RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 IGF1RP08069 1367 aa22.98■■□□□ 1.27
TRAF4-215ENST00000584944 FAM9AQ8IZU1 332 aaPredicted RBP22.95■■□□□ 1.26
TRAF4-215ENST00000584944 CUL7Q14999 1698 aa22.93■■□□□ 1.26
TRAF4-215ENST00000584944 RUSC2Q8N2Y8 1516 aa22.93■■□□□ 1.26
TRAF4-215ENST00000584944 EEA1Q15075 1411 aa22.93■■□□□ 1.26
TRAF4-215ENST00000584944 CARMIL1Q5VZK9 1371 aa22.91■■□□□ 1.26
TRAF4-215ENST00000584944 CSRNP3Q8WYN3 585 aa22.88■■□□□ 1.25
TRAF4-215ENST00000584944 KIAA0586Q9BVV6 1533 aa22.85■■□□□ 1.25
TRAF4-215ENST00000584944 KIF13AQ9H1H9 1805 aa22.82■■□□□ 1.24
TRAF4-215ENST00000584944 RAPGEF2Q9Y4G8 1499 aa22.8■■□□□ 1.24
TRAF4-215ENST00000584944 NPM1P06748 294 aaKnown RBP eCLIP22.76■■□□□ 1.23
TRAF4-215ENST00000584944 AEBP2Q6ZN18 517 aaPredicted RBP22.75■■□□□ 1.23
TRAF4-215ENST00000584944 ADCY10Q96PN6 1610 aa22.74■■□□□ 1.23
TRAF4-215ENST00000584944 ABCC10Q5T3U5 1492 aa22.73■■□□□ 1.23
TRAF4-215ENST00000584944 MAPKBP1O60336 1514 aa22.72■■□□□ 1.23
TRAF4-215ENST00000584944 FAM69CQ0P6D2 419 aa22.72■■□□□ 1.23
TRAF4-215ENST00000584944 PRXQ9BXM0 1461 aa22.71■■□□□ 1.23
TRAF4-215ENST00000584944 EHMT2Q96KQ7 1210 aa22.68■■□□□ 1.22
TRAF4-215ENST00000584944 DIP2BQ9P265 1576 aa22.65■■□□□ 1.22
TRAF4-215ENST00000584944 PTPRGP23470 1445 aa22.65■■□□□ 1.22
TRAF4-215ENST00000584944 UBTFP17480 764 aaKnown RBP22.61■■□□□ 1.21
TRAF4-215ENST00000584944 CARMIL2Q6F5E8 1435 aa22.6■■□□□ 1.21
TRAF4-215ENST00000584944 TNIKQ9UKE5 1360 aa22.6■■□□□ 1.21
TRAF4-215ENST00000584944 KIF21BO75037 1637 aa22.6■■□□□ 1.21
TRAF4-215ENST00000584944 IQGAP2Q13576 1575 aa22.59■■□□□ 1.21
TRAF4-215ENST00000584944 GOLGA3Q08378 1498 aa22.56■■□□□ 1.2
TRAF4-215ENST00000584944 TTBK1Q5TCY1 1321 aaPredicted RBP22.56■■□□□ 1.2
TRAF4-215ENST00000584944 ABCC2Q92887 1545 aa22.52■■□□□ 1.2
TRAF4-215ENST00000584944 CTTNBP2Q8WZ74 1663 aa22.52■■□□□ 1.2
TRAF4-215ENST00000584944 DISP1Q96F81 1524 aa22.52■■□□□ 1.19
TRAF4-215ENST00000584944 RANGAP1P46060 587 aaPredicted RBP22.5■■□□□ 1.19
TRAF4-215ENST00000584944 UHRF1BP1LA0JNW5 1464 aa22.48■■□□□ 1.19
TRAF4-215ENST00000584944 TSPOAP1O95153 1857 aa22.48■■□□□ 1.19
TRAF4-215ENST00000584944 UACAQ9BZF9 1416 aa22.47■■□□□ 1.19
TRAF4-215ENST00000584944 UGGT2Q9NYU1 1516 aa22.47■■□□□ 1.19
TRAF4-215ENST00000584944 ASXL2Q76L83 1435 aa22.46■■□□□ 1.19
TRAF4-215ENST00000584944 KDM6BO15054 1643 aa22.46■■□□□ 1.19
TRAF4-215ENST00000584944 PLB1Q6P1J6 1458 aa22.45■■□□□ 1.18
TRAF4-215ENST00000584944 GLI2P10070 1586 aa22.41■■□□□ 1.18
TRAF4-215ENST00000584944 KDM5BQ9UGL1 1544 aa22.39■■□□□ 1.17
TRAF4-215ENST00000584944 KIAA0556O60303 1618 aa22.39■■□□□ 1.17
TRAF4-215ENST00000584944 PPRC1Q5VV67 1664 aaKnown RBP22.35■■□□□ 1.17
TRAF4-215ENST00000584944 P3H3Q8IVL6 736 aa22.33■■□□□ 1.17
TRAF4-215ENST00000584944 EPRSP07814 1512 aaKnown RBP22.32■■□□□ 1.16
TRAF4-215ENST00000584944 KDM4FA0A1W2PPD8 638 aa22.31■■□□□ 1.16
TRAF4-215ENST00000584944 ZCCHC11Q5TAX3 1644 aaKnown RBP22.31■■□□□ 1.16
TRAF4-215ENST00000584944 LOC105371045A0A1W2PR82 267 aa22.28■■□□□ 1.16
TRAF4-215ENST00000584944 MAP3K4Q9Y6R4 1608 aa22.26■■□□□ 1.15
TRAF4-215ENST00000584944 EFCAB5A4FU69 1503 aa22.25■■□□□ 1.15
TRAF4-215ENST00000584944 COL17A1Q9UMD9 1497 aaPredicted RBP22.23■■□□□ 1.15
TRAF4-215ENST00000584944 WDR7Q9Y4E6 1490 aa22.22■■□□□ 1.15
TRAF4-215ENST00000584944 ABCA8O94911 1581 aa22.21■■□□□ 1.15
TRAF4-215ENST00000584944 SAMD9Q5K651 1589 aa22.21■■□□□ 1.15
TRAF4-215ENST00000584944 TEX14Q8IWB6 1497 aa22.2■■□□□ 1.14
TRAF4-215ENST00000584944 CLIP1P30622 1438 aa22.19■■□□□ 1.14
TRAF4-215ENST00000584944 FHOD3Q2V2M9 1422 aa22.17■■□□□ 1.14
TRAF4-215ENST00000584944 ARHGAP35Q9NRY4 1499 aa22.12■■□□□ 1.13
TRAF4-215ENST00000584944 CEP162Q5TB80 1403 aa22.12■■□□□ 1.13
TRAF4-215ENST00000584944 KCNH8Q96L42 1107 aa22.11■■□□□ 1.13
TRAF4-215ENST00000584944 ATP1B4Q9UN42 357 aaPredicted RBP22.11■■□□□ 1.13
TRAF4-215ENST00000584944 FMN1Q68DA7 1419 aa22.1■■□□□ 1.13
TRAF4-215ENST00000584944 CD109Q6YHK3 1445 aa22.1■■□□□ 1.13
TRAF4-215ENST00000584944 MAGI3Q5TCQ9 1506 aa22.09■■□□□ 1.13
TRAF4-215ENST00000584944 CFAP43Q8NDM7 1665 aa22.08■■□□□ 1.13
TRAF4-215ENST00000584944 ADGRL1O94910 1474 aa22.08■■□□□ 1.12
TRAF4-215ENST00000584944 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.06■■□□□ 1.12
TRAF4-215ENST00000584944 HNRNPUL2Q1KMD3 747 aaKnown RBP22.06■■□□□ 1.12
TRAF4-215ENST00000584944 ATP10BO94823 1461 aa22.04■■□□□ 1.12
TRAF4-215ENST00000584944 ARID3CA6NKF2 412 aa22.03■■□□□ 1.12
TRAF4-215ENST00000584944 RAPGEF6Q8TEU7 1601 aa22■■□□□ 1.11
TRAF4-215ENST00000584944 HECW1Q76N89 1606 aa21.93■■□□□ 1.1
TRAF4-215ENST00000584944 ARAP3Q8WWN8 1544 aa21.92■■□□□ 1.1
TRAF4-215ENST00000584944 ABCA9Q8IUA7 1624 aa21.91■■□□□ 1.1
TRAF4-215ENST00000584944 CDK11AQ9UQ88 783 aaPredicted RBP21.9■■□□□ 1.1
TRAF4-215ENST00000584944 NUP153P49790 1475 aaKnown RBP21.9■■□□□ 1.1
TRAF4-215ENST00000584944 CASKIN1Q8WXD9 1431 aa21.89■■□□□ 1.1
TRAF4-215ENST00000584944 PHLDB1Q86UU1 1377 aa21.88■■□□□ 1.09
TRAF4-215ENST00000584944 FYCO1Q9BQS8 1478 aa21.87■■□□□ 1.09
TRAF4-215ENST00000584944 PLEKHD1A6NEE1 506 aa21.86■■□□□ 1.09
TRAF4-215ENST00000584944 PCF11O94913 1555 aaKnown RBP21.86■■□□□ 1.09
TRAF4-215ENST00000584944 APLP2Q06481 763 aa21.84■■□□□ 1.09
TRAF4-215ENST00000584944 CCDC18Q5T9S5 1454 aa21.83■■□□□ 1.08
TRAF4-215ENST00000584944 VPS8Q8N3P4 1428 aa21.82■■□□□ 1.08
TRAF4-215ENST00000584944 NEO1Q92859 1461 aa21.82■■□□□ 1.08
TRAF4-215ENST00000584944 CDK13Q14004 1512 aaKnown RBP21.8■■□□□ 1.08
TRAF4-215ENST00000584944 HECW2Q9P2P5 1572 aa21.79■■□□□ 1.08
TRAF4-215ENST00000584944 RAPGEF3O95398 923 aa21.79■■□□□ 1.08
TRAF4-215ENST00000584944 FRMPD1Q5SYB0 1578 aa21.72■■□□□ 1.07
TRAF4-215ENST00000584944 MTUS2Q5JR59 1369 aa21.7■■□□□ 1.06
TRAF4-215ENST00000584944 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.69■■□□□ 1.061e-10■□□□□ 8.2
TRAF4-215ENST00000584944 ILDR1Q86SU0 546 aaPredicted RBP21.68■■□□□ 1.06
TRAF4-215ENST00000584944 ADAMTSL3P82987 1691 aa21.68■■□□□ 1.06
TRAF4-215ENST00000584944 AKNAQ7Z591 1439 aa21.67■■□□□ 1.06
TRAF4-215ENST00000584944 DENND4BO75064 1496 aaPredicted RBP21.66■■□□□ 1.06
TRAF4-215ENST00000584944 TROQ12816 1431 aaPredicted RBP21.66■■□□□ 1.06
TRAF4-215ENST00000584944 FANCAO15360 1455 aa21.65■■□□□ 1.06
TRAF4-215ENST00000584944 PTPRMP28827 1452 aa21.64■■□□□ 1.05
TRAF4-215ENST00000584944 RICTORQ6R327 1708 aa21.63■■□□□ 1.05
TRAF4-215ENST00000584944 LRRIQ1Q96JM4 1722 aa21.63■■□□□ 1.05
TRAF4-215ENST00000584944 TTC37Q6PGP7 1564 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms