RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 KIF27Q86VH2 1401 aa23.47■■□□□ 1.35
TRAF4-214ENST00000580073 JPH4Q96JJ6 628 aa23.44■■□□□ 1.34
TRAF4-214ENST00000580073 MAPKBP1O60336 1514 aa23.41■■□□□ 1.34
TRAF4-214ENST00000580073 KIAA0586Q9BVV6 1533 aa23.4■■□□□ 1.34
TRAF4-214ENST00000580073 ADCY10Q96PN6 1610 aa23.37■■□□□ 1.33
TRAF4-214ENST00000580073 AEBP2Q6ZN18 517 aaPredicted RBP23.36■■□□□ 1.33
TRAF4-214ENST00000580073 NPM1P06748 294 aaKnown RBP eCLIP23.34■■□□□ 1.33
TRAF4-214ENST00000580073 DIP2BQ9P265 1576 aa23.32■■□□□ 1.32
TRAF4-214ENST00000580073 IGF1RP08069 1367 aa23.32■■□□□ 1.32
TRAF4-214ENST00000580073 ABCC10Q5T3U5 1492 aa23.3■■□□□ 1.32
TRAF4-214ENST00000580073 IQGAP2Q13576 1575 aa23.27■■□□□ 1.32
TRAF4-214ENST00000580073 CARMIL2Q6F5E8 1435 aa23.24■■□□□ 1.31
TRAF4-214ENST00000580073 CARMIL1Q5VZK9 1371 aa23.22■■□□□ 1.31
TRAF4-214ENST00000580073 TSPOAP1O95153 1857 aa23.21■■□□□ 1.31
TRAF4-214ENST00000580073 KDM6BO15054 1643 aa23.19■■□□□ 1.3
TRAF4-214ENST00000580073 FAM69CQ0P6D2 419 aa23.18■■□□□ 1.3
TRAF4-214ENST00000580073 PTPRGP23470 1445 aa23.15■■□□□ 1.3
TRAF4-214ENST00000580073 TNIKQ9UKE5 1360 aa23.14■■□□□ 1.3
TRAF4-214ENST00000580073 ABCC2Q92887 1545 aa23.13■■□□□ 1.29
TRAF4-214ENST00000580073 CTTNBP2Q8WZ74 1663 aa23.13■■□□□ 1.29
TRAF4-214ENST00000580073 RAPGEF2Q9Y4G8 1499 aa23.09■■□□□ 1.29
TRAF4-214ENST00000580073 UHRF1BP1LA0JNW5 1464 aa23.07■■□□□ 1.28
TRAF4-214ENST00000580073 PLB1Q6P1J6 1458 aa23.06■■□□□ 1.28
TRAF4-214ENST00000580073 UGGT2Q9NYU1 1516 aa23.06■■□□□ 1.28
TRAF4-214ENST00000580073 GLI2P10070 1586 aa23.06■■□□□ 1.28
TRAF4-214ENST00000580073 KIAA0556O60303 1618 aa23.05■■□□□ 1.28
TRAF4-214ENST00000580073 DISP1Q96F81 1524 aa23.03■■□□□ 1.28
TRAF4-214ENST00000580073 UACAQ9BZF9 1416 aa23.01■■□□□ 1.27
TRAF4-214ENST00000580073 ZCCHC11Q5TAX3 1644 aaKnown RBP22.99■■□□□ 1.27
TRAF4-214ENST00000580073 PPRC1Q5VV67 1664 aaKnown RBP22.99■■□□□ 1.27
TRAF4-214ENST00000580073 ASXL2Q76L83 1435 aa22.99■■□□□ 1.27
TRAF4-214ENST00000580073 TTBK1Q5TCY1 1321 aaPredicted RBP22.96■■□□□ 1.27
TRAF4-214ENST00000580073 KDM5BQ9UGL1 1544 aa22.95■■□□□ 1.26
TRAF4-214ENST00000580073 MAP3K4Q9Y6R4 1608 aa22.95■■□□□ 1.26
TRAF4-214ENST00000580073 GOLGA3Q08378 1498 aa22.93■■□□□ 1.26
TRAF4-214ENST00000580073 TEX14Q8IWB6 1497 aa22.92■■□□□ 1.26
TRAF4-214ENST00000580073 EPRSP07814 1512 aaKnown RBP22.87■■□□□ 1.25
TRAF4-214ENST00000580073 CFAP43Q8NDM7 1665 aa22.84■■□□□ 1.25
TRAF4-214ENST00000580073 WDR7Q9Y4E6 1490 aa22.82■■□□□ 1.24
TRAF4-214ENST00000580073 ABCA8O94911 1581 aa22.79■■□□□ 1.24
TRAF4-214ENST00000580073 PRXQ9BXM0 1461 aa22.78■■□□□ 1.24
TRAF4-214ENST00000580073 FAM9AQ8IZU1 332 aaPredicted RBP22.73■■□□□ 1.23
TRAF4-214ENST00000580073 MAGI3Q5TCQ9 1506 aa22.68■■□□□ 1.22
TRAF4-214ENST00000580073 ADGRL1O94910 1474 aa22.68■■□□□ 1.22
TRAF4-214ENST00000580073 KDM4FA0A1W2PPD8 638 aa22.68■■□□□ 1.22
TRAF4-214ENST00000580073 SAMD9Q5K651 1589 aa22.65■■□□□ 1.22
TRAF4-214ENST00000580073 CD109Q6YHK3 1445 aa22.63■■□□□ 1.21
TRAF4-214ENST00000580073 COL17A1Q9UMD9 1497 aaPredicted RBP22.61■■□□□ 1.21
TRAF4-214ENST00000580073 RAPGEF6Q8TEU7 1601 aa22.6■■□□□ 1.21
TRAF4-214ENST00000580073 EEA1Q15075 1411 aa22.6■■□□□ 1.21
TRAF4-214ENST00000580073 ABCA9Q8IUA7 1624 aa22.57■■□□□ 1.2
TRAF4-214ENST00000580073 KIF21BO75037 1637 aa22.51■■□□□ 1.19
TRAF4-214ENST00000580073 KCNH8Q96L42 1107 aa22.51■■□□□ 1.19
TRAF4-214ENST00000580073 ARAP3Q8WWN8 1544 aa22.5■■□□□ 1.19
TRAF4-214ENST00000580073 ATP10BO94823 1461 aa22.49■■□□□ 1.19
TRAF4-214ENST00000580073 CSRNP3Q8WYN3 585 aa22.49■■□□□ 1.19
TRAF4-214ENST00000580073 PHLDB1Q86UU1 1377 aa22.49■■□□□ 1.19
TRAF4-214ENST00000580073 EFCAB5A4FU69 1503 aa22.47■■□□□ 1.19
TRAF4-214ENST00000580073 CFAP74Q9C0B2 1584 aa22.45■■□□□ 1.18
TRAF4-214ENST00000580073 HECW2Q9P2P5 1572 aa22.45■■□□□ 1.18
TRAF4-214ENST00000580073 NEO1Q92859 1461 aa22.42■■□□□ 1.18
TRAF4-214ENST00000580073 P3H3Q8IVL6 736 aa22.41■■□□□ 1.18
TRAF4-214ENST00000580073 NUP153P49790 1475 aaKnown RBP22.38■■□□□ 1.17
TRAF4-214ENST00000580073 ARID3CA6NKF2 412 aa22.37■■□□□ 1.17
TRAF4-214ENST00000580073 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.35■■□□□ 1.17
TRAF4-214ENST00000580073 HNRNPUL2Q1KMD3 747 aaKnown RBP22.35■■□□□ 1.17
TRAF4-214ENST00000580073 FHOD3Q2V2M9 1422 aa22.34■■□□□ 1.17
TRAF4-214ENST00000580073 FRMPD1Q5SYB0 1578 aa22.32■■□□□ 1.16
TRAF4-214ENST00000580073 RICTORQ6R327 1708 aa22.31■■□□□ 1.16
TRAF4-214ENST00000580073 ARHGEF40Q8TER5 1519 aa22.31■■□□□ 1.16
TRAF4-214ENST00000580073 ADAMTSL3P82987 1691 aa22.3■■□□□ 1.16
TRAF4-214ENST00000580073 BCORL1Q5H9F3 1711 aa22.29■■□□□ 1.16
TRAF4-214ENST00000580073 HECW1Q76N89 1606 aa22.26■■□□□ 1.15
TRAF4-214ENST00000580073 PLEKHD1A6NEE1 506 aa22.24■■□□□ 1.15
TRAF4-214ENST00000580073 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.24■■□□□ 1.15
TRAF4-214ENST00000580073 TTC37Q6PGP7 1564 aa22.24■■□□□ 1.15
TRAF4-214ENST00000580073 FANCAO15360 1455 aa22.23■■□□□ 1.15
TRAF4-214ENST00000580073 MYO5CQ9NQX4 1742 aa22.23■■□□□ 1.15
TRAF4-214ENST00000580073 DENND4BO75064 1496 aaPredicted RBP22.22■■□□□ 1.15
TRAF4-214ENST00000580073 RANGAP1P46060 587 aaPredicted RBP22.22■■□□□ 1.15
TRAF4-214ENST00000580073 ZMYM4Q5VZL5 1548 aa22.21■■□□□ 1.15
TRAF4-214ENST00000580073 MADDQ8WXG6 1647 aa22.2■■□□□ 1.15
TRAF4-214ENST00000580073 FMN1Q68DA7 1419 aa22.19■■□□□ 1.14
TRAF4-214ENST00000580073 PTPRMP28827 1452 aa22.19■■□□□ 1.14
TRAF4-214ENST00000580073 RAPGEF3O95398 923 aa22.18■■□□□ 1.14
TRAF4-214ENST00000580073 AKNAQ7Z591 1439 aa22.17■■□□□ 1.14
TRAF4-214ENST00000580073 RIMS1Q86UR5 1692 aaKnown RBP22.17■■□□□ 1.14
TRAF4-214ENST00000580073 CDK13Q14004 1512 aaKnown RBP22.16■■□□□ 1.14
TRAF4-214ENST00000580073 ZFYVE16Q7Z3T8 1539 aa22.15■■□□□ 1.14
TRAF4-214ENST00000580073 KIF14Q15058 1648 aa22.14■■□□□ 1.14
TRAF4-214ENST00000580073 POGZQ7Z3K3 1410 aa22.14■■□□□ 1.13
TRAF4-214ENST00000580073 MAGI2Q86UL8 1455 aa22.13■■□□□ 1.13
TRAF4-214ENST00000580073 ARID4BQ4LE39 1312 aaPredicted RBP22.11■■□□□ 1.13
TRAF4-214ENST00000580073 FER1L4A9Z1Z3 1794 aa22.11■■□□□ 1.13
TRAF4-214ENST00000580073 PCF11O94913 1555 aaKnown RBP22.1■■□□□ 1.13
TRAF4-214ENST00000580073 ILDR1Q86SU0 546 aaPredicted RBP22.1■■□□□ 1.13
TRAF4-214ENST00000580073 UBTFP17480 764 aaKnown RBP22.07■■□□□ 1.12
TRAF4-214ENST00000580073 CHIC1Q5VXU3 224 aa22.06■■□□□ 1.12
TRAF4-214ENST00000580073 CDK11AQ9UQ88 783 aaPredicted RBP22.06■■□□□ 1.12
TRAF4-214ENST00000580073 ARHGAP35Q9NRY4 1499 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms