RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	NISCH	Q9Y2I1	1504 aa		41.31	■■■■■ 4.2
CLK3-223	ENST00000568488	ABCC9	O60706	1549 aa		38.18	■■■■□ 3.7
CLK3-223	ENST00000568488	CCDC180	Q9P1Z9	1646 aa		37.28	■■■■□ 3.56
CLK3-223	ENST00000568488	DNAJC5B	Q9UF47	199 aa		36.49	■■■■□ 3.43
CLK3-223	ENST00000568488	RB1CC1	Q8TDY2	1594 aa		35.93	■■■■□ 3.34
CLK3-223	ENST00000568488	PABPN1	Q86U42	306 aa	Known RBP eCLIP	35.53	■■■■□ 3.28
CLK3-223	ENST00000568488	NACAD	O15069	1562 aa		35.48	■■■■□ 3.27
CLK3-223	ENST00000568488	DCAF8L2	P0C7V8	631 aa		35.48	■■■■□ 3.27
CLK3-223	ENST00000568488	UNC13A	Q9UPW8	1703 aa		35.04	■■■■□ 3.2
CLK3-223	ENST00000568488	BICRA	Q9NZM4	1560 aa		34.88	■■■■□ 3.17
CLK3-223	ENST00000568488	MYO15B	Q96JP2	1530 aa		34.68	■■■■□ 3.14
CLK3-223	ENST00000568488	CECR2	Q9BXF3	1484 aa		34.44	■■■■□ 3.1
CLK3-223	ENST00000568488	CC2D2A	Q9P2K1	1620 aa		34.37	■■■■□ 3.09
CLK3-223	ENST00000568488	SHROOM4	Q9ULL8	1493 aa		34.26	■■■■□ 3.07
CLK3-223	ENST00000568488	EIF4G1	Q04637	1599 aa	Known RBP	34.11	■■■■□ 3.05
CLK3-223	ENST00000568488	SCRIB	Q14160	1630 aa		34.06	■■■■□ 3.04
CLK3-223	ENST00000568488	ZCCHC6	Q5VYS8	1495 aa	Known RBP	34.04	■■■■□ 3.04
CLK3-223	ENST00000568488	DNAJC5	Q9H3Z4	198 aa		34.02	■■■■□ 3.04
CLK3-223	ENST00000568488	DCAF1	Q9Y4B6	1507 aa		33.99	■■■■□ 3.03
CLK3-223	ENST00000568488	CUX2	O14529	1486 aa		33.11	■■■□□ 2.89
CLK3-223	ENST00000568488	ERCC6	Q03468	1493 aa		33.03	■■■□□ 2.88
CLK3-223	ENST00000568488	NCAPD3	P42695	1498 aa		32.8	■■■□□ 2.84
CLK3-223	ENST00000568488	ATAD2B	Q9ULI0	1458 aa		32.61	■■■□□ 2.81
CLK3-223	ENST00000568488	NES	P48681	1621 aa		32.57	■■■□□ 2.8
CLK3-223	ENST00000568488	SMARCA2	P51531	1590 aa		32.45	■■■□□ 2.78
CLK3-223	ENST00000568488	HMGXB3	Q12766	1538 aa		32.42	■■■□□ 2.78
CLK3-223	ENST00000568488	TRIM41	Q8WV44	630 aa		32.36	■■■□□ 2.77
CLK3-223	ENST00000568488	SMARCA4	P51532	1647 aa		32.36	■■■□□ 2.77
CLK3-223	ENST00000568488	BAZ1B	Q9UIG0	1483 aa	Known RBP	32.28	■■■□□ 2.76
CLK3-223	ENST00000568488	THOC2	Q8NI27	1593 aa	Known RBP	32.27	■■■□□ 2.76
CLK3-223	ENST00000568488	LAMC3	Q9Y6N6	1575 aa		32.15	■■■□□ 2.74
CLK3-223	ENST00000568488	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	32.1	■■■□□ 2.73
CLK3-223	ENST00000568488	PDS5B	Q9NTI5	1447 aa		32.07	■■■□□ 2.72
CLK3-223	ENST00000568488	KIF21A	Q7Z4S6	1674 aa		32.05	■■■□□ 2.72
CLK3-223	ENST00000568488	PEG3	Q9GZU2	1588 aa		31.98	■■■□□ 2.71
CLK3-223	ENST00000568488	MROH2B	Q7Z745	1585 aa		31.85	■■■□□ 2.69
CLK3-223	ENST00000568488	CADPS	Q9ULU8	1353 aa		31.81	■■■□□ 2.68
CLK3-223	ENST00000568488	MRC2	Q9UBG0	1479 aa		31.79	■■■□□ 2.68
CLK3-223	ENST00000568488	WDR62	O43379	1518 aa		31.69	■■■□□ 2.66
CLK3-223	ENST00000568488	OSCAR	Q8IYS5	282 aa		31.62	■■■□□ 2.65
CLK3-223	ENST00000568488	CEP164	Q9UPV0	1460 aa		31.53	■■■□□ 2.64
CLK3-223	ENST00000568488	FANCD2	Q9BXW9	1451 aa		31.45	■■■□□ 2.62
CLK3-223	ENST00000568488	WIZ	O95785	1651 aa		31.43	■■■□□ 2.62
CLK3-223	ENST00000568488	CFTR	P13569	1480 aa		31.26	■■■□□ 2.59
CLK3-223	ENST00000568488	URB2	Q14146	1524 aa	Known RBP	31.21	■■■□□ 2.59
CLK3-223	ENST00000568488	RIMBP3C	A6NJZ7	1639 aa		31.16	■■■□□ 2.58
CLK3-223	ENST00000568488	RIMBP3B	A6NNM3	1639 aa		31.16	■■■□□ 2.58
CLK3-223	ENST00000568488	RIMBP3	Q9UFD9	1639 aa		31.16	■■■□□ 2.58
CLK3-223	ENST00000568488	ARHGEF11	O15085	1522 aa		31	■■■□□ 2.55
CLK3-223	ENST00000568488	CYB5RL	Q6IPT4	315 aa		30.98	■■■□□ 2.55
CLK3-223	ENST00000568488	ZNF608	Q9ULD9	1512 aa	Predicted RBP	30.98	■■■□□ 2.55
CLK3-223	ENST00000568488	RSF1	Q96T23	1441 aa	Predicted RBP	30.95	■■■□□ 2.54
CLK3-223	ENST00000568488	TOP2A	P11388	1531 aa	Known RBP	30.94	■■■□□ 2.54
CLK3-223	ENST00000568488	IFT140	Q96RY7	1462 aa		30.93	■■■□□ 2.54
CLK3-223	ENST00000568488	TRH	P20396	242 aa	Predicted RBP	30.92	■■■□□ 2.54
CLK3-223	ENST00000568488	PRDM2	Q13029	1718 aa		30.76	■■■□□ 2.52
CLK3-223	ENST00000568488	TOPBP1	Q92547	1522 aa		30.75	■■■□□ 2.51
CLK3-223	ENST00000568488	FBLN2	P98095	1184 aa		30.72	■■■□□ 2.51
CLK3-223	ENST00000568488	EIF4G3	O43432	1585 aa	Known RBP	30.7	■■■□□ 2.5
CLK3-223	ENST00000568488	CCDC88B	A6NC98	1476 aa		30.67	■■■□□ 2.5
CLK3-223	ENST00000568488	AQR	O60306	1485 aa	Known RBP eCLIP	30.65	■■■□□ 2.5	9e-8	■■■■■ 31.4
CLK3-223	ENST00000568488	ARAP1	Q96P48	1450 aa		30.65	■■■□□ 2.5
CLK3-223	ENST00000568488	ABCC8	Q09428	1581 aa		30.63	■■■□□ 2.49
CLK3-223	ENST00000568488	CHD1	O14646	1710 aa		30.61	■■■□□ 2.49
CLK3-223	ENST00000568488	AEBP2	Q6ZN18	517 aa	Predicted RBP	30.55	■■■□□ 2.48
CLK3-223	ENST00000568488	DNMBP	Q6XZF7	1577 aa		30.54	■■■□□ 2.48
CLK3-223	ENST00000568488	TARBP1	Q13395	1621 aa	Known RBP	30.48	■■■□□ 2.47
CLK3-223	ENST00000568488	POLA1	P09884	1462 aa	Predicted RBP	30.39	■■■□□ 2.46
CLK3-223	ENST00000568488	TDRD9	Q8NDG6	1382 aa	Known RBP	30.37	■■■□□ 2.45
CLK3-223	ENST00000568488	RAD54L2	Q9Y4B4	1467 aa		30.36	■■■□□ 2.45
CLK3-223	ENST00000568488	CHMP7	Q8WUX9	453 aa	Predicted RBP	30.32	■■■□□ 2.44
CLK3-223	ENST00000568488	SOGA1	O94964	1423 aa		30.3	■■■□□ 2.44
CLK3-223	ENST00000568488	SNAPC4	Q5SXM2	1469 aa		30.27	■■■□□ 2.44
CLK3-223	ENST00000568488	CLASP1	Q7Z460	1538 aa		30.22	■■■□□ 2.43
CLK3-223	ENST00000568488	SYNJ1	O43426	1573 aa		30.19	■■■□□ 2.42
CLK3-223	ENST00000568488	FGD5	Q6ZNL6	1462 aa		30.12	■■■□□ 2.41
CLK3-223	ENST00000568488	MAGI1	Q96QZ7	1491 aa	Predicted RBP	30.12	■■■□□ 2.41
CLK3-223	ENST00000568488	GRIN2B	Q13224	1484 aa		30.07	■■■□□ 2.4
CLK3-223	ENST00000568488	WDR97	A6NE52	1622 aa		30.07	■■■□□ 2.4
CLK3-223	ENST00000568488	SYNJ2	O15056	1496 aa		30.05	■■■□□ 2.4
CLK3-223	ENST00000568488	GAPVD1	Q14C86	1478 aa		30.05	■■■□□ 2.4
CLK3-223	ENST00000568488	CUX1	P39880	1505 aa		29.96	■■■□□ 2.39
CLK3-223	ENST00000568488	PBRM1	Q86U86	1689 aa		29.84	■■■□□ 2.37
CLK3-223	ENST00000568488	ERCC6L2	Q5T890	1561 aa		29.77	■■■□□ 2.36
CLK3-223	ENST00000568488	ABCA10	Q8WWZ4	1543 aa		29.69	■■■□□ 2.34
CLK3-223	ENST00000568488	GRIN2A	Q12879	1464 aa		29.68	■■■□□ 2.34
CLK3-223	ENST00000568488	ABCA5	Q8WWZ7	1642 aa		29.67	■■■□□ 2.34
CLK3-223	ENST00000568488	CEP170	Q5SW79	1584 aa		29.64	■■■□□ 2.34
CLK3-223	ENST00000568488	NUP160	Q12769	1436 aa		29.58	■■■□□ 2.33
CLK3-223	ENST00000568488	ADAMTS12	P58397	1594 aa		29.52	■■■□□ 2.32
CLK3-223	ENST00000568488	KIF13A	Q9H1H9	1805 aa		29.5	■■■□□ 2.31
CLK3-223	ENST00000568488	WRN	Q14191	1432 aa	Predicted RBP eCLIP	29.5	■■■□□ 2.31
CLK3-223	ENST00000568488	FHAD1	B1AJZ9	1412 aa		29.47	■■■□□ 2.31
CLK3-223	ENST00000568488	SHROOM2	Q13796	1616 aa		29.47	■■■□□ 2.31
CLK3-223	ENST00000568488	FAM69C	Q0P6D2	419 aa		29.47	■■■□□ 2.31
CLK3-223	ENST00000568488	PRG4	Q92954	1404 aa	Predicted RBP	29.45	■■■□□ 2.3
CLK3-223	ENST00000568488	NPM1	P06748	294 aa	Known RBP eCLIP	29.42	■■■□□ 2.3
CLK3-223	ENST00000568488	JPH4	Q96JJ6	628 aa		29.41	■■■□□ 2.3
CLK3-223	ENST00000568488	ABCC10	Q5T3U5	1492 aa		29.32	■■■□□ 2.28
CLK3-223	ENST00000568488	KDM4F	A0A1W2PPD8	638 aa		29.31	■■■□□ 2.28

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms