RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	ERICH3	Q5RHP9	1530 aa		29.3	■■■□□ 2.28
CLK3-223	ENST00000568488	TOP2B	Q02880	1626 aa		29.24	■■■□□ 2.27
CLK3-223	ENST00000568488	SUPT5H	O00267	1087 aa	Known RBP	29.24	■■■□□ 2.27
CLK3-223	ENST00000568488	BIVM-ERCC5	R4GMW8	1640 aa		29.22	■■■□□ 2.27
CLK3-223	ENST00000568488	ILDR1	Q86SU0	546 aa	Predicted RBP	29.21	■■■□□ 2.27
CLK3-223	ENST00000568488	DIP2B	Q9P265	1576 aa		29.19	■■■□□ 2.26
CLK3-223	ENST00000568488	MAPKBP1	O60336	1514 aa		29.19	■■■□□ 2.26
CLK3-223	ENST00000568488	KDM6B	O15054	1643 aa		29.17	■■■□□ 2.26
CLK3-223	ENST00000568488	RUSC2	Q8N2Y8	1516 aa		29.11	■■■□□ 2.25
CLK3-223	ENST00000568488	ADCY10	Q96PN6	1610 aa		29.11	■■■□□ 2.25
CLK3-223	ENST00000568488	TSPOAP1	O95153	1857 aa		29.1	■■■□□ 2.25
CLK3-223	ENST00000568488	TTBK1	Q5TCY1	1321 aa	Predicted RBP	29.01	■■■□□ 2.23
CLK3-223	ENST00000568488	KIAA0586	Q9BVV6	1533 aa		28.95	■■■□□ 2.23
CLK3-223	ENST00000568488	PTPRG	P23470	1445 aa		28.9	■■■□□ 2.22
CLK3-223	ENST00000568488	IGF1R	P08069	1367 aa		28.84	■■■□□ 2.21
CLK3-223	ENST00000568488	ADGRL1	O94910	1474 aa		28.83	■■■□□ 2.21
CLK3-223	ENST00000568488	ASXL2	Q76L83	1435 aa		28.78	■■■□□ 2.2
CLK3-223	ENST00000568488	ABCC2	Q92887	1545 aa		28.77	■■■□□ 2.2
CLK3-223	ENST00000568488	TNIK	Q9UKE5	1360 aa		28.75	■■■□□ 2.19
CLK3-223	ENST00000568488	PLB1	Q6P1J6	1458 aa		28.75	■■■□□ 2.19
CLK3-223	ENST00000568488	KIF27	Q86VH2	1401 aa		28.75	■■■□□ 2.19
CLK3-223	ENST00000568488	CARMIL2	Q6F5E8	1435 aa		28.74	■■■□□ 2.19
CLK3-223	ENST00000568488	GLI2	P10070	1586 aa		28.71	■■■□□ 2.19
CLK3-223	ENST00000568488	CUL7	Q14999	1698 aa		28.7	■■■□□ 2.19
CLK3-223	ENST00000568488	PPRC1	Q5VV67	1664 aa	Known RBP	28.7	■■■□□ 2.19
CLK3-223	ENST00000568488	COL17A1	Q9UMD9	1497 aa	Predicted RBP	28.67	■■■□□ 2.18
CLK3-223	ENST00000568488	CARMIL1	Q5VZK9	1371 aa		28.65	■■■□□ 2.18
CLK3-223	ENST00000568488	HECW2	Q9P2P5	1572 aa		28.64	■■■□□ 2.18
CLK3-223	ENST00000568488	UACA	Q9BZF9	1416 aa		28.61	■■■□□ 2.17
CLK3-223	ENST00000568488	UHRF1BP1L	A0JNW5	1464 aa		28.6	■■■□□ 2.17
CLK3-223	ENST00000568488	EPRS	P07814	1512 aa	Known RBP	28.58	■■■□□ 2.17
CLK3-223	ENST00000568488	TEX14	Q8IWB6	1497 aa		28.55	■■■□□ 2.16
CLK3-223	ENST00000568488	IQGAP2	Q13576	1575 aa		28.54	■■■□□ 2.16
CLK3-223	ENST00000568488	MAP3K4	Q9Y6R4	1608 aa		28.52	■■■□□ 2.16
CLK3-223	ENST00000568488	KDM5B	Q9UGL1	1544 aa		28.49	■■■□□ 2.15
CLK3-223	ENST00000568488	DISP1	Q96F81	1524 aa		28.48	■■■□□ 2.15
CLK3-223	ENST00000568488	ZCCHC11	Q5TAX3	1644 aa	Known RBP	28.43	■■■□□ 2.14
CLK3-223	ENST00000568488	KCNH8	Q96L42	1107 aa		28.37	■■■□□ 2.13
CLK3-223	ENST00000568488	WDR7	Q9Y4E6	1490 aa		28.35	■■■□□ 2.13
CLK3-223	ENST00000568488	FBXO41	Q8TF61	875 aa		28.35	■■■□□ 2.13
CLK3-223	ENST00000568488	CD109	Q6YHK3	1445 aa		28.32	■■■□□ 2.12
CLK3-223	ENST00000568488	UGGT2	Q9NYU1	1516 aa		28.32	■■■□□ 2.12
CLK3-223	ENST00000568488	KIAA0556	O60303	1618 aa		28.29	■■■□□ 2.12
CLK3-223	ENST00000568488	RAPGEF2	Q9Y4G8	1499 aa		28.26	■■■□□ 2.11
CLK3-223	ENST00000568488	MAGI3	Q5TCQ9	1506 aa		28.25	■■■□□ 2.11
CLK3-223	ENST00000568488	CFAP43	Q8NDM7	1665 aa		28.19	■■■□□ 2.1
CLK3-223	ENST00000568488	KIF21B	O75037	1637 aa		28.19	■■■□□ 2.1
CLK3-223	ENST00000568488	ARID3C	A6NKF2	412 aa		28.09	■■■□□ 2.09
CLK3-223	ENST00000568488	PTPRM	P28827	1452 aa		28.07	■■■□□ 2.08
CLK3-223	ENST00000568488	GOLGA3	Q08378	1498 aa		28.07	■■■□□ 2.08
CLK3-223	ENST00000568488	ABCA8	O94911	1581 aa		28.07	■■■□□ 2.08
CLK3-223	ENST00000568488	ARAP3	Q8WWN8	1544 aa		28.05	■■■□□ 2.08
CLK3-223	ENST00000568488	ARID4B	Q4LE39	1312 aa	Predicted RBP	28.01	■■■□□ 2.07
CLK3-223	ENST00000568488	FAM9A	Q8IZU1	332 aa	Predicted RBP	28.01	■■■□□ 2.07
CLK3-223	ENST00000568488	RAPGEF3	O95398	923 aa		28	■■■□□ 2.07
CLK3-223	ENST00000568488	CTTNBP2	Q8WZ74	1663 aa		27.98	■■■□□ 2.07
CLK3-223	ENST00000568488	ADAMTSL3	P82987	1691 aa		27.97	■■■□□ 2.07
CLK3-223	ENST00000568488	P3H3	Q8IVL6	736 aa		27.95	■■■□□ 2.06
CLK3-223	ENST00000568488	PHLDB1	Q86UU1	1377 aa		27.94	■■■□□ 2.06
CLK3-223	ENST00000568488	ATP10B	O94823	1461 aa		27.9	■■■□□ 2.06
CLK3-223	ENST00000568488	PCF11	O94913	1555 aa	Known RBP	27.89	■■■□□ 2.05
CLK3-223	ENST00000568488	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	27.87	■■■□□ 2.05
CLK3-223	ENST00000568488	HNRNPUL2	Q1KMD3	747 aa	Known RBP	27.87	■■■□□ 2.05
CLK3-223	ENST00000568488	PLPPR3	Q6T4P5	718 aa		27.87	■■■□□ 2.05
CLK3-223	ENST00000568488	MADD	Q8WXG6	1647 aa		27.85	■■■□□ 2.05
CLK3-223	ENST00000568488	LMTK3	Q96Q04	1460 aa		27.85	■■■□□ 2.05
CLK3-223	ENST00000568488	BCORL1	Q5H9F3	1711 aa		27.85	■■■□□ 2.05
CLK3-223	ENST00000568488	ABCA9	Q8IUA7	1624 aa		27.83	■■■□□ 2.05
CLK3-223	ENST00000568488	HSPA2	P54652	639 aa		27.83	■■■□□ 2.05
CLK3-223	ENST00000568488	NEO1	Q92859	1461 aa		27.82	■■■□□ 2.04
CLK3-223	ENST00000568488	CERK	Q8TCT0	537 aa		27.74	■■■□□ 2.03
CLK3-223	ENST00000568488	PRX	Q9BXM0	1461 aa		27.74	■■■□□ 2.03
CLK3-223	ENST00000568488	RIMS1	Q86UR5	1692 aa	Known RBP	27.74	■■■□□ 2.03
CLK3-223	ENST00000568488	FRMPD1	Q5SYB0	1578 aa		27.73	■■■□□ 2.03
CLK3-223	ENST00000568488	DENND4B	O75064	1496 aa	Predicted RBP	27.67	■■■□□ 2.02
CLK3-223	ENST00000568488	MLEC	Q14165	292 aa		27.65	■■■□□ 2.02
CLK3-223	ENST00000568488	RAPGEF6	Q8TEU7	1601 aa		27.64	■■■□□ 2.02
CLK3-223	ENST00000568488	POGZ	Q7Z3K3	1410 aa		27.64	■■■□□ 2.02
CLK3-223	ENST00000568488	ARHGEF40	Q8TER5	1519 aa		27.63	■■■□□ 2.01
CLK3-223	ENST00000568488	PLEKHD1	A6NEE1	506 aa		27.62	■■■□□ 2.01
CLK3-223	ENST00000568488	RANGAP1	P46060	587 aa	Predicted RBP	27.62	■■■□□ 2.01
CLK3-223	ENST00000568488	AKNA	Q7Z591	1439 aa		27.61	■■■□□ 2.01
CLK3-223	ENST00000568488	FANCA	O15360	1455 aa		27.58	■■■□□ 2.01
CLK3-223	ENST00000568488	DISP3	Q9P2K9	1392 aa		27.58	■■■□□ 2.01
CLK3-223	ENST00000568488	FHOD3	Q2V2M9	1422 aa		27.57	■■■□□ 2
CLK3-223	ENST00000568488	NUP153	P49790	1475 aa	Known RBP	27.56	■■■□□ 2
CLK3-223	ENST00000568488	RICTOR	Q6R327	1708 aa		27.55	■■■□□ 2
CLK3-223	ENST00000568488	ILDR2	Q71H61	639 aa		27.55	■■■□□ 2
CLK3-223	ENST00000568488	SAMD9	Q5K651	1589 aa		27.55	■■■□□ 2
CLK3-223	ENST00000568488	YEATS2	Q9ULM3	1422 aa		27.53	■■■□□ 2
CLK3-223	ENST00000568488	ZFYVE16	Q7Z3T8	1539 aa		27.5	■■□□□ 1.99
CLK3-223	ENST00000568488	SOCS7	O14512	581 aa		27.49	■■□□□ 1.99
CLK3-223	ENST00000568488	EFCAB5	A4FU69	1503 aa		27.47	■■□□□ 1.99
CLK3-223	ENST00000568488	CSRNP3	Q8WYN3	585 aa		27.47	■■□□□ 1.99
CLK3-223	ENST00000568488	CFAP74	Q9C0B2	1584 aa		27.47	■■□□□ 1.99
CLK3-223	ENST00000568488	SIGLEC1	Q9BZZ2	1709 aa		27.47	■■□□□ 1.99
CLK3-223	ENST00000568488	ZMYM4	Q5VZL5	1548 aa		27.45	■■□□□ 1.98
CLK3-223	ENST00000568488	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	27.45	■■□□□ 1.98	3e-12	■□□□□ 9.1
CLK3-223	ENST00000568488	FER1L4	A9Z1Z3	1794 aa		27.43	■■□□□ 1.98
CLK3-223	ENST00000568488	CEBPA	P49715	358 aa	Predicted RBP	27.43	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 13 ms