RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 NISCHQ9Y2I1 1504 aa33.59■■■□□ 2.97
TRAF4-214ENST00000580073 CCDC180Q9P1Z9 1646 aa30.42■■■□□ 2.46
TRAF4-214ENST00000580073 ABCC9O60706 1549 aa30.14■■■□□ 2.42
TRAF4-214ENST00000580073 RB1CC1Q8TDY2 1594 aa28.88■■■□□ 2.21
TRAF4-214ENST00000580073 NACADO15069 1562 aa28.66■■■□□ 2.18
TRAF4-214ENST00000580073 UNC13AQ9UPW8 1703 aa28.28■■■□□ 2.12
TRAF4-214ENST00000580073 MYO15BQ96JP2 1530 aa28.26■■■□□ 2.11
TRAF4-214ENST00000580073 DCAF8L2P0C7V8 631 aa28.16■■■□□ 2.1
TRAF4-214ENST00000580073 DNAJC5BQ9UF47 199 aa28.06■■■□□ 2.08
TRAF4-214ENST00000580073 BICRAQ9NZM4 1560 aa27.9■■■□□ 2.06
TRAF4-214ENST00000580073 PABPN1Q86U42 306 aaKnown RBP eCLIP27.89■■■□□ 2.06
TRAF4-214ENST00000580073 ZCCHC6Q5VYS8 1495 aaKnown RBP27.87■■■□□ 2.05
TRAF4-214ENST00000580073 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
TRAF4-214ENST00000580073 SHROOM4Q9ULL8 1493 aa27.75■■■□□ 2.03
TRAF4-214ENST00000580073 SCRIBQ14160 1630 aa27.53■■■□□ 2
TRAF4-214ENST00000580073 CC2D2AQ9P2K1 1620 aa27.35■■□□□ 1.97
TRAF4-214ENST00000580073 EIF4G1Q04637 1599 aaKnown RBP27.28■■□□□ 1.96
TRAF4-214ENST00000580073 CECR2Q9BXF3 1484 aa27.21■■□□□ 1.95
TRAF4-214ENST00000580073 NCAPD3P42695 1498 aa26.32■■□□□ 1.8
TRAF4-214ENST00000580073 SMARCA2P51531 1590 aa26.3■■□□□ 1.8
TRAF4-214ENST00000580073 SMARCA4P51532 1647 aa26.3■■□□□ 1.8
TRAF4-214ENST00000580073 HMGXB3Q12766 1538 aa26.27■■□□□ 1.8
TRAF4-214ENST00000580073 ATAD2BQ9ULI0 1458 aa26.23■■□□□ 1.79
TRAF4-214ENST00000580073 BAZ1AQ9NRL2 1556 aaPredicted RBP26.18■■□□□ 1.78
TRAF4-214ENST00000580073 CUX2O14529 1486 aa26.17■■□□□ 1.78
TRAF4-214ENST00000580073 ERCC6Q03468 1493 aa26.15■■□□□ 1.78
TRAF4-214ENST00000580073 PEG3Q9GZU2 1588 aa26.07■■□□□ 1.76
TRAF4-214ENST00000580073 BAZ1BQ9UIG0 1483 aaKnown RBP26.04■■□□□ 1.76
TRAF4-214ENST00000580073 DNAJC5Q9H3Z4 198 aa25.97■■□□□ 1.75
TRAF4-214ENST00000580073 LAMC3Q9Y6N6 1575 aa25.89■■□□□ 1.73
TRAF4-214ENST00000580073 NESP48681 1621 aa25.85■■□□□ 1.73
TRAF4-214ENST00000580073 MROH2BQ7Z745 1585 aa25.81■■□□□ 1.72
TRAF4-214ENST00000580073 THOC2Q8NI27 1593 aaKnown RBP25.8■■□□□ 1.72
TRAF4-214ENST00000580073 KIF21AQ7Z4S6 1674 aa25.74■■□□□ 1.71
TRAF4-214ENST00000580073 PDS5BQ9NTI5 1447 aa25.65■■□□□ 1.7
TRAF4-214ENST00000580073 WIZO95785 1651 aa25.58■■□□□ 1.69
TRAF4-214ENST00000580073 CADPSQ9ULU8 1353 aa25.49■■□□□ 1.67
TRAF4-214ENST00000580073 MRC2Q9UBG0 1479 aa25.44■■□□□ 1.66
TRAF4-214ENST00000580073 WDR62O43379 1518 aa25.41■■□□□ 1.66
TRAF4-214ENST00000580073 CEP164Q9UPV0 1460 aa25.35■■□□□ 1.65
TRAF4-214ENST00000580073 TOP2AP11388 1531 aaKnown RBP25.32■■□□□ 1.64
TRAF4-214ENST00000580073 PRDM2Q13029 1718 aa25.32■■□□□ 1.64
TRAF4-214ENST00000580073 FANCD2Q9BXW9 1451 aa25.25■■□□□ 1.63
TRAF4-214ENST00000580073 CFTRP13569 1480 aa25.22■■□□□ 1.63
TRAF4-214ENST00000580073 RSF1Q96T23 1441 aaPredicted RBP25.22■■□□□ 1.63
TRAF4-214ENST00000580073 URB2Q14146 1524 aaKnown RBP25.01■■□□□ 1.59
TRAF4-214ENST00000580073 CCDC88BA6NC98 1476 aa24.89■■□□□ 1.57
TRAF4-214ENST00000580073 ABCC8Q09428 1581 aa24.83■■□□□ 1.57
TRAF4-214ENST00000580073 IFT140Q96RY7 1462 aa24.83■■□□□ 1.56
TRAF4-214ENST00000580073 TRIM41Q8WV44 630 aa24.8■■□□□ 1.56
TRAF4-214ENST00000580073 TOPBP1Q92547 1522 aa24.78■■□□□ 1.56
TRAF4-214ENST00000580073 OSCARQ8IYS5 282 aa24.78■■□□□ 1.56
TRAF4-214ENST00000580073 DNMBPQ6XZF7 1577 aa24.76■■□□□ 1.55
TRAF4-214ENST00000580073 EIF4G3O43432 1585 aaKnown RBP24.71■■□□□ 1.55
TRAF4-214ENST00000580073 ZNF608Q9ULD9 1512 aaPredicted RBP24.66■■□□□ 1.54
TRAF4-214ENST00000580073 RIMBP3CA6NJZ7 1639 aa24.62■■□□□ 1.53
TRAF4-214ENST00000580073 RIMBP3BA6NNM3 1639 aa24.62■■□□□ 1.53
TRAF4-214ENST00000580073 RIMBP3Q9UFD9 1639 aa24.62■■□□□ 1.53
TRAF4-214ENST00000580073 TARBP1Q13395 1621 aaKnown RBP24.6■■□□□ 1.53
TRAF4-214ENST00000580073 CHD1O14646 1710 aa24.58■■□□□ 1.53
TRAF4-214ENST00000580073 WDR97A6NE52 1622 aa24.53■■□□□ 1.52
TRAF4-214ENST00000580073 POLA1P09884 1462 aaPredicted RBP24.5■■□□□ 1.51
TRAF4-214ENST00000580073 ARHGEF11O15085 1522 aa24.5■■□□□ 1.51
TRAF4-214ENST00000580073 AQRO60306 1485 aaKnown RBP eCLIP24.4■■□□□ 1.51e-41■■■■■ 103.8
TRAF4-214ENST00000580073 FGD5Q6ZNL6 1462 aa24.35■■□□□ 1.49
TRAF4-214ENST00000580073 SOGA1O94964 1423 aa24.34■■□□□ 1.49
TRAF4-214ENST00000580073 RAD54L2Q9Y4B4 1467 aa24.32■■□□□ 1.48
TRAF4-214ENST00000580073 CUX1P39880 1505 aa24.3■■□□□ 1.48
TRAF4-214ENST00000580073 PBRM1Q86U86 1689 aa24.29■■□□□ 1.48
TRAF4-214ENST00000580073 SYNJ1O43426 1573 aa24.29■■□□□ 1.48
TRAF4-214ENST00000580073 MAGI1Q96QZ7 1491 aaPredicted RBP24.28■■□□□ 1.48
TRAF4-214ENST00000580073 SNAPC4Q5SXM2 1469 aa24.26■■□□□ 1.47
TRAF4-214ENST00000580073 FBLN2P98095 1184 aa24.25■■□□□ 1.47
TRAF4-214ENST00000580073 GRIN2BQ13224 1484 aa24.22■■□□□ 1.47
TRAF4-214ENST00000580073 TDRD9Q8NDG6 1382 aaKnown RBP24.22■■□□□ 1.47
TRAF4-214ENST00000580073 CLASP1Q7Z460 1538 aa24.2■■□□□ 1.47
TRAF4-214ENST00000580073 ARAP1Q96P48 1450 aa24.2■■□□□ 1.47
TRAF4-214ENST00000580073 SYNJ2O15056 1496 aa24.16■■□□□ 1.46
TRAF4-214ENST00000580073 ABCA5Q8WWZ7 1642 aa24.14■■□□□ 1.46
TRAF4-214ENST00000580073 CYB5RLQ6IPT4 315 aa24.14■■□□□ 1.45
TRAF4-214ENST00000580073 GAPVD1Q14C86 1478 aa24.11■■□□□ 1.45
TRAF4-214ENST00000580073 ABCA10Q8WWZ4 1543 aa24.1■■□□□ 1.45
TRAF4-214ENST00000580073 CHMP7Q8WUX9 453 aaPredicted RBP24.1■■□□□ 1.45
TRAF4-214ENST00000580073 BIVM-ERCC5R4GMW8 1640 aa24.06■■□□□ 1.44
TRAF4-214ENST00000580073 TOP2BQ02880 1626 aa23.99■■□□□ 1.43
TRAF4-214ENST00000580073 SUPT5HO00267 1087 aaKnown RBP23.97■■□□□ 1.43
TRAF4-214ENST00000580073 ADAMTS12P58397 1594 aa23.97■■□□□ 1.43
TRAF4-214ENST00000580073 WRNQ14191 1432 aaPredicted RBP eCLIP23.97■■□□□ 1.43
TRAF4-214ENST00000580073 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
TRAF4-214ENST00000580073 GRIN2AQ12879 1464 aa23.91■■□□□ 1.42
TRAF4-214ENST00000580073 ERICH3Q5RHP9 1530 aa23.86■■□□□ 1.41
TRAF4-214ENST00000580073 CEP170Q5SW79 1584 aa23.82■■□□□ 1.4
TRAF4-214ENST00000580073 SHROOM2Q13796 1616 aa23.81■■□□□ 1.4
TRAF4-214ENST00000580073 FHAD1B1AJZ9 1412 aa23.81■■□□□ 1.4
TRAF4-214ENST00000580073 NUP160Q12769 1436 aa23.8■■□□□ 1.4
TRAF4-214ENST00000580073 ERCC6L2Q5T890 1561 aa23.69■■□□□ 1.38
TRAF4-214ENST00000580073 RUSC2Q8N2Y8 1516 aa23.64■■□□□ 1.37
TRAF4-214ENST00000580073 CUL7Q14999 1698 aa23.6■■□□□ 1.37
TRAF4-214ENST00000580073 KIF13AQ9H1H9 1805 aa23.55■■□□□ 1.36
TRAF4-214ENST00000580073 PRG4Q92954 1404 aaPredicted RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 1186.5 ms