RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 WDR62O43379 1518 aa27.52■■■□□ 2
SMPD3-211ENST00000568373 THOC2Q8NI27 1593 aaKnown RBP27.52■■■□□ 2
SMPD3-211ENST00000568373 FHAD1B1AJZ9 1412 aa27.51■■□□□ 1.99
SMPD3-211ENST00000568373 MAP3K1Q13233 1512 aa27.49■■□□□ 1.99
SMPD3-211ENST00000568373 PBRM1Q86U86 1689 aa27.48■■□□□ 1.99
SMPD3-211ENST00000568373 TIAM1Q13009 1591 aa27.45■■□□□ 1.98
SMPD3-211ENST00000568373 HNRNPUL2Q1KMD3 747 aaKnown RBP27.44■■□□□ 1.98
SMPD3-211ENST00000568373 IFT140Q96RY7 1462 aa27.43■■□□□ 1.98
SMPD3-211ENST00000568373 FHOD3Q2V2M9 1422 aa27.42■■□□□ 1.98
SMPD3-211ENST00000568373 AQRO60306 1485 aaKnown RBP eCLIP27.42■■□□□ 1.98
SMPD3-211ENST00000568373 PCF11O94913 1555 aaKnown RBP27.41■■□□□ 1.98
SMPD3-211ENST00000568373 P3H3Q8IVL6 736 aa27.4■■□□□ 1.98
SMPD3-211ENST00000568373 RRBP1Q9P2E9 1410 aaKnown RBP27.38■■□□□ 1.97
SMPD3-211ENST00000568373 GRIN2BQ13224 1484 aa27.37■■□□□ 1.97
SMPD3-211ENST00000568373 ADAMTS12P58397 1594 aa27.37■■□□□ 1.97
SMPD3-211ENST00000568373 SAMD9Q5K651 1589 aa27.35■■□□□ 1.97
SMPD3-211ENST00000568373 FYCO1Q9BQS8 1478 aa27.35■■□□□ 1.97
SMPD3-211ENST00000568373 CFAP43Q8NDM7 1665 aa27.35■■□□□ 1.97
SMPD3-211ENST00000568373 LRRC9Q6ZRR7 1453 aa27.32■■□□□ 1.96
SMPD3-211ENST00000568373 ZNF608Q9ULD9 1512 aaPredicted RBP27.32■■□□□ 1.96
SMPD3-211ENST00000568373 CASKIN1Q8WXD9 1431 aa27.32■■□□□ 1.96
SMPD3-211ENST00000568373 FMN1Q68DA7 1419 aa27.31■■□□□ 1.96
SMPD3-211ENST00000568373 CCNB3Q8WWL7 1395 aa27.26■■□□□ 1.95
SMPD3-211ENST00000568373 SNAPC4Q5SXM2 1469 aa27.23■■□□□ 1.95
SMPD3-211ENST00000568373 EIF4G3O43432 1585 aaKnown RBP27.21■■□□□ 1.95
SMPD3-211ENST00000568373 ATP1B4Q9UN42 357 aaPredicted RBP27.2■■□□□ 1.95
SMPD3-211ENST00000568373 IQGAP2Q13576 1575 aa27.2■■□□□ 1.94
SMPD3-211ENST00000568373 PHLDB1Q86UU1 1377 aa27.13■■□□□ 1.93
SMPD3-211ENST00000568373 LRRIQ1Q96JM4 1722 aa27.07■■□□□ 1.92
SMPD3-211ENST00000568373 UGGT2Q9NYU1 1516 aa27.06■■□□□ 1.92
SMPD3-211ENST00000568373 GRIN2AQ12879 1464 aa27.06■■□□□ 1.92
SMPD3-211ENST00000568373 MAGI1Q96QZ7 1491 aaPredicted RBP27.06■■□□□ 1.92
SMPD3-211ENST00000568373 KIAA0586Q9BVV6 1533 aa27.04■■□□□ 1.92
SMPD3-211ENST00000568373 MTUS2Q5JR59 1369 aa26.98■■□□□ 1.91
SMPD3-211ENST00000568373 SYNJ2O15056 1496 aa26.97■■□□□ 1.91
SMPD3-211ENST00000568373 ITGAEP38570 1179 aa26.97■■□□□ 1.91
SMPD3-211ENST00000568373 DHX57Q6P158 1386 aaKnown RBP26.97■■□□□ 1.91
SMPD3-211ENST00000568373 CLSPNQ9HAW4 1339 aa26.96■■□□□ 1.91
SMPD3-211ENST00000568373 CCDC18Q5T9S5 1454 aa26.96■■□□□ 1.91
SMPD3-211ENST00000568373 HECW1Q76N89 1606 aa26.95■■□□□ 1.9
SMPD3-211ENST00000568373 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.93■■□□□ 1.9
SMPD3-211ENST00000568373 EHBP1L1Q8N3D4 1523 aa26.92■■□□□ 1.9
SMPD3-211ENST00000568373 KIAA0556O60303 1618 aa26.92■■□□□ 1.9
SMPD3-211ENST00000568373 FAM50AQ14320 339 aaKnown RBP26.91■■□□□ 1.9
SMPD3-211ENST00000568373 DISP1Q96F81 1524 aa26.91■■□□□ 1.9
SMPD3-211ENST00000568373 CHMP7Q8WUX9 453 aaPredicted RBP26.9■■□□□ 1.9
SMPD3-211ENST00000568373 CEP170Q5SW79 1584 aa26.88■■□□□ 1.89
SMPD3-211ENST00000568373 FGD6Q6ZV73 1430 aa26.88■■□□□ 1.89
SMPD3-211ENST00000568373 SUPT6HQ7KZ85 1726 aaKnown RBP26.88■■□□□ 1.89
SMPD3-211ENST00000568373 NCOA2Q15596 1464 aa26.87■■□□□ 1.89
SMPD3-211ENST00000568373 EPRSP07814 1512 aaKnown RBP26.85■■□□□ 1.89
SMPD3-211ENST00000568373 RAB3GAP2Q9H2M9 1393 aa26.84■■□□□ 1.89
SMPD3-211ENST00000568373 MAGI3Q5TCQ9 1506 aa26.84■■□□□ 1.89
SMPD3-211ENST00000568373 SETD5Q9C0A6 1442 aa26.82■■□□□ 1.88
SMPD3-211ENST00000568373 NUP160Q12769 1436 aa26.82■■□□□ 1.88
SMPD3-211ENST00000568373 ARHGEF11O15085 1522 aa26.81■■□□□ 1.88
SMPD3-211ENST00000568373 MYOM3Q5VTT5 1437 aa26.8■■□□□ 1.88
SMPD3-211ENST00000568373 FBLN2P98095 1184 aa26.79■■□□□ 1.88
SMPD3-211ENST00000568373 CDK13Q14004 1512 aaKnown RBP26.77■■□□□ 1.88
SMPD3-211ENST00000568373 RAPGEF6Q8TEU7 1601 aa26.72■■□□□ 1.87
SMPD3-211ENST00000568373 NUP153P49790 1475 aaKnown RBP26.7■■□□□ 1.86
SMPD3-211ENST00000568373 ZNF316A6NFI3 1004 aaPredicted RBP26.69■■□□□ 1.86
SMPD3-211ENST00000568373 PTPN23Q9H3S7 1636 aa26.68■■□□□ 1.86
SMPD3-211ENST00000568373 CARMIL2Q6F5E8 1435 aa26.67■■□□□ 1.86
SMPD3-211ENST00000568373 JPH4Q96JJ6 628 aa26.67■■□□□ 1.86
SMPD3-211ENST00000568373 MAPKBP1O60336 1514 aa26.64■■□□□ 1.86
SMPD3-211ENST00000568373 ARID3CA6NKF2 412 aa26.64■■□□□ 1.85
SMPD3-211ENST00000568373 TCOF1Q13428 1488 aaKnown RBP26.63■■□□□ 1.85
SMPD3-211ENST00000568373 PTPRKQ15262 1439 aa26.62■■□□□ 1.85
SMPD3-211ENST00000568373 DIEXFQ68CQ4 756 aaKnown RBP26.62■■□□□ 1.85
SMPD3-211ENST00000568373 MIA2Q96PC5 1412 aa26.59■■□□□ 1.85
SMPD3-211ENST00000568373 HFM1A2PYH4 1435 aa26.58■■□□□ 1.85
SMPD3-211ENST00000568373 PLB1Q6P1J6 1458 aa26.58■■□□□ 1.85
SMPD3-211ENST00000568373 CDK11AQ9UQ88 783 aaPredicted RBP26.55■■□□□ 1.84
SMPD3-211ENST00000568373 CHD1O14646 1710 aa26.51■■□□□ 1.84
SMPD3-211ENST00000568373 NAIPQ13075 1403 aa26.5■■□□□ 1.83
SMPD3-211ENST00000568373 TROQ12816 1431 aaPredicted RBP26.48■■□□□ 1.83
SMPD3-211ENST00000568373 ABCA8O94911 1581 aa26.47■■□□□ 1.83
SMPD3-211ENST00000568373 PRG4Q92954 1404 aaPredicted RBP26.44■■□□□ 1.82
SMPD3-211ENST00000568373 AKNAQ7Z591 1439 aa26.42■■□□□ 1.82
SMPD3-211ENST00000568373 UACAQ9BZF9 1416 aa26.42■■□□□ 1.82
SMPD3-211ENST00000568373 ADCY10Q96PN6 1610 aa26.42■■□□□ 1.82
SMPD3-211ENST00000568373 GCC2Q8IWJ2 1684 aa26.41■■□□□ 1.82
SMPD3-211ENST00000568373 SHROOM2Q13796 1616 aa26.37■■□□□ 1.81
SMPD3-211ENST00000568373 ITSN2Q9NZM3 1697 aa26.36■■□□□ 1.81
SMPD3-211ENST00000568373 KIF14Q15058 1648 aa26.35■■□□□ 1.81
SMPD3-211ENST00000568373 PTPRGP23470 1445 aa26.35■■□□□ 1.81
SMPD3-211ENST00000568373 DNMT1P26358 1616 aaKnown RBP26.34■■□□□ 1.81
SMPD3-211ENST00000568373 CHIC2Q9UKJ5 165 aa26.34■■□□□ 1.81
SMPD3-211ENST00000568373 ATP10BO94823 1461 aa26.34■■□□□ 1.81
SMPD3-211ENST00000568373 SIN3AQ96ST3 1273 aa26.34■■□□□ 1.81
SMPD3-211ENST00000568373 RRP7BPQ9NSQ0 103 aa26.34■■□□□ 1.81
SMPD3-211ENST00000568373 DAPK1P53355 1430 aa26.33■■□□□ 1.81
SMPD3-211ENST00000568373 TIMELESSQ9UNS1 1208 aa26.32■■□□□ 1.8
SMPD3-211ENST00000568373 GPATCH8Q9UKJ3 1502 aaKnown RBP26.31■■□□□ 1.8
SMPD3-211ENST00000568373 NEUROD1Q13562 356 aa26.29■■□□□ 1.8
SMPD3-211ENST00000568373 ABCC5O15440 1437 aa26.29■■□□□ 1.8
SMPD3-211ENST00000568373 ZNF644Q9H582 1327 aaPredicted RBP26.29■■□□□ 1.8
SMPD3-211ENST00000568373 ROCK1Q13464 1354 aa26.28■■□□□ 1.8
SMPD3-211ENST00000568373 PLEKHD1A6NEE1 506 aa26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms