RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 NISCHQ9Y2I1 1504 aa32.8■■■□□ 2.84
TRAF4-215ENST00000584944 ABCC9O60706 1549 aa29.45■■■□□ 2.31
TRAF4-215ENST00000584944 CCDC180Q9P1Z9 1646 aa29.42■■■□□ 2.3
TRAF4-215ENST00000584944 RB1CC1Q8TDY2 1594 aa28.02■■■□□ 2.08
TRAF4-215ENST00000584944 NACADO15069 1562 aa27.84■■■□□ 2.05
TRAF4-215ENST00000584944 DNAJC5BQ9UF47 199 aa27.73■■■□□ 2.03
TRAF4-215ENST00000584944 DCAF8L2P0C7V8 631 aa27.68■■■□□ 2.02
TRAF4-215ENST00000584944 MYO15BQ96JP2 1530 aa27.47■■□□□ 1.99
TRAF4-215ENST00000584944 PABPN1Q86U42 306 aaKnown RBP eCLIP27.44■■□□□ 1.98
TRAF4-215ENST00000584944 UNC13AQ9UPW8 1703 aa27.39■■□□□ 1.98
TRAF4-215ENST00000584944 ZCCHC6Q5VYS8 1495 aaKnown RBP27.28■■□□□ 1.96
TRAF4-215ENST00000584944 BICRAQ9NZM4 1560 aa27.24■■□□□ 1.95
TRAF4-215ENST00000584944 DCAF1Q9Y4B6 1507 aa27.1■■□□□ 1.93
TRAF4-215ENST00000584944 SHROOM4Q9ULL8 1493 aa26.85■■□□□ 1.89
TRAF4-215ENST00000584944 SCRIBQ14160 1630 aa26.79■■□□□ 1.88
TRAF4-215ENST00000584944 CC2D2AQ9P2K1 1620 aa26.61■■□□□ 1.85
TRAF4-215ENST00000584944 CECR2Q9BXF3 1484 aa26.55■■□□□ 1.84
TRAF4-215ENST00000584944 EIF4G1Q04637 1599 aaKnown RBP26.54■■□□□ 1.84
TRAF4-215ENST00000584944 NCAPD3P42695 1498 aa25.72■■□□□ 1.71
TRAF4-215ENST00000584944 ATAD2BQ9ULI0 1458 aa25.63■■□□□ 1.69
TRAF4-215ENST00000584944 SMARCA4P51532 1647 aa25.57■■□□□ 1.68
TRAF4-215ENST00000584944 SMARCA2P51531 1590 aa25.54■■□□□ 1.68
TRAF4-215ENST00000584944 HMGXB3Q12766 1538 aa25.5■■□□□ 1.67
TRAF4-215ENST00000584944 DNAJC5Q9H3Z4 198 aa25.48■■□□□ 1.67
TRAF4-215ENST00000584944 BAZ1AQ9NRL2 1556 aaPredicted RBP25.44■■□□□ 1.66
TRAF4-215ENST00000584944 ERCC6Q03468 1493 aa25.42■■□□□ 1.66
TRAF4-215ENST00000584944 CUX2O14529 1486 aa25.41■■□□□ 1.66
TRAF4-215ENST00000584944 BAZ1BQ9UIG0 1483 aaKnown RBP25.35■■□□□ 1.65
TRAF4-215ENST00000584944 PEG3Q9GZU2 1588 aa25.35■■□□□ 1.65
TRAF4-215ENST00000584944 NESP48681 1621 aa25.3■■□□□ 1.64
TRAF4-215ENST00000584944 MROH2BQ7Z745 1585 aa25.27■■□□□ 1.64
TRAF4-215ENST00000584944 LAMC3Q9Y6N6 1575 aa25.12■■□□□ 1.61
TRAF4-215ENST00000584944 THOC2Q8NI27 1593 aaKnown RBP25.05■■□□□ 1.6
TRAF4-215ENST00000584944 RSF1Q96T23 1441 aaPredicted RBP25.03■■□□□ 1.6
TRAF4-215ENST00000584944 PDS5BQ9NTI5 1447 aa24.98■■□□□ 1.59
TRAF4-215ENST00000584944 KIF21AQ7Z4S6 1674 aa24.96■■□□□ 1.59
TRAF4-215ENST00000584944 WIZO95785 1651 aa24.94■■□□□ 1.58
TRAF4-215ENST00000584944 CADPSQ9ULU8 1353 aa24.93■■□□□ 1.58
TRAF4-215ENST00000584944 SUPT5HO00267 1087 aaKnown RBP24.82■■□□□ 1.56
TRAF4-215ENST00000584944 MRC2Q9UBG0 1479 aa24.76■■□□□ 1.55
TRAF4-215ENST00000584944 TOP2AP11388 1531 aaKnown RBP24.73■■□□□ 1.55
TRAF4-215ENST00000584944 WDR62O43379 1518 aa24.71■■□□□ 1.55
TRAF4-215ENST00000584944 CFTRP13569 1480 aa24.64■■□□□ 1.54
TRAF4-215ENST00000584944 CEP164Q9UPV0 1460 aa24.64■■□□□ 1.54
TRAF4-215ENST00000584944 FANCD2Q9BXW9 1451 aa24.63■■□□□ 1.53
TRAF4-215ENST00000584944 URB2Q14146 1524 aaKnown RBP24.44■■□□□ 1.5
TRAF4-215ENST00000584944 CCDC88BA6NC98 1476 aa24.44■■□□□ 1.5
TRAF4-215ENST00000584944 PRDM2Q13029 1718 aa24.35■■□□□ 1.49
TRAF4-215ENST00000584944 TRIM41Q8WV44 630 aa24.3■■□□□ 1.48
TRAF4-215ENST00000584944 OSCARQ8IYS5 282 aa24.27■■□□□ 1.48
TRAF4-215ENST00000584944 IFT140Q96RY7 1462 aa24.18■■□□□ 1.46
TRAF4-215ENST00000584944 TOPBP1Q92547 1522 aa24.17■■□□□ 1.46
TRAF4-215ENST00000584944 ZNF608Q9ULD9 1512 aaPredicted RBP24.14■■□□□ 1.45
TRAF4-215ENST00000584944 ABCC8Q09428 1581 aa24.12■■□□□ 1.45
TRAF4-215ENST00000584944 DNMBPQ6XZF7 1577 aa24.06■■□□□ 1.44
TRAF4-215ENST00000584944 EIF4G3O43432 1585 aaKnown RBP23.98■■□□□ 1.43
TRAF4-215ENST00000584944 TARBP1Q13395 1621 aaKnown RBP23.95■■□□□ 1.43
TRAF4-215ENST00000584944 RIMBP3CA6NJZ7 1639 aa23.93■■□□□ 1.42
TRAF4-215ENST00000584944 RIMBP3BA6NNM3 1639 aa23.93■■□□□ 1.42
TRAF4-215ENST00000584944 RIMBP3Q9UFD9 1639 aa23.93■■□□□ 1.42
TRAF4-215ENST00000584944 AQRO60306 1485 aaKnown RBP eCLIP23.93■■□□□ 1.422e-10■■■■■ 30.8
TRAF4-215ENST00000584944 POLA1P09884 1462 aaPredicted RBP23.92■■□□□ 1.42
TRAF4-215ENST00000584944 ARHGEF11O15085 1522 aa23.85■■□□□ 1.41
TRAF4-215ENST00000584944 RAD54L2Q9Y4B4 1467 aa23.83■■□□□ 1.41
TRAF4-215ENST00000584944 SOGA1O94964 1423 aa23.82■■□□□ 1.4
TRAF4-215ENST00000584944 CHD1O14646 1710 aa23.81■■□□□ 1.4
TRAF4-215ENST00000584944 TDRD9Q8NDG6 1382 aaKnown RBP23.78■■□□□ 1.4
TRAF4-215ENST00000584944 FGD5Q6ZNL6 1462 aa23.75■■□□□ 1.39
TRAF4-215ENST00000584944 FBLN2P98095 1184 aa23.75■■□□□ 1.39
TRAF4-215ENST00000584944 CUX1P39880 1505 aa23.74■■□□□ 1.39
TRAF4-215ENST00000584944 CYB5RLQ6IPT4 315 aa23.7■■□□□ 1.38
TRAF4-215ENST00000584944 WDR97A6NE52 1622 aa23.7■■□□□ 1.38
TRAF4-215ENST00000584944 WRNQ14191 1432 aaPredicted RBP eCLIP23.68■■□□□ 1.38
TRAF4-215ENST00000584944 SNAPC4Q5SXM2 1469 aa23.66■■□□□ 1.38
TRAF4-215ENST00000584944 ARAP1Q96P48 1450 aa23.62■■□□□ 1.37
TRAF4-215ENST00000584944 GRIN2BQ13224 1484 aa23.61■■□□□ 1.37
TRAF4-215ENST00000584944 MAGI1Q96QZ7 1491 aaPredicted RBP23.61■■□□□ 1.37
TRAF4-215ENST00000584944 CHMP7Q8WUX9 453 aaPredicted RBP23.59■■□□□ 1.37
TRAF4-215ENST00000584944 CLASP1Q7Z460 1538 aa23.55■■□□□ 1.36
TRAF4-215ENST00000584944 SYNJ2O15056 1496 aa23.53■■□□□ 1.36
TRAF4-215ENST00000584944 SYNJ1O43426 1573 aa23.52■■□□□ 1.36
TRAF4-215ENST00000584944 TOP2BQ02880 1626 aa23.52■■□□□ 1.36
TRAF4-215ENST00000584944 GAPVD1Q14C86 1478 aa23.52■■□□□ 1.36
TRAF4-215ENST00000584944 ABCA10Q8WWZ4 1543 aa23.5■■□□□ 1.35
TRAF4-215ENST00000584944 BIVM-ERCC5R4GMW8 1640 aa23.48■■□□□ 1.35
TRAF4-215ENST00000584944 PBRM1Q86U86 1689 aa23.48■■□□□ 1.35
TRAF4-215ENST00000584944 ABCA5Q8WWZ7 1642 aa23.44■■□□□ 1.34
TRAF4-215ENST00000584944 TRHP20396 242 aaPredicted RBP23.42■■□□□ 1.34
TRAF4-215ENST00000584944 GRIN2AQ12879 1464 aa23.3■■□□□ 1.32
TRAF4-215ENST00000584944 ADAMTS12P58397 1594 aa23.26■■□□□ 1.31
TRAF4-215ENST00000584944 NUP160Q12769 1436 aa23.24■■□□□ 1.31
TRAF4-215ENST00000584944 FHAD1B1AJZ9 1412 aa23.22■■□□□ 1.31
TRAF4-215ENST00000584944 CEP170Q5SW79 1584 aa23.22■■□□□ 1.31
TRAF4-215ENST00000584944 KIF27Q86VH2 1401 aa23.2■■□□□ 1.3
TRAF4-215ENST00000584944 CHIC1Q5VXU3 224 aa23.2■■□□□ 1.3
TRAF4-215ENST00000584944 ERCC6L2Q5T890 1561 aa23.19■■□□□ 1.3
TRAF4-215ENST00000584944 ERICH3Q5RHP9 1530 aa23.19■■□□□ 1.3
TRAF4-215ENST00000584944 SHROOM2Q13796 1616 aa23.12■■□□□ 1.29
TRAF4-215ENST00000584944 JPH4Q96JJ6 628 aa23.02■■□□□ 1.28
TRAF4-215ENST00000584944 PRG4Q92954 1404 aaPredicted RBP23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 165.5 ms