RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 EEA1Q15075 1411 aa21.86■■□□□ 1.09
CLK3-224ENST00000568605 IQGAP2Q13576 1575 aa21.84■■□□□ 1.09
CLK3-224ENST00000568605 KIAA0586Q9BVV6 1533 aa21.84■■□□□ 1.09
CLK3-224ENST00000568605 ERCC6L2Q5T890 1561 aa21.79■■□□□ 1.08
CLK3-224ENST00000568605 PRXQ9BXM0 1461 aa21.76■■□□□ 1.07
CLK3-224ENST00000568605 CHIC1Q5VXU3 224 aa21.75■■□□□ 1.07
CLK3-224ENST00000568605 PRG4Q92954 1404 aaPredicted RBP21.73■■□□□ 1.07
CLK3-224ENST00000568605 KIF21BO75037 1637 aa21.71■■□□□ 1.07
CLK3-224ENST00000568605 CYB5RLQ6IPT4 315 aa21.7■■□□□ 1.06
CLK3-224ENST00000568605 JPH4Q96JJ6 628 aa21.69■■□□□ 1.06
CLK3-224ENST00000568605 CSRNP3Q8WYN3 585 aa21.65■■□□□ 1.06
CLK3-224ENST00000568605 UGGT2Q9NYU1 1516 aa21.65■■□□□ 1.06
CLK3-224ENST00000568605 CARMIL2Q6F5E8 1435 aa21.63■■□□□ 1.05
CLK3-224ENST00000568605 KIAA0556O60303 1618 aa21.62■■□□□ 1.05
CLK3-224ENST00000568605 GOLGA3Q08378 1498 aa21.57■■□□□ 1.04
CLK3-224ENST00000568605 FAM9AQ8IZU1 332 aaPredicted RBP21.55■■□□□ 1.04
CLK3-224ENST00000568605 DISP1Q96F81 1524 aa21.55■■□□□ 1.04
CLK3-224ENST00000568605 ADCY10Q96PN6 1610 aa21.52■■□□□ 1.04
CLK3-224ENST00000568605 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
CLK3-224ENST00000568605 SAMD9Q5K651 1589 aa21.48■■□□□ 1.03
CLK3-224ENST00000568605 PTPRGP23470 1445 aa21.46■■□□□ 1.03
CLK3-224ENST00000568605 EFCAB5A4FU69 1503 aa21.42■■□□□ 1.02
CLK3-224ENST00000568605 ABCC2Q92887 1545 aa21.41■■□□□ 1.02
CLK3-224ENST00000568605 KIF13AQ9H1H9 1805 aa21.4■■□□□ 1.02
CLK3-224ENST00000568605 MAPKBP1O60336 1514 aa21.39■■□□□ 1.02
CLK3-224ENST00000568605 UHRF1BP1LA0JNW5 1464 aa21.38■■□□□ 1.01
CLK3-224ENST00000568605 UACAQ9BZF9 1416 aa21.35■■□□□ 1.01
CLK3-224ENST00000568605 TTBK1Q5TCY1 1321 aaPredicted RBP21.34■■□□□ 1.01
CLK3-224ENST00000568605 ZCCHC11Q5TAX3 1644 aaKnown RBP21.34■■□□□ 1.01
CLK3-224ENST00000568605 NPM1P06748 294 aaKnown RBP eCLIP21.34■■□□□ 1.01
CLK3-224ENST00000568605 ABCA8O94911 1581 aa21.33■■□□□ 1.01
CLK3-224ENST00000568605 RAPGEF6Q8TEU7 1601 aa21.3■■□□□ 1
CLK3-224ENST00000568605 UBTFP17480 764 aaKnown RBP21.3■■□□□ 1
CLK3-224ENST00000568605 TRHP20396 242 aaPredicted RBP21.3■■□□□ 1
CLK3-224ENST00000568605 DIP2BQ9P265 1576 aa21.27■■□□□ 1
CLK3-224ENST00000568605 KDM5BQ9UGL1 1544 aa21.27■■□□□ 1
CLK3-224ENST00000568605 PLB1Q6P1J6 1458 aa21.26■□□□□ 0.99
CLK3-224ENST00000568605 EHMT2Q96KQ7 1210 aa21.23■□□□□ 0.99
CLK3-224ENST00000568605 FHOD3Q2V2M9 1422 aa21.22■□□□□ 0.99
CLK3-224ENST00000568605 ABCC10Q5T3U5 1492 aa21.2■□□□□ 0.98
CLK3-224ENST00000568605 RANGAP1P46060 587 aaPredicted RBP21.2■□□□□ 0.98
CLK3-224ENST00000568605 P3H3Q8IVL6 736 aa21.19■□□□□ 0.98
CLK3-224ENST00000568605 TSPOAP1O95153 1857 aa21.19■□□□□ 0.98
CLK3-224ENST00000568605 ARHGAP35Q9NRY4 1499 aa21.16■□□□□ 0.98
CLK3-224ENST00000568605 ASXL2Q76L83 1435 aa21.16■□□□□ 0.98
CLK3-224ENST00000568605 HECW1Q76N89 1606 aa21.15■□□□□ 0.98
CLK3-224ENST00000568605 GLI2P10070 1586 aa21.14■□□□□ 0.98
CLK3-224ENST00000568605 FMN1Q68DA7 1419 aa21.13■□□□□ 0.97
CLK3-224ENST00000568605 WDR7Q9Y4E6 1490 aa21.12■□□□□ 0.97
CLK3-224ENST00000568605 CFAP43Q8NDM7 1665 aa21.11■□□□□ 0.97
CLK3-224ENST00000568605 MAP3K4Q9Y6R4 1608 aa21.1■□□□□ 0.97
CLK3-224ENST00000568605 NUP153P49790 1475 aaKnown RBP21.09■□□□□ 0.97
CLK3-224ENST00000568605 EPRSP07814 1512 aaKnown RBP21.06■□□□□ 0.96
CLK3-224ENST00000568605 LRRIQ1Q96JM4 1722 aa21.06■□□□□ 0.96
CLK3-224ENST00000568605 FAM69CQ0P6D2 419 aa21.05■□□□□ 0.96
CLK3-224ENST00000568605 ATP10BO94823 1461 aa21.05■□□□□ 0.96
CLK3-224ENST00000568605 PPRC1Q5VV67 1664 aaKnown RBP21.05■□□□□ 0.96
CLK3-224ENST00000568605 CLIP1P30622 1438 aa21.04■□□□□ 0.96
CLK3-224ENST00000568605 PCF11O94913 1555 aaKnown RBP21.04■□□□□ 0.96
CLK3-224ENST00000568605 ABCA9Q8IUA7 1624 aa20.99■□□□□ 0.95
CLK3-224ENST00000568605 KDM6BO15054 1643 aa20.96■□□□□ 0.95
CLK3-224ENST00000568605 CEP162Q5TB80 1403 aa20.96■□□□□ 0.95
CLK3-224ENST00000568605 TEX14Q8IWB6 1497 aa20.96■□□□□ 0.95
CLK3-224ENST00000568605 FYCO1Q9BQS8 1478 aa20.96■□□□□ 0.95
CLK3-224ENST00000568605 CDK13Q14004 1512 aaKnown RBP20.96■□□□□ 0.95
CLK3-224ENST00000568605 ARID3CA6NKF2 412 aa20.96■□□□□ 0.95
CLK3-224ENST00000568605 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.95■□□□□ 0.94
CLK3-224ENST00000568605 HNRNPUL2Q1KMD3 747 aaKnown RBP20.95■□□□□ 0.94
CLK3-224ENST00000568605 CCDC18Q5T9S5 1454 aa20.94■□□□□ 0.94
CLK3-224ENST00000568605 CASKIN1Q8WXD9 1431 aa20.93■□□□□ 0.94
CLK3-224ENST00000568605 MYO5CQ9NQX4 1742 aa20.9■□□□□ 0.94
CLK3-224ENST00000568605 KIF14Q15058 1648 aa20.89■□□□□ 0.94
CLK3-224ENST00000568605 CFAP74Q9C0B2 1584 aa20.89■□□□□ 0.93
CLK3-224ENST00000568605 MAGI3Q5TCQ9 1506 aa20.88■□□□□ 0.93
CLK3-224ENST00000568605 ATP1B4Q9UN42 357 aaPredicted RBP20.87■□□□□ 0.93
CLK3-224ENST00000568605 KCNH8Q96L42 1107 aa20.86■□□□□ 0.93
CLK3-224ENST00000568605 CD109Q6YHK3 1445 aa20.86■□□□□ 0.93
CLK3-224ENST00000568605 TTC37Q6PGP7 1564 aa20.85■□□□□ 0.93
CLK3-224ENST00000568605 PLEKHD1A6NEE1 506 aa20.84■□□□□ 0.93
CLK3-224ENST00000568605 CDK11AQ9UQ88 783 aaPredicted RBP20.82■□□□□ 0.92
CLK3-224ENST00000568605 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.82■□□□□ 0.923e-12■□□□□ 9.1
CLK3-224ENST00000568605 LOC105371045A0A1W2PR82 267 aa20.79■□□□□ 0.92
CLK3-224ENST00000568605 TROQ12816 1431 aaPredicted RBP20.78■□□□□ 0.92
CLK3-224ENST00000568605 NEO1Q92859 1461 aa20.75■□□□□ 0.91
CLK3-224ENST00000568605 PREX2Q70Z35 1606 aa20.74■□□□□ 0.91
CLK3-224ENST00000568605 ARAP3Q8WWN8 1544 aa20.73■□□□□ 0.91
CLK3-224ENST00000568605 CDC42BPAQ5VT25 1732 aa20.73■□□□□ 0.91
CLK3-224ENST00000568605 VPS8Q8N3P4 1428 aa20.73■□□□□ 0.91
CLK3-224ENST00000568605 EHBP1L1Q8N3D4 1523 aa20.72■□□□□ 0.91
CLK3-224ENST00000568605 CDC42BPBQ9Y5S2 1711 aa20.71■□□□□ 0.91
CLK3-224ENST00000568605 PHLDB1Q86UU1 1377 aa20.71■□□□□ 0.91
CLK3-224ENST00000568605 ITSN2Q9NZM3 1697 aa20.7■□□□□ 0.9
CLK3-224ENST00000568605 TIAM1Q13009 1591 aa20.69■□□□□ 0.9
CLK3-224ENST00000568605 FANCAO15360 1455 aa20.69■□□□□ 0.9
CLK3-224ENST00000568605 RICTORQ6R327 1708 aa20.68■□□□□ 0.9
CLK3-224ENST00000568605 SUPT6HQ7KZ85 1726 aaKnown RBP20.67■□□□□ 0.9
CLK3-224ENST00000568605 ARHGAP5Q13017 1502 aa20.64■□□□□ 0.9
CLK3-224ENST00000568605 PLCH2O75038 1416 aa20.63■□□□□ 0.89
CLK3-224ENST00000568605 COL17A1Q9UMD9 1497 aaPredicted RBP20.62■□□□□ 0.89
CLK3-224ENST00000568605 MTUS2Q5JR59 1369 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms