RNA–Protein interactions for RNA: ENST00000578789.1

MKS1-207, Transcript of Meckel syndrome, type 1, humanhuman

TSL 4

Gene MKS1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-207ENST00000578789 ERCC6L2Q5T890 1561 aa24.5■■□□□ 1.51
MKS1-207ENST00000578789 KIAA0586Q9BVV6 1533 aa24.49■■□□□ 1.51
MKS1-207ENST00000578789 RAPGEF2Q9Y4G8 1499 aa24.47■■□□□ 1.51
MKS1-207ENST00000578789 CYB5RLQ6IPT4 315 aa24.45■■□□□ 1.5
MKS1-207ENST00000578789 JPH4Q96JJ6 628 aa24.4■■□□□ 1.5
MKS1-207ENST00000578789 PRG4Q92954 1404 aaPredicted RBP24.4■■□□□ 1.5
MKS1-207ENST00000578789 PRXQ9BXM0 1461 aa24.39■■□□□ 1.5
MKS1-207ENST00000578789 EEA1Q15075 1411 aa24.38■■□□□ 1.49
MKS1-207ENST00000578789 IQGAP2Q13576 1575 aa24.37■■□□□ 1.49
MKS1-207ENST00000578789 CTTNBP2Q8WZ74 1663 aa24.31■■□□□ 1.48
MKS1-207ENST00000578789 CSRNP3Q8WYN3 585 aa24.27■■□□□ 1.48
MKS1-207ENST00000578789 UGGT2Q9NYU1 1516 aa24.24■■□□□ 1.47
MKS1-207ENST00000578789 CARMIL2Q6F5E8 1435 aa24.19■■□□□ 1.46
MKS1-207ENST00000578789 DISP1Q96F81 1524 aa24.19■■□□□ 1.46
MKS1-207ENST00000578789 KIF21BO75037 1637 aa24.17■■□□□ 1.46
MKS1-207ENST00000578789 KIAA0556O60303 1618 aa24.15■■□□□ 1.46
MKS1-207ENST00000578789 TNIKQ9UKE5 1360 aa24.13■■□□□ 1.45
MKS1-207ENST00000578789 ADCY10Q96PN6 1610 aa24.1■■□□□ 1.45
MKS1-207ENST00000578789 FAM9AQ8IZU1 332 aaPredicted RBP24.1■■□□□ 1.45
MKS1-207ENST00000578789 PTPRGP23470 1445 aa24.09■■□□□ 1.45
MKS1-207ENST00000578789 GOLGA3Q08378 1498 aa24.07■■□□□ 1.44
MKS1-207ENST00000578789 SAMD9Q5K651 1589 aa23.99■■□□□ 1.43
MKS1-207ENST00000578789 UHRF1BP1LA0JNW5 1464 aa23.99■■□□□ 1.43
MKS1-207ENST00000578789 MAPKBP1O60336 1514 aa23.98■■□□□ 1.43
MKS1-207ENST00000578789 ABCC2Q92887 1545 aa23.96■■□□□ 1.43
MKS1-207ENST00000578789 UACAQ9BZF9 1416 aa23.96■■□□□ 1.43
MKS1-207ENST00000578789 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
MKS1-207ENST00000578789 TTBK1Q5TCY1 1321 aaPredicted RBP23.92■■□□□ 1.42
MKS1-207ENST00000578789 NPM1P06748 294 aaKnown RBP eCLIP23.89■■□□□ 1.41
MKS1-207ENST00000578789 ABCA8O94911 1581 aa23.89■■□□□ 1.41
MKS1-207ENST00000578789 KIF13AQ9H1H9 1805 aa23.88■■□□□ 1.41
MKS1-207ENST00000578789 EFCAB5A4FU69 1503 aa23.87■■□□□ 1.41
MKS1-207ENST00000578789 KDM5BQ9UGL1 1544 aa23.86■■□□□ 1.41
MKS1-207ENST00000578789 PLB1Q6P1J6 1458 aa23.86■■□□□ 1.41
MKS1-207ENST00000578789 DIP2BQ9P265 1576 aa23.83■■□□□ 1.41
MKS1-207ENST00000578789 ABCC10Q5T3U5 1492 aa23.83■■□□□ 1.41
MKS1-207ENST00000578789 ZCCHC11Q5TAX3 1644 aaKnown RBP23.83■■□□□ 1.41
MKS1-207ENST00000578789 UBTFP17480 764 aaKnown RBP23.78■■□□□ 1.4
MKS1-207ENST00000578789 P3H3Q8IVL6 736 aa23.78■■□□□ 1.4
MKS1-207ENST00000578789 FHOD3Q2V2M9 1422 aa23.76■■□□□ 1.39
MKS1-207ENST00000578789 ASXL2Q76L83 1435 aa23.76■■□□□ 1.39
MKS1-207ENST00000578789 RAPGEF6Q8TEU7 1601 aa23.74■■□□□ 1.39
MKS1-207ENST00000578789 EHMT2Q96KQ7 1210 aa23.74■■□□□ 1.39
MKS1-207ENST00000578789 RANGAP1P46060 587 aaPredicted RBP23.72■■□□□ 1.39
MKS1-207ENST00000578789 GLI2P10070 1586 aa23.69■■□□□ 1.38
MKS1-207ENST00000578789 ARHGAP35Q9NRY4 1499 aa23.69■■□□□ 1.38
MKS1-207ENST00000578789 FAM69CQ0P6D2 419 aa23.69■■□□□ 1.38
MKS1-207ENST00000578789 WDR7Q9Y4E6 1490 aa23.66■■□□□ 1.38
MKS1-207ENST00000578789 EPRSP07814 1512 aaKnown RBP23.65■■□□□ 1.38
MKS1-207ENST00000578789 NUP153P49790 1475 aaKnown RBP23.64■■□□□ 1.38
MKS1-207ENST00000578789 ATP10BO94823 1461 aa23.63■■□□□ 1.37
MKS1-207ENST00000578789 MAP3K4Q9Y6R4 1608 aa23.59■■□□□ 1.37
MKS1-207ENST00000578789 FMN1Q68DA7 1419 aa23.59■■□□□ 1.37
MKS1-207ENST00000578789 PPRC1Q5VV67 1664 aaKnown RBP23.57■■□□□ 1.36
MKS1-207ENST00000578789 TSPOAP1O95153 1857 aa23.57■■□□□ 1.36
MKS1-207ENST00000578789 HECW1Q76N89 1606 aa23.53■■□□□ 1.36
MKS1-207ENST00000578789 CFAP43Q8NDM7 1665 aa23.51■■□□□ 1.35
MKS1-207ENST00000578789 ARID3CA6NKF2 412 aa23.51■■□□□ 1.35
MKS1-207ENST00000578789 CLIP1P30622 1438 aa23.5■■□□□ 1.35
MKS1-207ENST00000578789 ABCA9Q8IUA7 1624 aa23.45■■□□□ 1.34
MKS1-207ENST00000578789 CDK13Q14004 1512 aaKnown RBP23.45■■□□□ 1.34
MKS1-207ENST00000578789 PCF11O94913 1555 aaKnown RBP23.44■■□□□ 1.34
MKS1-207ENST00000578789 TEX14Q8IWB6 1497 aa23.44■■□□□ 1.34
MKS1-207ENST00000578789 KDM6BO15054 1643 aa23.43■■□□□ 1.34
MKS1-207ENST00000578789 MAGI3Q5TCQ9 1506 aa23.43■■□□□ 1.34
MKS1-207ENST00000578789 LRRIQ1Q96JM4 1722 aa23.42■■□□□ 1.34
MKS1-207ENST00000578789 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.41■■□□□ 1.34
MKS1-207ENST00000578789 HNRNPUL2Q1KMD3 747 aaKnown RBP23.41■■□□□ 1.34
MKS1-207ENST00000578789 KCNH8Q96L42 1107 aa23.41■■□□□ 1.34
MKS1-207ENST00000578789 CD109Q6YHK3 1445 aa23.41■■□□□ 1.34
MKS1-207ENST00000578789 CASKIN1Q8WXD9 1431 aa23.41■■□□□ 1.34
MKS1-207ENST00000578789 CEP162Q5TB80 1403 aa23.4■■□□□ 1.34
MKS1-207ENST00000578789 FYCO1Q9BQS8 1478 aa23.37■■□□□ 1.33
MKS1-207ENST00000578789 PLEKHD1A6NEE1 506 aa23.35■■□□□ 1.33
MKS1-207ENST00000578789 CCDC18Q5T9S5 1454 aa23.34■■□□□ 1.33
MKS1-207ENST00000578789 LOC105371045A0A1W2PR82 267 aa23.31■■□□□ 1.32
MKS1-207ENST00000578789 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.31■■□□□ 1.32
MKS1-207ENST00000578789 ATP1B4Q9UN42 357 aaPredicted RBP23.3■■□□□ 1.32
MKS1-207ENST00000578789 TTC37Q6PGP7 1564 aa23.29■■□□□ 1.32
MKS1-207ENST00000578789 COL17A1Q9UMD9 1497 aaPredicted RBP23.28■■□□□ 1.32
MKS1-207ENST00000578789 TROQ12816 1431 aaPredicted RBP23.27■■□□□ 1.32
MKS1-207ENST00000578789 CDK11AQ9UQ88 783 aaPredicted RBP23.26■■□□□ 1.31
MKS1-207ENST00000578789 KIF14Q15058 1648 aa23.25■■□□□ 1.31
MKS1-207ENST00000578789 NEO1Q92859 1461 aa23.24■■□□□ 1.31
MKS1-207ENST00000578789 PHLDB1Q86UU1 1377 aa23.22■■□□□ 1.31
MKS1-207ENST00000578789 ARAP3Q8WWN8 1544 aa23.22■■□□□ 1.31
MKS1-207ENST00000578789 CFAP74Q9C0B2 1584 aa23.21■■□□□ 1.31
MKS1-207ENST00000578789 MYO5CQ9NQX4 1742 aa23.19■■□□□ 1.3
MKS1-207ENST00000578789 FANCAO15360 1455 aa23.15■■□□□ 1.3
MKS1-207ENST00000578789 PLCH2O75038 1416 aa23.15■■□□□ 1.3
MKS1-207ENST00000578789 VPS8Q8N3P4 1428 aa23.15■■□□□ 1.3
MKS1-207ENST00000578789 FRMPD1Q5SYB0 1578 aa23.1■■□□□ 1.29
MKS1-207ENST00000578789 AKNAQ7Z591 1439 aa23.09■■□□□ 1.29
MKS1-207ENST00000578789 PREX2Q70Z35 1606 aa23.09■■□□□ 1.29
MKS1-207ENST00000578789 RICTORQ6R327 1708 aa23.07■■□□□ 1.28
MKS1-207ENST00000578789 CDC42BPBQ9Y5S2 1711 aa23.07■■□□□ 1.28
MKS1-207ENST00000578789 EHBP1L1Q8N3D4 1523 aa23.07■■□□□ 1.28
MKS1-207ENST00000578789 CDC42BPAQ5VT25 1732 aa23.05■■□□□ 1.28
MKS1-207ENST00000578789 TIAM1Q13009 1591 aa23.04■■□□□ 1.28
MKS1-207ENST00000578789 DENND4BO75064 1496 aaPredicted RBP23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms