RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 NISCHQ9Y2I1 1504 aa31.59■■■□□ 2.65
CLK3-224ENST00000568605 CCDC180Q9P1Z9 1646 aa28.32■■■□□ 2.12
CLK3-224ENST00000568605 ABCC9O60706 1549 aa27.39■■□□□ 1.98
CLK3-224ENST00000568605 RB1CC1Q8TDY2 1594 aa26.53■■□□□ 1.84
CLK3-224ENST00000568605 NACADO15069 1562 aa26.48■■□□□ 1.83
CLK3-224ENST00000568605 ZCCHC6Q5VYS8 1495 aaKnown RBP26.36■■□□□ 1.81
CLK3-224ENST00000568605 MYO15BQ96JP2 1530 aa26.3■■□□□ 1.8
CLK3-224ENST00000568605 DCAF1Q9Y4B6 1507 aa26.2■■□□□ 1.79
CLK3-224ENST00000568605 DCAF8L2P0C7V8 631 aa26.19■■□□□ 1.78
CLK3-224ENST00000568605 UNC13AQ9UPW8 1703 aa26.07■■□□□ 1.76
CLK3-224ENST00000568605 SCRIBQ14160 1630 aa25.69■■□□□ 1.7
CLK3-224ENST00000568605 BICRAQ9NZM4 1560 aa25.63■■□□□ 1.69
CLK3-224ENST00000568605 SHROOM4Q9ULL8 1493 aa25.48■■□□□ 1.67
CLK3-224ENST00000568605 PABPN1Q86U42 306 aaKnown RBP eCLIP25.44■■□□□ 1.66
CLK3-224ENST00000568605 EIF4G1Q04637 1599 aaKnown RBP24.99■■□□□ 1.59
CLK3-224ENST00000568605 CC2D2AQ9P2K1 1620 aa24.89■■□□□ 1.57
CLK3-224ENST00000568605 DNAJC5BQ9UF47 199 aa24.87■■□□□ 1.57
CLK3-224ENST00000568605 CECR2Q9BXF3 1484 aa24.63■■□□□ 1.53
CLK3-224ENST00000568605 SMARCA4P51532 1647 aa24.61■■□□□ 1.53
CLK3-224ENST00000568605 BAZ1AQ9NRL2 1556 aaPredicted RBP24.56■■□□□ 1.52
CLK3-224ENST00000568605 SMARCA2P51531 1590 aa24.43■■□□□ 1.5
CLK3-224ENST00000568605 PEG3Q9GZU2 1588 aa24.35■■□□□ 1.49
CLK3-224ENST00000568605 HMGXB3Q12766 1538 aa24.33■■□□□ 1.49
CLK3-224ENST00000568605 ATAD2BQ9ULI0 1458 aa24.32■■□□□ 1.48
CLK3-224ENST00000568605 MROH2BQ7Z745 1585 aa24.3■■□□□ 1.48
CLK3-224ENST00000568605 NCAPD3P42695 1498 aa24.3■■□□□ 1.48
CLK3-224ENST00000568605 BAZ1BQ9UIG0 1483 aaKnown RBP24.19■■□□□ 1.46
CLK3-224ENST00000568605 WIZO95785 1651 aa24.15■■□□□ 1.46
CLK3-224ENST00000568605 RSF1Q96T23 1441 aaPredicted RBP23.98■■□□□ 1.43
CLK3-224ENST00000568605 TOP2AP11388 1531 aaKnown RBP23.9■■□□□ 1.42
CLK3-224ENST00000568605 LAMC3Q9Y6N6 1575 aa23.82■■□□□ 1.4
CLK3-224ENST00000568605 PRDM2Q13029 1718 aa23.7■■□□□ 1.38
CLK3-224ENST00000568605 NESP48681 1621 aa23.69■■□□□ 1.38
CLK3-224ENST00000568605 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
CLK3-224ENST00000568605 KIF21AQ7Z4S6 1674 aa23.65■■□□□ 1.38
CLK3-224ENST00000568605 CADPSQ9ULU8 1353 aa23.56■■□□□ 1.36
CLK3-224ENST00000568605 PDS5BQ9NTI5 1447 aa23.53■■□□□ 1.36
CLK3-224ENST00000568605 THOC2Q8NI27 1593 aaKnown RBP23.5■■□□□ 1.35
CLK3-224ENST00000568605 CCDC88BA6NC98 1476 aa23.49■■□□□ 1.35
CLK3-224ENST00000568605 CFTRP13569 1480 aa23.48■■□□□ 1.35
CLK3-224ENST00000568605 CUX2O14529 1486 aa23.43■■□□□ 1.34
CLK3-224ENST00000568605 CEP164Q9UPV0 1460 aa23.39■■□□□ 1.34
CLK3-224ENST00000568605 FANCD2Q9BXW9 1451 aa23.36■■□□□ 1.33
CLK3-224ENST00000568605 MRC2Q9UBG0 1479 aa23.32■■□□□ 1.32
CLK3-224ENST00000568605 SUPT5HO00267 1087 aaKnown RBP23.32■■□□□ 1.32
CLK3-224ENST00000568605 WDR62O43379 1518 aa23.28■■□□□ 1.32
CLK3-224ENST00000568605 URB2Q14146 1524 aaKnown RBP23.1■■□□□ 1.29
CLK3-224ENST00000568605 ABCC8Q09428 1581 aa23.06■■□□□ 1.28
CLK3-224ENST00000568605 DNMBPQ6XZF7 1577 aa23.06■■□□□ 1.28
CLK3-224ENST00000568605 TOPBP1Q92547 1522 aa23.01■■□□□ 1.27
CLK3-224ENST00000568605 IFT140Q96RY7 1462 aa22.85■■□□□ 1.25
CLK3-224ENST00000568605 CUX1P39880 1505 aa22.83■■□□□ 1.25
CLK3-224ENST00000568605 TARBP1Q13395 1621 aaKnown RBP22.81■■□□□ 1.24
CLK3-224ENST00000568605 BIVM-ERCC5R4GMW8 1640 aa22.8■■□□□ 1.24
CLK3-224ENST00000568605 POLA1P09884 1462 aaPredicted RBP22.79■■□□□ 1.24
CLK3-224ENST00000568605 EIF4G3O43432 1585 aaKnown RBP22.78■■□□□ 1.24
CLK3-224ENST00000568605 WDR97A6NE52 1622 aa22.76■■□□□ 1.23
CLK3-224ENST00000568605 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
CLK3-224ENST00000568605 TOP2BQ02880 1626 aa22.73■■□□□ 1.23
CLK3-224ENST00000568605 SYNJ1O43426 1573 aa22.68■■□□□ 1.22
CLK3-224ENST00000568605 WRNQ14191 1432 aaPredicted RBP eCLIP22.68■■□□□ 1.22
CLK3-224ENST00000568605 ZNF608Q9ULD9 1512 aaPredicted RBP22.67■■□□□ 1.22
CLK3-224ENST00000568605 SOGA1O94964 1423 aa22.65■■□□□ 1.22
CLK3-224ENST00000568605 PBRM1Q86U86 1689 aa22.63■■□□□ 1.21
CLK3-224ENST00000568605 RAD54L2Q9Y4B4 1467 aa22.63■■□□□ 1.21
CLK3-224ENST00000568605 CHD1O14646 1710 aa22.56■■□□□ 1.2
CLK3-224ENST00000568605 ABCA5Q8WWZ7 1642 aa22.56■■□□□ 1.2
CLK3-224ENST00000568605 ABCA10Q8WWZ4 1543 aa22.55■■□□□ 1.2
CLK3-224ENST00000568605 AQRO60306 1485 aaKnown RBP eCLIP22.52■■□□□ 1.29e-8■■■■■ 31.4
CLK3-224ENST00000568605 DNAJC5Q9H3Z4 198 aa22.47■■□□□ 1.19
CLK3-224ENST00000568605 TDRD9Q8NDG6 1382 aaKnown RBP22.46■■□□□ 1.19
CLK3-224ENST00000568605 GRIN2BQ13224 1484 aa22.45■■□□□ 1.18
CLK3-224ENST00000568605 GAPVD1Q14C86 1478 aa22.45■■□□□ 1.18
CLK3-224ENST00000568605 MAGI1Q96QZ7 1491 aaPredicted RBP22.43■■□□□ 1.18
CLK3-224ENST00000568605 SNAPC4Q5SXM2 1469 aa22.41■■□□□ 1.18
CLK3-224ENST00000568605 ADAMTS12P58397 1594 aa22.33■■□□□ 1.17
CLK3-224ENST00000568605 ERICH3Q5RHP9 1530 aa22.33■■□□□ 1.17
CLK3-224ENST00000568605 SYNJ2O15056 1496 aa22.31■■□□□ 1.16
CLK3-224ENST00000568605 OSCARQ8IYS5 282 aa22.3■■□□□ 1.16
CLK3-224ENST00000568605 CUL7Q14999 1698 aa22.26■■□□□ 1.15
CLK3-224ENST00000568605 FBLN2P98095 1184 aa22.22■■□□□ 1.15
CLK3-224ENST00000568605 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
CLK3-224ENST00000568605 GRIN2AQ12879 1464 aa22.18■■□□□ 1.14
CLK3-224ENST00000568605 CHMP7Q8WUX9 453 aaPredicted RBP22.18■■□□□ 1.14
CLK3-224ENST00000568605 CLASP1Q7Z460 1538 aa22.17■■□□□ 1.14
CLK3-224ENST00000568605 FHAD1B1AJZ9 1412 aa22.17■■□□□ 1.14
CLK3-224ENST00000568605 RIMBP3CA6NJZ7 1639 aa22.14■■□□□ 1.14
CLK3-224ENST00000568605 RIMBP3BA6NNM3 1639 aa22.14■■□□□ 1.14
CLK3-224ENST00000568605 RIMBP3Q9UFD9 1639 aa22.14■■□□□ 1.14
CLK3-224ENST00000568605 ARHGEF11O15085 1522 aa22.09■■□□□ 1.13
CLK3-224ENST00000568605 CEP170Q5SW79 1584 aa22.08■■□□□ 1.13
CLK3-224ENST00000568605 TRIM41Q8WV44 630 aa22.07■■□□□ 1.12
CLK3-224ENST00000568605 NUP160Q12769 1436 aa22.04■■□□□ 1.12
CLK3-224ENST00000568605 RUSC2Q8N2Y8 1516 aa22.02■■□□□ 1.12
CLK3-224ENST00000568605 SHROOM2Q13796 1616 aa21.99■■□□□ 1.11
CLK3-224ENST00000568605 IGF1RP08069 1367 aa21.99■■□□□ 1.11
CLK3-224ENST00000568605 CTTNBP2Q8WZ74 1663 aa21.93■■□□□ 1.1
CLK3-224ENST00000568605 CARMIL1Q5VZK9 1371 aa21.91■■□□□ 1.1
CLK3-224ENST00000568605 RAPGEF2Q9Y4G8 1499 aa21.87■■□□□ 1.09
CLK3-224ENST00000568605 ARAP1Q96P48 1450 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms