RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CHMP7Q8WUX9 453 aaPredicted RBP48.87■■■■■ 5.41
CTCF-203ENST00000566078 RANGAP1P46060 587 aaPredicted RBP48.81■■■■■ 5.4
CTCF-203ENST00000566078 FBLN2P98095 1184 aa48.8■■■■■ 5.4
CTCF-203ENST00000566078 CEP170Q5SW79 1584 aa48.77■■■■■ 5.4
CTCF-203ENST00000566078 IQGAP2Q13576 1575 aa48.73■■■■■ 5.39
CTCF-203ENST00000566078 NUP160Q12769 1436 aa48.65■■■■■ 5.38
CTCF-203ENST00000566078 ARHGAP35Q9NRY4 1499 aa48.62■■■■■ 5.37
CTCF-203ENST00000566078 KIAA0586Q9BVV6 1533 aa48.62■■■■■ 5.37
CTCF-203ENST00000566078 EFCAB5A4FU69 1503 aa48.58■■■■■ 5.37
CTCF-203ENST00000566078 ARAP1Q96P48 1450 aa48.54■■■■■ 5.36
CTCF-203ENST00000566078 SAMD9Q5K651 1589 aa48.53■■■■■ 5.36
CTCF-203ENST00000566078 UGGT2Q9NYU1 1516 aa48.44■■■■■ 5.34
CTCF-203ENST00000566078 VPS8Q8N3P4 1428 aa48.37■■■■■ 5.33
CTCF-203ENST00000566078 FHOD3Q2V2M9 1422 aa48.3■■■■■ 5.32
CTCF-203ENST00000566078 P3H3Q8IVL6 736 aa48.28■■■■■ 5.32
CTCF-203ENST00000566078 KIAA0556O60303 1618 aa48.26■■■■■ 5.32
CTCF-203ENST00000566078 CLASP1Q7Z460 1538 aa48.24■■■■■ 5.31
CTCF-203ENST00000566078 DISP1Q96F81 1524 aa48.21■■■■■ 5.31
CTCF-203ENST00000566078 SHROOM2Q13796 1616 aa48.19■■■■■ 5.31
CTCF-203ENST00000566078 JPH4Q96JJ6 628 aa48.13■■■■■ 5.3
CTCF-203ENST00000566078 PCF11O94913 1555 aaKnown RBP48.07■■■■■ 5.29
CTCF-203ENST00000566078 FMN1Q68DA7 1419 aa48.04■■■■■ 5.28
CTCF-203ENST00000566078 CARMIL2Q6F5E8 1435 aa48.03■■■■■ 5.28
CTCF-203ENST00000566078 PRG4Q92954 1404 aaPredicted RBP47.97■■■■■ 5.27
CTCF-203ENST00000566078 FYCO1Q9BQS8 1478 aa47.9■■■■■ 5.26
CTCF-203ENST00000566078 CASKIN1Q8WXD9 1431 aa47.88■■■■■ 5.26
CTCF-203ENST00000566078 OSCARQ8IYS5 282 aa47.88■■■■■ 5.25
CTCF-203ENST00000566078 ERCC6L2Q5T890 1561 aa47.83■■■■■ 5.25
CTCF-203ENST00000566078 LRRIQ1Q96JM4 1722 aa47.8■■■■■ 5.24
CTCF-203ENST00000566078 APLP2Q06481 763 aa47.78■■■■■ 5.24
CTCF-203ENST00000566078 CFAP43Q8NDM7 1665 aa47.78■■■■■ 5.24
CTCF-203ENST00000566078 HECW1Q76N89 1606 aa47.75■■■■■ 5.24
CTCF-203ENST00000566078 TTBK1Q5TCY1 1321 aaPredicted RBP47.75■■■■■ 5.23
CTCF-203ENST00000566078 RAPGEF6Q8TEU7 1601 aa47.74■■■■■ 5.23
CTCF-203ENST00000566078 PPARGC1BQ86YN6 1023 aaKnown RBP47.72■■■■■ 5.23
CTCF-203ENST00000566078 TIAM1Q13009 1591 aa47.71■■■■■ 5.23
CTCF-203ENST00000566078 ATP1B4Q9UN42 357 aaPredicted RBP47.68■■■■■ 5.22
CTCF-203ENST00000566078 MAP3K1Q13233 1512 aa47.66■■■■■ 5.22
CTCF-203ENST00000566078 PTPRGP23470 1445 aa47.58■■■■■ 5.21
CTCF-203ENST00000566078 ABCA8O94911 1581 aa47.57■■■■■ 5.21
CTCF-203ENST00000566078 PLB1Q6P1J6 1458 aa47.56■■■■■ 5.2
CTCF-203ENST00000566078 CCDC18Q5T9S5 1454 aa47.52■■■■■ 5.2
CTCF-203ENST00000566078 NUP153P49790 1475 aaKnown RBP47.48■■■■■ 5.19
CTCF-203ENST00000566078 EPRSP07814 1512 aaKnown RBP47.47■■■■■ 5.19
CTCF-203ENST00000566078 CDK13Q14004 1512 aaKnown RBP47.42■■■■■ 5.18
CTCF-203ENST00000566078 KANK4Q5T7N3 995 aaPredicted RBP47.41■■■■■ 5.18
CTCF-203ENST00000566078 LRRC9Q6ZRR7 1453 aa47.41■■■■■ 5.18
CTCF-203ENST00000566078 UACAQ9BZF9 1416 aa47.33■■■■■ 5.17
CTCF-203ENST00000566078 ARID3CA6NKF2 412 aa47.3■■■■■ 5.16
CTCF-203ENST00000566078 ABCC2Q92887 1545 aa47.28■■■■■ 5.16
CTCF-203ENST00000566078 EHBP1L1Q8N3D4 1523 aa47.24■■■■■ 5.15
CTCF-203ENST00000566078 ARHGEF11O15085 1522 aa47.24■■■■■ 5.15
CTCF-203ENST00000566078 MAGI3Q5TCQ9 1506 aa47.23■■■■■ 5.15
CTCF-203ENST00000566078 MTUS2Q5JR59 1369 aa47.2■■■■■ 5.15
CTCF-203ENST00000566078 TRIM26Q12899 539 aaPredicted RBP47.19■■■■■ 5.15
CTCF-203ENST00000566078 UHRF1BP1LA0JNW5 1464 aa47.16■■■■■ 5.14
CTCF-203ENST00000566078 SUPT6HQ7KZ85 1726 aaKnown RBP47.15■■■■■ 5.14
CTCF-203ENST00000566078 RIMBP3CA6NJZ7 1639 aa47.14■■■■■ 5.14
CTCF-203ENST00000566078 RIMBP3BA6NNM3 1639 aa47.14■■■■■ 5.14
CTCF-203ENST00000566078 RIMBP3Q9UFD9 1639 aa47.14■■■■■ 5.14
CTCF-203ENST00000566078 ATP10BO94823 1461 aa47.14■■■■■ 5.14
CTCF-203ENST00000566078 ADCY10Q96PN6 1610 aa47.13■■■■■ 5.13
CTCF-203ENST00000566078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP47.11■■■■■ 5.13
CTCF-203ENST00000566078 HNRNPUL2Q1KMD3 747 aaKnown RBP47.11■■■■■ 5.13
CTCF-203ENST00000566078 ZCCHC11Q5TAX3 1644 aaKnown RBP47.06■■■■■ 5.12
CTCF-203ENST00000566078 CDK11AQ9UQ88 783 aaPredicted RBP47.01■■■■■ 5.12
CTCF-203ENST00000566078 PCGF6Q9BYE7 350 aa46.99■■■■■ 5.11
CTCF-203ENST00000566078 KDM5BQ9UGL1 1544 aa46.96■■■■■ 5.11
CTCF-203ENST00000566078 NCOA2Q15596 1464 aa46.95■■■■■ 5.11
CTCF-203ENST00000566078 TROQ12816 1431 aaPredicted RBP46.94■■■■■ 5.11
CTCF-203ENST00000566078 PHLDB1Q86UU1 1377 aa46.9■■■■■ 5.1
CTCF-203ENST00000566078 KIF14Q15058 1648 aa46.87■■■■■ 5.09
CTCF-203ENST00000566078 PLEKHD1A6NEE1 506 aa46.82■■■■■ 5.09
CTCF-203ENST00000566078 RRBP1Q9P2E9 1410 aaKnown RBP46.8■■■■■ 5.08
CTCF-203ENST00000566078 MYOM3Q5VTT5 1437 aa46.71■■■■■ 5.07
CTCF-203ENST00000566078 ITSN2Q9NZM3 1697 aa46.68■■■■■ 5.06
CTCF-203ENST00000566078 CCNB3Q8WWL7 1395 aa46.68■■■■■ 5.06
CTCF-203ENST00000566078 FGD6Q6ZV73 1430 aa46.65■■■■■ 5.06
CTCF-203ENST00000566078 CYB5RLQ6IPT4 315 aa46.64■■■■■ 5.06
CTCF-203ENST00000566078 CDC42BPAQ5VT25 1732 aa46.62■■■■■ 5.05
CTCF-203ENST00000566078 ABCC10Q5T3U5 1492 aa46.59■■■■■ 5.05
CTCF-203ENST00000566078 PTPN23Q9H3S7 1636 aa46.57■■■■■ 5.05
CTCF-203ENST00000566078 NPM1P06748 294 aaKnown RBP eCLIP46.56■■■■■ 5.04
CTCF-203ENST00000566078 WDR7Q9Y4E6 1490 aa46.55■■■■■ 5.04
CTCF-203ENST00000566078 TTC37Q6PGP7 1564 aa46.53■■■■■ 5.04
CTCF-203ENST00000566078 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP46.5■■■■■ 5.035e-8■■■■■ 28.6
CTCF-203ENST00000566078 ASXL2Q76L83 1435 aa46.5■■■■■ 5.03
CTCF-203ENST00000566078 MIA2Q96PC5 1412 aa46.48■■■■■ 5.03
CTCF-203ENST00000566078 GPATCH8Q9UKJ3 1502 aaKnown RBP46.48■■■■■ 5.03
CTCF-203ENST00000566078 MYO5CQ9NQX4 1742 aa46.48■■■■■ 5.03
CTCF-203ENST00000566078 PREX2Q70Z35 1606 aa46.45■■■■■ 5.03
CTCF-203ENST00000566078 FAM50AQ14320 339 aaKnown RBP46.43■■■■■ 5.02
CTCF-203ENST00000566078 KCNH8Q96L42 1107 aa46.42■■■■■ 5.02
CTCF-203ENST00000566078 CDC42BPBQ9Y5S2 1711 aa46.42■■■■■ 5.02
CTCF-203ENST00000566078 TCOF1Q13428 1488 aaKnown RBP46.42■■■■■ 5.02
CTCF-203ENST00000566078 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP46.41■■■■■ 5.021e-6■■■■■ 32.9
CTCF-203ENST00000566078 MAPKBP1O60336 1514 aa46.37■■■■■ 5.01
CTCF-203ENST00000566078 ABCA9Q8IUA7 1624 aa46.33■■■■■ 5.01
CTCF-203ENST00000566078 CFDP1Q9UEE9 299 aaPredicted RBP46.28■■■■■ 5
CTCF-203ENST00000566078 CAMSAP2Q08AD1 1489 aa46.27■■■■■ 5
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms