RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CEP162Q5TB80 1403 aa20.15■□□□□ 0.82
VPS4A-204ENST00000566354 ADAMTS12P58397 1594 aa20.11■□□□□ 0.81
VPS4A-204ENST00000566354 SCAF1Q9H7N4 1312 aaKnown RBP20.1■□□□□ 0.81
VPS4A-204ENST00000566354 SNAPC4Q5SXM2 1469 aa20.1■□□□□ 0.81
VPS4A-204ENST00000566354 RANGAP1P46060 587 aaPredicted RBP20.1■□□□□ 0.81
VPS4A-204ENST00000566354 FHAD1B1AJZ9 1412 aa20.09■□□□□ 0.81
VPS4A-204ENST00000566354 CLIP1P30622 1438 aa20.03■□□□□ 0.8
VPS4A-204ENST00000566354 MAGI1Q96QZ7 1491 aaPredicted RBP20.02■□□□□ 0.8
VPS4A-204ENST00000566354 CTTNBP2Q8WZ74 1663 aa19.98■□□□□ 0.79
VPS4A-204ENST00000566354 SYNJ2O15056 1496 aa19.96■□□□□ 0.79
VPS4A-204ENST00000566354 FBLN2P98095 1184 aa19.96■□□□□ 0.79
VPS4A-204ENST00000566354 GRIN2AQ12879 1464 aa19.95■□□□□ 0.78
VPS4A-204ENST00000566354 CHMP7Q8WUX9 453 aaPredicted RBP19.95■□□□□ 0.78
VPS4A-204ENST00000566354 DIEXFQ68CQ4 756 aaKnown RBP19.92■□□□□ 0.78
VPS4A-204ENST00000566354 ARHGAP35Q9NRY4 1499 aa19.9■□□□□ 0.78
VPS4A-204ENST00000566354 ACIN1Q9UKV3 1341 aaKnown RBP19.9■□□□□ 0.78
VPS4A-204ENST00000566354 ARAP1Q96P48 1450 aa19.87■□□□□ 0.77
VPS4A-204ENST00000566354 CEP170Q5SW79 1584 aa19.85■□□□□ 0.77
VPS4A-204ENST00000566354 IQGAP2Q13576 1575 aa19.83■□□□□ 0.77
VPS4A-204ENST00000566354 CHD1O14646 1710 aa19.83■□□□□ 0.77
VPS4A-204ENST00000566354 P3H3Q8IVL6 736 aa19.83■□□□□ 0.76
VPS4A-204ENST00000566354 VPS8Q8N3P4 1428 aa19.82■□□□□ 0.76
VPS4A-204ENST00000566354 NEUROD1Q13562 356 aa19.81■□□□□ 0.76
VPS4A-204ENST00000566354 KIAA0586Q9BVV6 1533 aa19.81■□□□□ 0.76
VPS4A-204ENST00000566354 NUP160Q12769 1436 aa19.8■□□□□ 0.76
VPS4A-204ENST00000566354 CENPBP07199 599 aaPredicted RBP19.8■□□□□ 0.76
VPS4A-204ENST00000566354 EFCAB5A4FU69 1503 aa19.77■□□□□ 0.76
VPS4A-204ENST00000566354 FHOD3Q2V2M9 1422 aa19.77■□□□□ 0.76
VPS4A-204ENST00000566354 SAMD9Q5K651 1589 aa19.76■□□□□ 0.75
VPS4A-204ENST00000566354 ZNF316A6NFI3 1004 aaPredicted RBP19.74■□□□□ 0.75
VPS4A-204ENST00000566354 UGGT2Q9NYU1 1516 aa19.72■□□□□ 0.75
VPS4A-204ENST00000566354 JPH4Q96JJ6 628 aa19.67■□□□□ 0.74
VPS4A-204ENST00000566354 DISP1Q96F81 1524 aa19.67■□□□□ 0.74
VPS4A-204ENST00000566354 GTF3C3Q9Y5Q9 886 aa19.64■□□□□ 0.74
VPS4A-204ENST00000566354 KIAA0556O60303 1618 aa19.64■□□□□ 0.73
VPS4A-204ENST00000566354 APLP2Q06481 763 aa19.63■□□□□ 0.73
VPS4A-204ENST00000566354 PCF11O94913 1555 aaKnown RBP19.62■□□□□ 0.73
VPS4A-204ENST00000566354 HNRNPUL2Q1KMD3 747 aaKnown RBP19.62■□□□□ 0.73
VPS4A-204ENST00000566354 FMN1Q68DA7 1419 aa19.61■□□□□ 0.73
VPS4A-204ENST00000566354 ATP1B4Q9UN42 357 aaPredicted RBP19.58■□□□□ 0.73
VPS4A-204ENST00000566354 CLASP1Q7Z460 1538 aa19.58■□□□□ 0.72
VPS4A-204ENST00000566354 CASKIN1Q8WXD9 1431 aa19.56■□□□□ 0.72
VPS4A-204ENST00000566354 PRG4Q92954 1404 aaPredicted RBP19.56■□□□□ 0.72
VPS4A-204ENST00000566354 CARMIL2Q6F5E8 1435 aa19.55■□□□□ 0.72
VPS4A-204ENST00000566354 SHROOM2Q13796 1616 aa19.55■□□□□ 0.72
VPS4A-204ENST00000566354 SLC24A1O60721 1099 aa19.54■□□□□ 0.72
VPS4A-204ENST00000566354 FYCO1Q9BQS8 1478 aa19.54■□□□□ 0.72
VPS4A-204ENST00000566354 KANK4Q5T7N3 995 aaPredicted RBP19.52■□□□□ 0.72
VPS4A-204ENST00000566354 ERCC6L2Q5T890 1561 aa19.5■□□□□ 0.71
VPS4A-204ENST00000566354 TIAM1Q13009 1591 aa19.49■□□□□ 0.71
VPS4A-204ENST00000566354 OSCARQ8IYS5 282 aa19.48■□□□□ 0.71
VPS4A-204ENST00000566354 LRRIQ1Q96JM4 1722 aa19.48■□□□□ 0.71
VPS4A-204ENST00000566354 MAP3K1Q13233 1512 aa19.45■□□□□ 0.7
VPS4A-204ENST00000566354 CFAP43Q8NDM7 1665 aa19.45■□□□□ 0.7
VPS4A-204ENST00000566354 CLSPNQ9HAW4 1339 aa19.44■□□□□ 0.7
VPS4A-204ENST00000566354 PLB1Q6P1J6 1458 aa19.44■□□□□ 0.7
VPS4A-204ENST00000566354 ARID3CA6NKF2 412 aa19.43■□□□□ 0.7
VPS4A-204ENST00000566354 MIER1Q8N108 512 aa19.43■□□□□ 0.7
VPS4A-204ENST00000566354 HECW1Q76N89 1606 aa19.43■□□□□ 0.7
VPS4A-204ENST00000566354 RAPGEF6Q8TEU7 1601 aa19.42■□□□□ 0.7
VPS4A-204ENST00000566354 PTPRGP23470 1445 aa19.41■□□□□ 0.7
VPS4A-204ENST00000566354 LRRC9Q6ZRR7 1453 aa19.41■□□□□ 0.7
VPS4A-204ENST00000566354 NUP153P49790 1475 aaKnown RBP19.39■□□□□ 0.69
VPS4A-204ENST00000566354 EPRSP07814 1512 aaKnown RBP19.39■□□□□ 0.69
VPS4A-204ENST00000566354 CDK13Q14004 1512 aaKnown RBP19.38■□□□□ 0.69
VPS4A-204ENST00000566354 YTHDC1Q96MU7 727 aaKnown RBP19.37■□□□□ 0.69
VPS4A-204ENST00000566354 ABCA8O94911 1581 aa19.36■□□□□ 0.69
VPS4A-204ENST00000566354 CCDC18Q5T9S5 1454 aa19.35■□□□□ 0.69
VPS4A-204ENST00000566354 ERICH6Q7L0X2 663 aa19.35■□□□□ 0.69
VPS4A-204ENST00000566354 DHX57Q6P158 1386 aaKnown RBP19.32■□□□□ 0.68
VPS4A-204ENST00000566354 MAGI3Q5TCQ9 1506 aa19.32■□□□□ 0.68
VPS4A-204ENST00000566354 MTUS2Q5JR59 1369 aa19.32■□□□□ 0.68
VPS4A-204ENST00000566354 UACAQ9BZF9 1416 aa19.29■□□□□ 0.68
VPS4A-204ENST00000566354 RRBP1Q9P2E9 1410 aaKnown RBP19.28■□□□□ 0.68
VPS4A-204ENST00000566354 EHBP1L1Q8N3D4 1523 aa19.26■□□□□ 0.67
VPS4A-204ENST00000566354 AEBP2Q6ZN18 517 aaPredicted RBP19.25■□□□□ 0.67
VPS4A-204ENST00000566354 PHLDB1Q86UU1 1377 aa19.25■□□□□ 0.67
VPS4A-204ENST00000566354 ATP10BO94823 1461 aa19.25■□□□□ 0.67
VPS4A-204ENST00000566354 ABCC2Q92887 1545 aa19.23■□□□□ 0.67
VPS4A-204ENST00000566354 PRKCSHP14314 528 aaPredicted RBP19.21■□□□□ 0.67
VPS4A-204ENST00000566354 SUPT6HQ7KZ85 1726 aaKnown RBP19.21■□□□□ 0.67
VPS4A-204ENST00000566354 NCOA2Q15596 1464 aa19.2■□□□□ 0.66
VPS4A-204ENST00000566354 CDK11AQ9UQ88 783 aaPredicted RBP19.2■□□□□ 0.66
VPS4A-204ENST00000566354 ARHGEF11O15085 1522 aa19.17■□□□□ 0.66
VPS4A-204ENST00000566354 CCNB3Q8WWL7 1395 aa19.17■□□□□ 0.66
VPS4A-204ENST00000566354 UHRF1BP1LA0JNW5 1464 aa19.17■□□□□ 0.66
VPS4A-204ENST00000566354 TROQ12816 1431 aaPredicted RBP19.16■□□□□ 0.66
VPS4A-204ENST00000566354 ADCY10Q96PN6 1610 aa19.16■□□□□ 0.66
VPS4A-204ENST00000566354 PLEKHD1A6NEE1 506 aa19.14■□□□□ 0.66
VPS4A-204ENST00000566354 ZCCHC11Q5TAX3 1644 aaKnown RBP19.12■□□□□ 0.65
VPS4A-204ENST00000566354 KIF14Q15058 1648 aa19.12■□□□□ 0.65
VPS4A-204ENST00000566354 KDM5BQ9UGL1 1544 aa19.11■□□□□ 0.65
VPS4A-204ENST00000566354 MYOM3Q5VTT5 1437 aa19.11■□□□□ 0.65
VPS4A-204ENST00000566354 FGD6Q6ZV73 1430 aa19.1■□□□□ 0.65
VPS4A-204ENST00000566354 RIMBP3CA6NJZ7 1639 aa19.1■□□□□ 0.65
VPS4A-204ENST00000566354 RIMBP3BA6NNM3 1639 aa19.1■□□□□ 0.65
VPS4A-204ENST00000566354 RIMBP3Q9UFD9 1639 aa19.1■□□□□ 0.65
VPS4A-204ENST00000566354 FAM50AQ14320 339 aaKnown RBP19.08■□□□□ 0.64
VPS4A-204ENST00000566354 ITGAEP38570 1179 aa19.05■□□□□ 0.64
VPS4A-204ENST00000566354 CYB5RLQ6IPT4 315 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms