RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 NISCHQ9Y2I1 1504 aa70.9■■■■■ 8.94
CTCF-203ENST00000566078 CCDC180Q9P1Z9 1646 aa62.34■■■■■ 7.57
CTCF-203ENST00000566078 ZCCHC6Q5VYS8 1495 aaKnown RBP59.46■■■■■ 7.11
CTCF-203ENST00000566078 ABCC9O60706 1549 aa59.29■■■■■ 7.08
CTCF-203ENST00000566078 DCAF1Q9Y4B6 1507 aa58.66■■■■■ 6.98
CTCF-203ENST00000566078 DCAF8L2P0C7V8 631 aa58.56■■■■■ 6.96
CTCF-203ENST00000566078 MYO15BQ96JP2 1530 aa58.2■■■■■ 6.91
CTCF-203ENST00000566078 NACADO15069 1562 aa58.07■■■■■ 6.89
CTCF-203ENST00000566078 RB1CC1Q8TDY2 1594 aa57.76■■■■■ 6.84
CTCF-203ENST00000566078 SHROOM4Q9ULL8 1493 aa57.26■■■■■ 6.76
CTCF-203ENST00000566078 SCRIBQ14160 1630 aa57.14■■■■■ 6.74
CTCF-203ENST00000566078 UNC13AQ9UPW8 1703 aa56.77■■■■■ 6.68
CTCF-203ENST00000566078 BICRAQ9NZM4 1560 aa56.01■■■■■ 6.56
CTCF-203ENST00000566078 PABPN1Q86U42 306 aaKnown RBP eCLIP55.66■■■■■ 6.5
CTCF-203ENST00000566078 CECR2Q9BXF3 1484 aa55.09■■■■■ 6.41
CTCF-203ENST00000566078 BAZ1AQ9NRL2 1556 aaPredicted RBP54.85■■■■■ 6.37
CTCF-203ENST00000566078 SMARCA4P51532 1647 aa54.74■■■■■ 6.35
CTCF-203ENST00000566078 MROH2BQ7Z745 1585 aa54.74■■■■■ 6.35
CTCF-203ENST00000566078 SUPT5HO00267 1087 aaKnown RBP54.71■■■■■ 6.35
CTCF-203ENST00000566078 RSF1Q96T23 1441 aaPredicted RBP54.67■■■■■ 6.34
CTCF-203ENST00000566078 EIF4G1Q04637 1599 aaKnown RBP54.37■■■■■ 6.29
CTCF-203ENST00000566078 WIZO95785 1651 aa54.36■■■■■ 6.29
CTCF-203ENST00000566078 PEG3Q9GZU2 1588 aa54.07■■■■■ 6.25
CTCF-203ENST00000566078 SMARCA2P51531 1590 aa53.91■■■■■ 6.22
CTCF-203ENST00000566078 ATAD2BQ9ULI0 1458 aa53.86■■■■■ 6.21
CTCF-203ENST00000566078 TOP2AP11388 1531 aaKnown RBP53.76■■■■■ 6.2
CTCF-203ENST00000566078 CC2D2AQ9P2K1 1620 aa53.75■■■■■ 6.2
CTCF-203ENST00000566078 BAZ1BQ9UIG0 1483 aaKnown RBP53.57■■■■■ 6.17
CTCF-203ENST00000566078 HMGXB3Q12766 1538 aa53.5■■■■■ 6.15
CTCF-203ENST00000566078 NCAPD3P42695 1498 aa53.49■■■■■ 6.15
CTCF-203ENST00000566078 CCDC88BA6NC98 1476 aa53.09■■■■■ 6.09
CTCF-203ENST00000566078 DNAJC5BQ9UF47 199 aa52.71■■■■■ 6.03
CTCF-203ENST00000566078 PRDM2Q13029 1718 aa52.21■■■■■ 5.95
CTCF-203ENST00000566078 CFTRP13569 1480 aa52.14■■■■■ 5.94
CTCF-203ENST00000566078 CADPSQ9ULU8 1353 aa52.05■■■■■ 5.92
CTCF-203ENST00000566078 CHIC1Q5VXU3 224 aa52.03■■■■■ 5.92
CTCF-203ENST00000566078 LAMC3Q9Y6N6 1575 aa51.92■■■■■ 5.9
CTCF-203ENST00000566078 NESP48681 1621 aa51.87■■■■■ 5.89
CTCF-203ENST00000566078 ABCC8Q09428 1581 aa51.84■■■■■ 5.89
CTCF-203ENST00000566078 FANCD2Q9BXW9 1451 aa51.54■■■■■ 5.84
CTCF-203ENST00000566078 WRNQ14191 1432 aaPredicted RBP eCLIP51.51■■■■■ 5.84
CTCF-203ENST00000566078 TRIM41Q8WV44 630 aa51.51■■■■■ 5.84
CTCF-203ENST00000566078 KIF21AQ7Z4S6 1674 aa51.45■■■■■ 5.83
CTCF-203ENST00000566078 SYNJ1O43426 1573 aa51.44■■■■■ 5.82
CTCF-203ENST00000566078 PDS5BQ9NTI5 1447 aa51.42■■■■■ 5.82
CTCF-203ENST00000566078 CEP164Q9UPV0 1460 aa51.32■■■■■ 5.81
CTCF-203ENST00000566078 BIVM-ERCC5R4GMW8 1640 aa51.32■■■■■ 5.81
CTCF-203ENST00000566078 TOP2BQ02880 1626 aa51.29■■■■■ 5.8
CTCF-203ENST00000566078 CUX1P39880 1505 aa51.25■■■■■ 5.8
CTCF-203ENST00000566078 DNMBPQ6XZF7 1577 aa51.05■■■■■ 5.76
CTCF-203ENST00000566078 URB2Q14146 1524 aaKnown RBP50.95■■■■■ 5.75
CTCF-203ENST00000566078 TOPBP1Q92547 1522 aa50.94■■■■■ 5.74
CTCF-203ENST00000566078 ERCC6Q03468 1493 aa50.93■■■■■ 5.74
CTCF-203ENST00000566078 MRC2Q9UBG0 1479 aa50.85■■■■■ 5.73
CTCF-203ENST00000566078 FGD5Q6ZNL6 1462 aa50.79■■■■■ 5.72
CTCF-203ENST00000566078 THOC2Q8NI27 1593 aaKnown RBP50.72■■■■■ 5.71
CTCF-203ENST00000566078 WDR62O43379 1518 aa50.66■■■■■ 5.7
CTCF-203ENST00000566078 POLA1P09884 1462 aaPredicted RBP50.62■■■■■ 5.69
CTCF-203ENST00000566078 SOGA1O94964 1423 aa50.62■■■■■ 5.69
CTCF-203ENST00000566078 FAM9AQ8IZU1 332 aaPredicted RBP50.53■■■■■ 5.68
CTCF-203ENST00000566078 RUSC2Q8N2Y8 1516 aa50.49■■■■■ 5.67
CTCF-203ENST00000566078 EEA1Q15075 1411 aa50.45■■■■■ 5.67
CTCF-203ENST00000566078 WDR97A6NE52 1622 aa50.41■■■■■ 5.66
CTCF-203ENST00000566078 RAD54L2Q9Y4B4 1467 aa50.41■■■■■ 5.66
CTCF-203ENST00000566078 ABCA10Q8WWZ4 1543 aa50.31■■■■■ 5.65
CTCF-203ENST00000566078 TARBP1Q13395 1621 aaKnown RBP50.3■■■■■ 5.64
CTCF-203ENST00000566078 CUX2O14529 1486 aa50.3■■■■■ 5.64
CTCF-203ENST00000566078 KIF27Q86VH2 1401 aa50.26■■■■■ 5.64
CTCF-203ENST00000566078 CSRNP3Q8WYN3 585 aa50.11■■■■■ 5.61
CTCF-203ENST00000566078 IFT140Q96RY7 1462 aa50.11■■■■■ 5.61
CTCF-203ENST00000566078 ABCA5Q8WWZ7 1642 aa50.07■■■■■ 5.61
CTCF-203ENST00000566078 LOC105371045A0A1W2PR82 267 aa49.98■■■■■ 5.59
CTCF-203ENST00000566078 KIF21BO75037 1637 aa49.95■■■■■ 5.59
CTCF-203ENST00000566078 TDRD9Q8NDG6 1382 aaKnown RBP49.92■■■■■ 5.58
CTCF-203ENST00000566078 PBRM1Q86U86 1689 aa49.88■■■■■ 5.58
CTCF-203ENST00000566078 GAPVD1Q14C86 1478 aa49.88■■■■■ 5.57
CTCF-203ENST00000566078 EHMT2Q96KQ7 1210 aa49.84■■■■■ 5.57
CTCF-203ENST00000566078 ZNF608Q9ULD9 1512 aaPredicted RBP49.83■■■■■ 5.57
CTCF-203ENST00000566078 EIF4G3O43432 1585 aaKnown RBP49.8■■■■■ 5.56
CTCF-203ENST00000566078 IGF1RP08069 1367 aa49.8■■■■■ 5.56
CTCF-203ENST00000566078 PRXQ9BXM0 1461 aa49.76■■■■■ 5.56
CTCF-203ENST00000566078 ERICH3Q5RHP9 1530 aa49.76■■■■■ 5.56
CTCF-203ENST00000566078 CUL7Q14999 1698 aa49.76■■■■■ 5.56
CTCF-203ENST00000566078 AQRO60306 1485 aaKnown RBP eCLIP49.75■■■■■ 5.55
CTCF-203ENST00000566078 GOLGA3Q08378 1498 aa49.75■■■■■ 5.55
CTCF-203ENST00000566078 RAPGEF2Q9Y4G8 1499 aa49.66■■■■■ 5.54
CTCF-203ENST00000566078 GRIN2BQ13224 1484 aa49.59■■■■■ 5.53
CTCF-203ENST00000566078 CARMIL1Q5VZK9 1371 aa49.58■■■■■ 5.53
CTCF-203ENST00000566078 ADAMTS12P58397 1594 aa49.47■■■■■ 5.51
CTCF-203ENST00000566078 UBTFP17480 764 aaKnown RBP49.42■■■■■ 5.5
CTCF-203ENST00000566078 TNIKQ9UKE5 1360 aa49.39■■■■■ 5.5
CTCF-203ENST00000566078 SNAPC4Q5SXM2 1469 aa49.36■■■■■ 5.49
CTCF-203ENST00000566078 FHAD1B1AJZ9 1412 aa49.31■■■■■ 5.48
CTCF-203ENST00000566078 MAGI1Q96QZ7 1491 aaPredicted RBP49.28■■■■■ 5.48
CTCF-203ENST00000566078 CTTNBP2Q8WZ74 1663 aa49.2■■■■■ 5.47
CTCF-203ENST00000566078 CEP162Q5TB80 1403 aa49.12■■■■■ 5.45
CTCF-203ENST00000566078 SYNJ2O15056 1496 aa49.08■■■■■ 5.45
CTCF-203ENST00000566078 GRIN2AQ12879 1464 aa49■■■■■ 5.43
CTCF-203ENST00000566078 CHD1O14646 1710 aa48.93■■■■■ 5.42
CTCF-203ENST00000566078 CLIP1P30622 1438 aa48.88■■■■■ 5.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms