■■■■ 4.37
ATG4D-209ENST00000588857 NACADO15069 1562 aa42.28■■■■■ 4.36
ATG4D-209ENST00000588857 MYO15BQ96JP2 1530 aa42.12■■■■■ 4.33
ATG4D-209ENST00000588857 SHROOM4Q9ULL8 1493 aa41.5■■■■■ 4.23
ATG4D-209ENST00000588857 PABPN1Q86U42 306 aaKnown RBP eCLIP41.34■■■■■ 4.21
ATG4D-209ENST00000588857 SCRIBQ14160 1630 aa41.29■■■■■ 4.2
ATG4D-209ENST00000588857 UNC13AQ9UPW8 1703 aa41.24■■■■■ 4.19
ATG4D-209ENST00000588857 BICRAQ9NZM4 1560 aa41.09■■■■■ 4.17
ATG4D-209ENST00000588857 DNAJC5BQ9UF47 199 aa40.84■■■■■ 4.13
ATG4D-209ENST00000588857 EIF4G1Q04637 1599 aaKnown RBP40.02■■■■■ 4
ATG4D-209ENST00000588857 CC2D2AQ9P2K1 1620 aa39.89■■■■□ 3.98
ATG4D-209ENST00000588857 CECR2Q9BXF3 1484 aa39.84■■■■□ 3.97
ATG4D-209ENST00000588857 SUPT5HO00267 1087 aaKnown RBP39.74■■■■□ 3.95
ATG4D-209ENST00000588857 BAZ1AQ9NRL2 1556 aaPredicted RBP39.69■■■■□ 3.94
ATG4D-209ENST00000588857 RSF1Q96T23 1441 aaPredicted RBP39.61■■■■□ 3.93
ATG4D-209ENST00000588857 MROH2BQ7Z745 1585 aa39.6■■■■□ 3.93
ATG4D-209ENST00000588857 SMARCA4P51532 1647 aa39.56■■■■□ 3.92
ATG4D-209ENST00000588857 WIZO95785 1651 aa39.29■■■■□ 3.88
ATG4D-209ENST00000588857 NCAPD3P42695 1498 aa39.1■■■■□ 3.85
ATG4D-209ENST00000588857 PEG3Q9GZU2 1588 aa39.08■■■■□ 3.85
ATG4D-209ENST00000588857 ATAD2BQ9ULI0 1458 aa39.06■■■■□ 3.84
ATG4D-209ENST00000588857 SMARCA2P51531 1590 aa39.01■■■■□ 3.84
ATG4D-209ENST00000588857 TOP2AP11388 1531 aaKnown RBP38.88■■■■□ 3.82
ATG4D-209ENST00000588857 HMGXB3Q12766 1538 aa38.8■■■■□ 3.8
ATG4D-209ENST00000588857 BAZ1BQ9UIG0 1483 aaKnown RBP38.77■■■■□ 3.8
ATG4D-209ENST00000588857 CCDC88BA6NC98 1476 aa38.44■■■■□ 3.74
ATG4D-209ENST00000588857 NESP48681 1621 aa38.17■■■■□ 3.7
ATG4D-209ENST00000588857 ERCC6Q03468 1493 aa38.09■■■■□ 3.69
ATG4D-209ENST00000588857 LAMC3Q9Y6N6 1575 aa38■■■■□ 3.67
ATG4D-209ENST00000588857 CADPSQ9ULU8 1353 aa37.96■■■■□ 3.67
ATG4D-209ENST00000588857 PDS5BQ9NTI5 1447 aa37.85■■■■□ 3.65
ATG4D-209ENST00000588857 CHIC1Q5VXU3 224 aa37.79■■■■□ 3.64
ATG4D-209ENST00000588857 CUX2O14529 1486 aa37.75■■■■□ 3.63
ATG4D-209ENST00000588857 CFTRP13569 1480 aa37.74■■■■□ 3.63
ATG4D-209ENST00000588857 PRDM2Q13029 1718 aa37.66■■■■□ 3.62
ATG4D-209ENST00000588857 KIF21AQ7Z4S6 1674 aa37.58■■■■□ 3.61
ATG4D-209ENST00000588857 THOC2Q8NI27 1593 aaKnown RBP37.54■■■■□ 3.6
ATG4D-209ENST00000588857 ABCC8Q09428 1581 aa37.49■■■■□ 3.59
ATG4D-209ENST00000588857 FANCD2Q9BXW9 1451 aa37.48■■■■□ 3.59
ATG4D-209ENST00000588857 TRIM41Q8WV44 630 aa37.44■■■■□ 3.58
ATG4D-209ENST00000588857 CEP164Q9UPV0 1460 aa37.42■■■■□ 3.58
ATG4D-209ENST00000588857 MRC2Q9UBG0 1479 aa37.42■■■■□ 3.58
ATG4D-209ENST00000588857 WRNQ14191 1432 aaPredicted RBP eCLIP37.32■■■■□ 3.57
ATG4D-209ENST00000588857 WDR62O43379 1518 aa37.27■■■■□ 3.56
ATG4D-209ENST00000588857 SYNJ1O43426 1573 aa37.18■■■■□ 3.54
ATG4D-209ENST00000588857 TOP2BQ02880 1626 aa37.11■■■■□ 3.53
ATG4D-209ENST00000588857 URB2Q14146 1524 aaKnown RBP37.1■■■■□ 3.53
ATG4D-209ENST00000588857 BIVM-ERCC5R4GMW8 1640 aa37.09■■■■□ 3.53
ATG4D-209ENST00000588857 CUX1P39880 1505 aa37.06■■■■□ 3.52
ATG4D-209ENST00000588857 DNAJC5Q9H3Z4 198 aa36.94■■■■□ 3.5
ATG4D-209ENST00000588857 DNMBPQ6XZF7 1577 aa36.91■■■■□ 3.5
ATG4D-209ENST00000588857 TOPBP1Q92547 1522 aa36.85■■■■□ 3.49
ATG4D-209ENST00000588857 FGD5Q6ZNL6 1462 aa36.74■■■■□ 3.47
ATG4D-209ENST00000588857 FAM9AQ8IZU1 332 aaPredicted RBP36.7■■■■□ 3.46
ATG4D-209ENST00000588857 IFT140Q96RY7 1462 aa36.67■■■■□ 3.46
ATG4D-209ENST00000588857 SOGA1O94964 1423 aa36.66■■■■□ 3.46
ATG4D-209ENST00000588857 POLA1P09884 1462 aaPredicted RBP36.62■■■■□ 3.45
ATG4D-209ENST00000588857 EEA1Q15075 1411 aa36.61■■■■□ 3.45
ATG4D-209ENST00000588857 RUSC2Q8N2Y8 1516 aa36.55■■■■□ 3.44
ATG4D-209ENST00000588857 ZNF608Q9ULD9 1512 aaPredicted RBP36.52■■■■□ 3.44
ATG4D-209ENST00000588857 RAD54L2Q9Y4B4 1467 aa36.47■■■■□ 3.43
ATG4D-209ENST00000588857 KIF27Q86VH2 1401 aa36.45■■■■□ 3.43
ATG4D-209ENST00000588857 ABCA10Q8WWZ4 1543 aa36.41■■■■□ 3.42
ATG4D-209ENST00000588857 TARBP1Q13395 1621 aaKnown RBP36.41■■■■□ 3.42
ATG4D-209ENST00000588857 CSRNP3Q8WYN3 585 aa36.4■■■■□ 3.42
ATG4D-209ENST00000588857 WDR97A6NE52 1622 aa36.36■■■■□ 3.41
ATG4D-209ENST00000588857 AQRO60306 1485 aaKnown RBP eCLIP36.32■■■■□ 3.413e-6■■■■□ 19.5
ATG4D-209ENST00000588857 LOC105371045A0A1W2PR82 267 aa36.32■■■■□ 3.4
ATG4D-209ENST00000588857 EIF4G3O43432 1585 aaKnown RBP36.27■■■■□ 3.4
ATG4D-209ENST00000588857 OSCARQ8IYS5 282 aa36.27■■■■□ 3.4
ATG4D-209ENST00000588857 TDRD9Q8NDG6 1382 aaKnown RBP36.26■■■■□ 3.39
ATG4D-209ENST00000588857 ABCA5Q8WWZ7 1642 aa36.17■■■■□ 3.38
ATG4D-209ENST00000588857 EHMT2Q96KQ7 1210 aa36.17■■■■□ 3.38
ATG4D-209ENST00000588857 KIF21BO75037 1637 aa36.15■■■■□ 3.38
ATG4D-209ENST00000588857 GAPVD1Q14C86 1478 aa36.11■■■■□ 3.37
ATG4D-209ENST00000588857 IGF1RP08069 1367 aa36.11■■■■□ 3.37
ATG4D-209ENST00000588857 GOLGA3Q08378 1498 aa36.07■■■■□ 3.36
ATG4D-209ENST00000588857 PRXQ9BXM0 1461 aa36.04■■■■□ 3.36
ATG4D-209ENST00000588857 ERICH3Q5RHP9 1530 aa36.01■■■■□ 3.35
ATG4D-209ENST00000588857 PBRM1Q86U86 1689 aa36■■■■□ 3.35
ATG4D-209ENST00000588857 GRIN2BQ13224 1484 aa35.98■■■■□ 3.35
ATG4D-209ENST00000588857 CUL7Q14999 1698 aa35.98■■■■□ 3.35
ATG4D-209ENST00000588857 FBLN2P98095 1184 aa35.98■■■■□ 3.35
ATG4D-209ENST00000588857 RAPGEF2Q9Y4G8 1499 aa35.97■■■■□ 3.35
ATG4D-209ENST00000588857 CARMIL1Q5VZK9 1371 aa35.95■■■■□ 3.35
ATG4D-209ENST00000588857 SNAPC4Q5SXM2 1469 aa35.93■■■■□ 3.34
ATG4D-209ENST00000588857 UBTFP17480 764 aaKnown RBP35.93■■■■□ 3.34
ATG4D-209ENST00000588857 MAGI1Q96QZ7 1491 aaPredicted RBP35.88■■■■□ 3.33
ATG4D-209ENST00000588857 CHMP7Q8WUX9 453 aaPredicted RBP35.85■■■■□ 3.33
ATG4D-209ENST00000588857 TNIKQ9UKE5 1360 aa35.84■■■■□ 3.33
ATG4D-209ENST00000588857 CHD1O14646 1710 aa35.79■■■■□ 3.32
ATG4D-209ENST00000588857 SYNJ2O15056 1496 aa35.76■■■■□ 3.32
ATG4D-209ENST00000588857 ADAMTS12P58397 1594 aa35.74■■■■□ 3.31
ATG4D-209ENST00000588857 FHAD1B1AJZ9 1412 aa35.72■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms