RNA–Protein interactions for RNA: ENST00000582252.1

CCDC47-204, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2 BASIC

Gene CCDC47, Length 1,719 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-204ENST00000582252 SYNJ2O15056 1496 aa35.11■■■■□ 3.21
CCDC47-204ENST00000582252 CTTNBP2Q8WZ74 1663 aa35.11■■■■□ 3.21
CCDC47-204ENST00000582252 PPARGC1BQ86YN6 1023 aaKnown RBP35.06■■■■□ 3.2
CCDC47-204ENST00000582252 GRIN2AQ12879 1464 aa35.04■■■■□ 3.2
CCDC47-204ENST00000582252 CHMP7Q8WUX9 453 aaPredicted RBP34.98■■■■□ 3.19
CCDC47-204ENST00000582252 CHD1O14646 1710 aa34.91■■■■□ 3.18
CCDC47-204ENST00000582252 FBLN2P98095 1184 aa34.88■■■■□ 3.17
CCDC47-204ENST00000582252 ARAP1Q96P48 1450 aa34.88■■■■□ 3.17
CCDC47-204ENST00000582252 RANGAP1P46060 587 aaPredicted RBP34.86■■■■□ 3.17
CCDC47-204ENST00000582252 APLP2Q06481 763 aa34.86■■■■□ 3.17
CCDC47-204ENST00000582252 IQGAP2Q13576 1575 aa34.83■■■■□ 3.17
CCDC47-204ENST00000582252 CEP170Q5SW79 1584 aa34.82■■■■□ 3.17
CCDC47-204ENST00000582252 NUP160Q12769 1436 aa34.81■■■■□ 3.16
CCDC47-204ENST00000582252 KIAA0586Q9BVV6 1533 aa34.79■■■■□ 3.16
CCDC47-204ENST00000582252 ZEB1P37275 1124 aaPredicted RBP34.77■■■■□ 3.16
CCDC47-204ENST00000582252 ARHGAP35Q9NRY4 1499 aa34.76■■■■□ 3.16
CCDC47-204ENST00000582252 EFCAB5A4FU69 1503 aa34.74■■■■□ 3.15
CCDC47-204ENST00000582252 TTBK1Q5TCY1 1321 aaPredicted RBP34.71■■■■□ 3.15
CCDC47-204ENST00000582252 SAMD9Q5K651 1589 aa34.66■■■■□ 3.14
CCDC47-204ENST00000582252 UGGT2Q9NYU1 1516 aa34.64■■■■□ 3.14
CCDC47-204ENST00000582252 CLASP1Q7Z460 1538 aa34.49■■■■□ 3.11
CCDC47-204ENST00000582252 FHOD3Q2V2M9 1422 aa34.48■■■■□ 3.11
CCDC47-204ENST00000582252 KIAA0556O60303 1618 aa34.47■■■■□ 3.11
CCDC47-204ENST00000582252 DISP1Q96F81 1524 aa34.45■■■■□ 3.11
CCDC47-204ENST00000582252 JPH4Q96JJ6 628 aa34.45■■■■□ 3.11
CCDC47-204ENST00000582252 SHROOM2Q13796 1616 aa34.45■■■■□ 3.11
CCDC47-204ENST00000582252 P3H3Q8IVL6 736 aa34.44■■■■□ 3.1
CCDC47-204ENST00000582252 MAP3K1Q13233 1512 aa34.44■■■■□ 3.1
CCDC47-204ENST00000582252 CARMIL2Q6F5E8 1435 aa34.4■■■■□ 3.1
CCDC47-204ENST00000582252 FMN1Q68DA7 1419 aa34.38■■■■□ 3.09
CCDC47-204ENST00000582252 TIAM1Q13009 1591 aa34.33■■■■□ 3.09
CCDC47-204ENST00000582252 OSCARQ8IYS5 282 aa34.3■■■■□ 3.08
CCDC47-204ENST00000582252 PRG4Q92954 1404 aaPredicted RBP34.3■■■■□ 3.08
CCDC47-204ENST00000582252 PCF11O94913 1555 aaKnown RBP34.29■■■■□ 3.08
CCDC47-204ENST00000582252 CCER1Q8TC90 406 aaPredicted RBP34.27■■■■□ 3.08
CCDC47-204ENST00000582252 CFAP43Q8NDM7 1665 aa34.26■■■■□ 3.08
CCDC47-204ENST00000582252 KANK4Q5T7N3 995 aaPredicted RBP34.26■■■■□ 3.07
CCDC47-204ENST00000582252 FYCO1Q9BQS8 1478 aa34.25■■■■□ 3.07
CCDC47-204ENST00000582252 CASKIN1Q8WXD9 1431 aa34.23■■■■□ 3.07
CCDC47-204ENST00000582252 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.23■■■■□ 3.07
CCDC47-204ENST00000582252 RRBP1Q9P2E9 1410 aaKnown RBP34.16■■■■□ 3.06
CCDC47-204ENST00000582252 LRRC9Q6ZRR7 1453 aa34.13■■■■□ 3.05
CCDC47-204ENST00000582252 ERCC6L2Q5T890 1561 aa34.12■■■■□ 3.05
CCDC47-204ENST00000582252 HECW1Q76N89 1606 aa34.11■■■■□ 3.05
CCDC47-204ENST00000582252 HNRNPUL2Q1KMD3 747 aaKnown RBP34.1■■■■□ 3.05
CCDC47-204ENST00000582252 RAPGEF6Q8TEU7 1601 aa34.09■■■■□ 3.05
CCDC47-204ENST00000582252 LRRIQ1Q96JM4 1722 aa34.05■■■■□ 3.04
CCDC47-204ENST00000582252 PTPRGP23470 1445 aa34.05■■■■□ 3.04
CCDC47-204ENST00000582252 ATP1B4Q9UN42 357 aaPredicted RBP34.04■■■■□ 3.04
CCDC47-204ENST00000582252 CCNB3Q8WWL7 1395 aa34.01■■■■□ 3.03
CCDC47-204ENST00000582252 ABCA8O94911 1581 aa33.99■■■■□ 3.03
CCDC47-204ENST00000582252 CCDC18Q5T9S5 1454 aa33.99■■■■□ 3.03
CCDC47-204ENST00000582252 PLB1Q6P1J6 1458 aa33.98■■■■□ 3.03
CCDC47-204ENST00000582252 NUP153P49790 1475 aaKnown RBP33.93■■■■□ 3.02
CCDC47-204ENST00000582252 EPRSP07814 1512 aaKnown RBP33.93■■■■□ 3.02
CCDC47-204ENST00000582252 UACAQ9BZF9 1416 aa33.87■■■■□ 3.01
CCDC47-204ENST00000582252 CDK13Q14004 1512 aaKnown RBP33.83■■■■□ 3.01
CCDC47-204ENST00000582252 ABCC2Q92887 1545 aa33.81■■■■□ 3
CCDC47-204ENST00000582252 PHLDB1Q86UU1 1377 aa33.8■■■■□ 3
CCDC47-204ENST00000582252 ARHGEF11O15085 1522 aa33.79■■■■□ 3
CCDC47-204ENST00000582252 MTUS2Q5JR59 1369 aa33.77■■■■□ 3
CCDC47-204ENST00000582252 UHRF1BP1LA0JNW5 1464 aa33.76■■■□□ 2.99
CCDC47-204ENST00000582252 EHBP1L1Q8N3D4 1523 aa33.76■■■□□ 2.99
CCDC47-204ENST00000582252 ARID3CA6NKF2 412 aa33.72■■■□□ 2.99
CCDC47-204ENST00000582252 SUPT6HQ7KZ85 1726 aaKnown RBP33.71■■■□□ 2.99
CCDC47-204ENST00000582252 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.7■■■□□ 2.99
CCDC47-204ENST00000582252 ATP10BO94823 1461 aa33.7■■■□□ 2.98
CCDC47-204ENST00000582252 MAGI3Q5TCQ9 1506 aa33.69■■■□□ 2.98
CCDC47-204ENST00000582252 CDK11AQ9UQ88 783 aaPredicted RBP33.68■■■□□ 2.98
CCDC47-204ENST00000582252 RIMBP3CA6NJZ7 1639 aa33.68■■■□□ 2.98
CCDC47-204ENST00000582252 RIMBP3BA6NNM3 1639 aa33.68■■■□□ 2.98
CCDC47-204ENST00000582252 RIMBP3Q9UFD9 1639 aa33.68■■■□□ 2.98
CCDC47-204ENST00000582252 CLSPNQ9HAW4 1339 aa33.66■■■□□ 2.98
CCDC47-204ENST00000582252 ADCY10Q96PN6 1610 aa33.65■■■□□ 2.98
CCDC47-204ENST00000582252 KDM5BQ9UGL1 1544 aa33.6■■■□□ 2.97
CCDC47-204ENST00000582252 ZCCHC11Q5TAX3 1644 aaKnown RBP33.6■■■□□ 2.97
CCDC47-204ENST00000582252 TROQ12816 1431 aaPredicted RBP33.58■■■□□ 2.97
CCDC47-204ENST00000582252 FGD6Q6ZV73 1430 aa33.58■■■□□ 2.97
CCDC47-204ENST00000582252 NCOA2Q15596 1464 aa33.57■■■□□ 2.97
CCDC47-204ENST00000582252 FAM50AQ14320 339 aaKnown RBP33.57■■■□□ 2.96
CCDC47-204ENST00000582252 ITGAEP38570 1179 aa33.56■■■□□ 2.96
CCDC47-204ENST00000582252 DHX57Q6P158 1386 aaKnown RBP33.54■■■□□ 2.96
CCDC47-204ENST00000582252 PLEKHD1A6NEE1 506 aa33.52■■■□□ 2.96
CCDC47-204ENST00000582252 MYOM3Q5VTT5 1437 aa33.52■■■□□ 2.96
CCDC47-204ENST00000582252 SETD5Q9C0A6 1442 aa33.48■■■□□ 2.95
CCDC47-204ENST00000582252 KIF14Q15058 1648 aa33.46■■■□□ 2.95
CCDC47-204ENST00000582252 RAB3GAP2Q9H2M9 1393 aa33.43■■■□□ 2.94
CCDC47-204ENST00000582252 PTPN23Q9H3S7 1636 aa33.39■■■□□ 2.94
CCDC47-204ENST00000582252 CYB5RLQ6IPT4 315 aa33.37■■■□□ 2.93
CCDC47-204ENST00000582252 NPM1P06748 294 aaKnown RBP eCLIP33.35■■■□□ 2.93
CCDC47-204ENST00000582252 ITSN2Q9NZM3 1697 aa33.34■■■□□ 2.93
CCDC47-204ENST00000582252 TCOF1Q13428 1488 aaKnown RBP33.32■■■□□ 2.92
CCDC47-204ENST00000582252 MIA2Q96PC5 1412 aa33.31■■■□□ 2.92
CCDC47-204ENST00000582252 WDR7Q9Y4E6 1490 aa33.31■■■□□ 2.92
CCDC47-204ENST00000582252 ABCC10Q5T3U5 1492 aa33.3■■■□□ 2.92
CCDC47-204ENST00000582252 CDC42BPAQ5VT25 1732 aa33.27■■■□□ 2.92
CCDC47-204ENST00000582252 ASXL2Q76L83 1435 aa33.25■■■□□ 2.91
CCDC47-204ENST00000582252 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.22■■■□□ 2.912e-9■■■■□ 23.9
CCDC47-204ENST00000582252 GPATCH8Q9UKJ3 1502 aaKnown RBP33.22■■■□□ 2.91
CCDC47-204ENST00000582252 TTC37Q6PGP7 1564 aa33.21■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms