RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RRBP1Q9P2E9 1410 aaKnown RBP30.56■■■□□ 2.48
CLN3-230ENST00000568076 P3H3Q8IVL6 736 aa30.54■■■□□ 2.48
CLN3-230ENST00000568076 FHAD1B1AJZ9 1412 aa30.53■■■□□ 2.48
CLN3-230ENST00000568076 MRC2Q9UBG0 1479 aa30.53■■■□□ 2.48
CLN3-230ENST00000568076 EFCAB5A4FU69 1503 aa30.53■■■□□ 2.48
CLN3-230ENST00000568076 FHOD3Q2V2M9 1422 aa30.51■■■□□ 2.47
CLN3-230ENST00000568076 PCF11O94913 1555 aaKnown RBP30.49■■■□□ 2.47
CLN3-230ENST00000568076 LRRC9Q6ZRR7 1453 aa30.43■■■□□ 2.46
CLN3-230ENST00000568076 CCNB3Q8WWL7 1395 aa30.41■■■□□ 2.46
CLN3-230ENST00000568076 CFAP43Q8NDM7 1665 aa30.41■■■□□ 2.46
CLN3-230ENST00000568076 PBRM1Q86U86 1689 aa30.38■■■□□ 2.45
CLN3-230ENST00000568076 FYCO1Q9BQS8 1478 aa30.37■■■□□ 2.45
CLN3-230ENST00000568076 AQRO60306 1485 aaKnown RBP eCLIP30.37■■■□□ 2.456e-6■■■■□ 25.1
CLN3-230ENST00000568076 CASKIN1Q8WXD9 1431 aa30.36■■■□□ 2.45
CLN3-230ENST00000568076 SAMD9Q5K651 1589 aa30.35■■■□□ 2.45
CLN3-230ENST00000568076 WDR62O43379 1518 aa30.33■■■□□ 2.45
CLN3-230ENST00000568076 FMN1Q68DA7 1419 aa30.29■■■□□ 2.44
CLN3-230ENST00000568076 ATP1B4Q9UN42 357 aaPredicted RBP30.28■■■□□ 2.44
CLN3-230ENST00000568076 SNAPC4Q5SXM2 1469 aa30.28■■■□□ 2.44
CLN3-230ENST00000568076 PHLDB1Q86UU1 1377 aa30.28■■■□□ 2.44
CLN3-230ENST00000568076 ADAMTS12P58397 1594 aa30.27■■■□□ 2.44
CLN3-230ENST00000568076 IFT140Q96RY7 1462 aa30.27■■■□□ 2.44
CLN3-230ENST00000568076 ZNF608Q9ULD9 1512 aaPredicted RBP30.24■■■□□ 2.43
CLN3-230ENST00000568076 GRIN2BQ13224 1484 aa30.24■■■□□ 2.43
CLN3-230ENST00000568076 DHX57Q6P158 1386 aaKnown RBP30.21■■■□□ 2.43
CLN3-230ENST00000568076 ITGAEP38570 1179 aa30.15■■■□□ 2.42
CLN3-230ENST00000568076 ERCC6Q03468 1493 aa30.14■■■□□ 2.42
CLN3-230ENST00000568076 IQGAP2Q13576 1575 aa30.12■■■□□ 2.41
CLN3-230ENST00000568076 LRRIQ1Q96JM4 1722 aa30.11■■■□□ 2.41
CLN3-230ENST00000568076 CLSPNQ9HAW4 1339 aa30.11■■■□□ 2.41
CLN3-230ENST00000568076 THOC2Q8NI27 1593 aaKnown RBP30.09■■■□□ 2.41
CLN3-230ENST00000568076 EIF4G3O43432 1585 aaKnown RBP30.06■■■□□ 2.4
CLN3-230ENST00000568076 FAM50AQ14320 339 aaKnown RBP30.03■■■□□ 2.4
CLN3-230ENST00000568076 ZNF316A6NFI3 1004 aaPredicted RBP30.01■■■□□ 2.4
CLN3-230ENST00000568076 RAB3GAP2Q9H2M9 1393 aa30.01■■■□□ 2.39
CLN3-230ENST00000568076 DIEXFQ68CQ4 756 aaKnown RBP30■■■□□ 2.39
CLN3-230ENST00000568076 MTUS2Q5JR59 1369 aa29.99■■■□□ 2.39
CLN3-230ENST00000568076 UGGT2Q9NYU1 1516 aa29.97■■■□□ 2.39
CLN3-230ENST00000568076 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.96■■■□□ 2.39
CLN3-230ENST00000568076 SETD5Q9C0A6 1442 aa29.94■■■□□ 2.38
CLN3-230ENST00000568076 FGD6Q6ZV73 1430 aa29.93■■■□□ 2.38
CLN3-230ENST00000568076 GRIN2AQ12879 1464 aa29.92■■■□□ 2.38
CLN3-230ENST00000568076 KIAA0586Q9BVV6 1533 aa29.92■■■□□ 2.38
CLN3-230ENST00000568076 EHBP1L1Q8N3D4 1523 aa29.89■■■□□ 2.38
CLN3-230ENST00000568076 NCOA2Q15596 1464 aa29.89■■■□□ 2.38
CLN3-230ENST00000568076 MAGI3Q5TCQ9 1506 aa29.89■■■□□ 2.37
CLN3-230ENST00000568076 HECW1Q76N89 1606 aa29.88■■■□□ 2.37
CLN3-230ENST00000568076 CCDC18Q5T9S5 1454 aa29.88■■■□□ 2.37
CLN3-230ENST00000568076 MAGI1Q96QZ7 1491 aaPredicted RBP29.86■■■□□ 2.37
CLN3-230ENST00000568076 SUPT6HQ7KZ85 1726 aaKnown RBP29.85■■■□□ 2.37
CLN3-230ENST00000568076 DISP1Q96F81 1524 aa29.84■■■□□ 2.37
CLN3-230ENST00000568076 MAPKBP1O60336 1514 aa29.83■■■□□ 2.37
CLN3-230ENST00000568076 EPRSP07814 1512 aaKnown RBP29.82■■■□□ 2.36
CLN3-230ENST00000568076 MYOM3Q5VTT5 1437 aa29.82■■■□□ 2.36
CLN3-230ENST00000568076 ARHGEF11O15085 1522 aa29.82■■■□□ 2.36
CLN3-230ENST00000568076 KIAA0556O60303 1618 aa29.81■■■□□ 2.36
CLN3-230ENST00000568076 SYNJ2O15056 1496 aa29.78■■■□□ 2.36
CLN3-230ENST00000568076 CDK13Q14004 1512 aaKnown RBP29.77■■■□□ 2.36
CLN3-230ENST00000568076 CEP170Q5SW79 1584 aa29.75■■■□□ 2.35
CLN3-230ENST00000568076 PTPRKQ15262 1439 aa29.74■■■□□ 2.35
CLN3-230ENST00000568076 CHMP7Q8WUX9 453 aaPredicted RBP29.73■■■□□ 2.35
CLN3-230ENST00000568076 PTPN23Q9H3S7 1636 aa29.68■■■□□ 2.34
CLN3-230ENST00000568076 ARID3CA6NKF2 412 aa29.66■■■□□ 2.34
CLN3-230ENST00000568076 NUP160Q12769 1436 aa29.64■■■□□ 2.34
CLN3-230ENST00000568076 NUP153P49790 1475 aaKnown RBP29.63■■■□□ 2.33
CLN3-230ENST00000568076 FBLN2P98095 1184 aa29.63■■■□□ 2.33
CLN3-230ENST00000568076 HFM1A2PYH4 1435 aa29.63■■■□□ 2.33
CLN3-230ENST00000568076 TCOF1Q13428 1488 aaKnown RBP29.62■■■□□ 2.33
CLN3-230ENST00000568076 RAPGEF6Q8TEU7 1601 aa29.62■■■□□ 2.33
CLN3-230ENST00000568076 NAIPQ13075 1403 aa29.56■■■□□ 2.32
CLN3-230ENST00000568076 SIN3AQ96ST3 1273 aa29.53■■■□□ 2.32
CLN3-230ENST00000568076 MIA2Q96PC5 1412 aa29.53■■■□□ 2.32
CLN3-230ENST00000568076 JPH4Q96JJ6 628 aa29.52■■■□□ 2.32
CLN3-230ENST00000568076 PLB1Q6P1J6 1458 aa29.49■■■□□ 2.31
CLN3-230ENST00000568076 CARMIL2Q6F5E8 1435 aa29.47■■■□□ 2.31
CLN3-230ENST00000568076 UACAQ9BZF9 1416 aa29.46■■■□□ 2.31
CLN3-230ENST00000568076 MIER1Q8N108 512 aa29.45■■■□□ 2.31
CLN3-230ENST00000568076 NEUROD1Q13562 356 aa29.44■■■□□ 2.3
CLN3-230ENST00000568076 CHIC2Q9UKJ5 165 aa29.39■■■□□ 2.3
CLN3-230ENST00000568076 CDK11AQ9UQ88 783 aaPredicted RBP29.39■■■□□ 2.3
CLN3-230ENST00000568076 AKNAQ7Z591 1439 aa29.38■■■□□ 2.29
CLN3-230ENST00000568076 GCC2Q8IWJ2 1684 aa29.38■■■□□ 2.29
CLN3-230ENST00000568076 RRP7BPQ9NSQ0 103 aa29.38■■■□□ 2.29
CLN3-230ENST00000568076 PRG4Q92954 1404 aaPredicted RBP29.38■■■□□ 2.29
CLN3-230ENST00000568076 TROQ12816 1431 aaPredicted RBP29.37■■■□□ 2.29
CLN3-230ENST00000568076 TIMELESSQ9UNS1 1208 aa29.37■■■□□ 2.29
CLN3-230ENST00000568076 ABCA8O94911 1581 aa29.32■■■□□ 2.28
CLN3-230ENST00000568076 ACIN1Q9UKV3 1341 aaKnown RBP29.31■■■□□ 2.28
CLN3-230ENST00000568076 KDM6BO15054 1643 aa29.31■■■□□ 2.28
CLN3-230ENST00000568076 DAPK1P53355 1430 aa29.3■■■□□ 2.28
CLN3-230ENST00000568076 ZNF644Q9H582 1327 aaPredicted RBP29.3■■■□□ 2.28
CLN3-230ENST00000568076 SCAF1Q9H7N4 1312 aaKnown RBP29.29■■■□□ 2.28
CLN3-230ENST00000568076 DNMT1P26358 1616 aaKnown RBP29.28■■■□□ 2.28
CLN3-230ENST00000568076 ADCY10Q96PN6 1610 aa29.28■■■□□ 2.28
CLN3-230ENST00000568076 KIF14Q15058 1648 aa29.27■■■□□ 2.28
CLN3-230ENST00000568076 ABCC5O15440 1437 aa29.26■■■□□ 2.27
CLN3-230ENST00000568076 CHD1O14646 1710 aa29.25■■■□□ 2.27
CLN3-230ENST00000568076 PPP1R15AO75807 674 aaPredicted RBP29.24■■■□□ 2.27
CLN3-230ENST00000568076 CENPBP07199 599 aaPredicted RBP29.22■■■□□ 2.27
CLN3-230ENST00000568076 DENND4BO75064 1496 aaPredicted RBP29.22■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms